EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000038156 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 1467 bases
Position: chrAPWO02001923.1:25924-27390
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000051882	zf-C2H2	PF00096.26	5e-44	1	6
ENSAMXP00000051882	zf-C2H2	PF00096.26	5e-44	2	6
ENSAMXP00000051882	zf-C2H2	PF00096.26	5e-44	3	6
ENSAMXP00000051882	zf-C2H2	PF00096.26	5e-44	4	6
ENSAMXP00000051882	zf-C2H2	PF00096.26	5e-44	5	6
ENSAMXP00000051882	zf-C2H2	PF00096.26	5e-44	6	6
ENSAMXP00000051882	zf-met	PF12874.7	1.5e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000032516	-	1467	-	ENSAMXP00000051882	488 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000038156's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000038156's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000038156	-	90	91.566	ENSAMXG00000025455	-	98	91.566
ENSAMXG00000038156	-	97	69.189	ENSAMXG00000037717	-	92	70.811
ENSAMXG00000038156	-	97	66.845	ENSAMXG00000030963	-	95	66.845
ENSAMXG00000038156	-	95	83.451	ENSAMXG00000032457	-	98	83.451
ENSAMXG00000038156	-	64	69.375	ENSAMXG00000034402	-	91	69.375
ENSAMXG00000038156	-	50	60.185	ENSAMXG00000033201	-	95	60.185
ENSAMXG00000038156	-	99	84.946	ENSAMXG00000030911	-	98	84.946
ENSAMXG00000038156	-	60	63.452	ENSAMXG00000036915	-	95	63.452
ENSAMXG00000038156	-	99	76.190	ENSAMXG00000039182	-	85	81.181
ENSAMXG00000038156	-	96	80.266	ENSAMXG00000039881	-	85	80.266
ENSAMXG00000038156	-	98	68.649	ENSAMXG00000040806	-	88	68.649
ENSAMXG00000038156	-	97	63.344	ENSAMXG00000043291	-	91	63.344
ENSAMXG00000038156	-	52	74.457	ENSAMXG00000035875	-	99	74.457
ENSAMXG00000038156	-	97	62.454	ENSAMXG00000029518	-	71	64.364
ENSAMXG00000038156	-	99	81.188	ENSAMXG00000025965	-	97	81.188
ENSAMXG00000038156	-	53	65.278	ENSAMXG00000039770	-	84	65.278
ENSAMXG00000038156	-	52	63.372	ENSAMXG00000043302	-	73	63.372
ENSAMXG00000038156	-	58	68.519	ENSAMXG00000042275	-	92	68.519
ENSAMXG00000038156	-	53	75.676	ENSAMXG00000038324	-	80	75.676
ENSAMXG00000038156	-	95	68.072	ENSAMXG00000035690	-	93	67.470
ENSAMXG00000038156	-	55	38.824	ENSAMXG00000035525	znf646	56	38.824
ENSAMXG00000038156	-	96	79.459	ENSAMXG00000029178	-	96	79.459
ENSAMXG00000038156	-	98	49.568	ENSAMXG00000039004	-	90	48.333
ENSAMXG00000038156	-	83	51.434	ENSAMXG00000031501	-	100	50.969
ENSAMXG00000038156	-	93	84.925	ENSAMXG00000037885	-	97	84.925
ENSAMXG00000038156	-	99	73.514	ENSAMXG00000037923	-	99	73.514
ENSAMXG00000038156	-	90	78.378	ENSAMXG00000037760	-	93	78.378
ENSAMXG00000038156	-	58	80.874	ENSAMXG00000041865	-	99	80.874
ENSAMXG00000038156	-	53	45.070	ENSAMXG00000041862	-	94	45.070
ENSAMXG00000038156	-	73	56.941	ENSAMXG00000007092	-	98	75.934
ENSAMXG00000038156	-	95	46.849	ENSAMXG00000036567	-	86	46.849
ENSAMXG00000038156	-	51	68.156	ENSAMXG00000037143	-	94	68.156
ENSAMXG00000038156	-	51	57.838	ENSAMXG00000026143	-	93	60.694
ENSAMXG00000038156	-	77	82.629	ENSAMXG00000024978	-	99	82.629
ENSAMXG00000038156	-	58	74.457	ENSAMXG00000010078	-	86	74.457
ENSAMXG00000038156	-	51	50.345	ENSAMXG00000013492	-	97	50.228
ENSAMXG00000038156	-	97	84.422	ENSAMXG00000039744	-	99	84.422
ENSAMXG00000038156	-	52	37.692	ENSAMXG00000016921	znf341	51	37.692
ENSAMXG00000038156	-	54	50.427	ENSAMXG00000042784	-	92	56.190
ENSAMXG00000038156	-	57	61.224	ENSAMXG00000040630	-	99	69.189
ENSAMXG00000038156	-	60	63.580	ENSAMXG00000012873	-	96	63.253
ENSAMXG00000038156	-	93	87.059	ENSAMXG00000041404	-	98	85.446
ENSAMXG00000038156	-	62	46.667	ENSAMXG00000034333	-	83	52.439
ENSAMXG00000038156	-	78	53.403	ENSAMXG00000039162	-	99	53.403
ENSAMXG00000038156	-	98	79.179	ENSAMXG00000035145	-	94	79.765
ENSAMXG00000038156	-	97	74.502	ENSAMXG00000017609	-	85	74.502
ENSAMXG00000038156	-	76	87.568	ENSAMXG00000037703	-	85	87.568
ENSAMXG00000038156	-	91	87.027	ENSAMXG00000018161	-	94	87.027
ENSAMXG00000038156	-	86	86.070	ENSAMXG00000008613	-	99	86.070
ENSAMXG00000038156	-	61	68.508	ENSAMXG00000001626	-	92	68.508
ENSAMXG00000038156	-	97	87.302	ENSAMXG00000031009	-	94	87.302

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000038156	-	51	36.620	ENSAPOG00000018480	-	90	36.620	Acanthochromis_polyacanthus
ENSAMXG00000038156	-	98	45.213	ENSACIG00000003515	-	98	45.213	Amphilophus_citrinellus
ENSAMXG00000038156	-	76	57.065	ENSACIG00000017050	-	91	60.000	Amphilophus_citrinellus
ENSAMXG00000038156	-	52	43.363	ENSAOCG00000012823	-	57	43.363	Amphiprion_ocellaris
ENSAMXG00000038156	-	51	33.571	ENSAPEG00000018271	-	82	35.211	Amphiprion_percula
ENSAMXG00000038156	-	55	39.048	ENSATEG00000011221	-	62	39.048	Anabas_testudineus
ENSAMXG00000038156	-	88	57.812	ENSACLG00000023979	-	97	57.812	Astatotilapia_calliptera
ENSAMXG00000038156	-	69	60.870	ENSACLG00000014176	-	86	60.870	Astatotilapia_calliptera
ENSAMXG00000038156	-	65	56.345	ENSACLG00000024308	-	99	56.345	Astatotilapia_calliptera
ENSAMXG00000038156	-	96	56.296	ENSACLG00000003332	-	99	56.296	Astatotilapia_calliptera
ENSAMXG00000038156	-	65	61.842	ENSACLG00000011237	-	98	57.297	Astatotilapia_calliptera
ENSAMXG00000038156	-	58	53.158	ENSACLG00000015816	-	93	53.158	Astatotilapia_calliptera
ENSAMXG00000038156	-	90	57.778	ENSACLG00000028002	-	84	57.778	Astatotilapia_calliptera
ENSAMXG00000038156	-	97	47.115	ENSCPBG00000005586	-	67	47.115	Chrysemys_picta_bellii
ENSAMXG00000038156	-	54	42.857	ENSCSAVG00000009739	-	55	42.857	Ciona_savignyi
ENSAMXG00000038156	-	64	52.717	ENSCSEG00000003757	-	98	52.717	Cynoglossus_semilaevis
ENSAMXG00000038156	-	50	51.497	ENSCSEG00000018822	-	88	51.497	Cynoglossus_semilaevis
ENSAMXG00000038156	-	50	42.857	ENSCSEG00000004348	-	81	42.077	Cynoglossus_semilaevis
ENSAMXG00000038156	-	50	49.091	ENSCSEG00000014637	-	86	49.091	Cynoglossus_semilaevis
ENSAMXG00000038156	-	64	49.246	ENSCVAG00000021107	-	96	48.293	Cyprinodon_variegatus
ENSAMXG00000038156	-	50	49.730	ENSCVAG00000022991	-	87	51.892	Cyprinodon_variegatus
ENSAMXG00000038156	-	66	51.813	ENSELUG00000013245	-	91	51.813	Esox_lucius
ENSAMXG00000038156	-	51	50.556	ENSELUG00000019204	-	93	50.556	Esox_lucius
ENSAMXG00000038156	-	60	53.125	ENSELUG00000005912	-	85	53.125	Esox_lucius
ENSAMXG00000038156	-	54	65.116	ENSELUG00000013094	-	98	66.667	Esox_lucius
ENSAMXG00000038156	-	51	56.098	ENSFHEG00000013794	-	83	54.464	Fundulus_heteroclitus
ENSAMXG00000038156	-	52	47.468	ENSGAFG00000011288	-	85	47.468	Gambusia_affinis
ENSAMXG00000038156	-	52	44.681	ENSGACG00000018816	-	100	45.213	Gasterosteus_aculeatus
ENSAMXG00000038156	-	64	56.688	ENSGAGG00000006846	-	87	56.688	Gopherus_agassizii
ENSAMXG00000038156	-	57	53.333	ENSHBUG00000013542	-	61	53.333	Haplochromis_burtoni
ENSAMXG00000038156	-	51	50.270	ENSHBUG00000003057	-	94	50.857	Haplochromis_burtoni
ENSAMXG00000038156	-	61	52.047	ENSHCOG00000012175	-	86	52.047	Hippocampus_comes
ENSAMXG00000038156	-	56	49.724	ENSHCOG00000021033	-	73	49.724	Hippocampus_comes
ENSAMXG00000038156	-	53	47.449	ENSHCOG00000000138	-	59	47.449	Hippocampus_comes
ENSAMXG00000038156	-	62	49.171	ENSHCOG00000001942	-	99	46.701	Hippocampus_comes
ENSAMXG00000038156	-	61	51.128	ENSHCOG00000019481	-	73	48.148	Hippocampus_comes
ENSAMXG00000038156	-	50	50.811	ENSHCOG00000001638	-	78	50.811	Hippocampus_comes
ENSAMXG00000038156	-	62	49.020	ENSHCOG00000012617	-	79	49.020	Hippocampus_comes
ENSAMXG00000038156	-	56	47.783	ENSHCOG00000011411	-	80	48.241	Hippocampus_comes
ENSAMXG00000038156	-	51	49.180	ENSHCOG00000015463	-	56	49.180	Hippocampus_comes
ENSAMXG00000038156	-	56	49.425	ENSHCOG00000015425	-	76	49.425	Hippocampus_comes
ENSAMXG00000038156	-	50	49.215	ENSHCOG00000008028	-	83	49.215	Hippocampus_comes
ENSAMXG00000038156	-	50	54.375	ENSHCOG00000001308	-	66	54.375	Hippocampus_comes
ENSAMXG00000038156	-	63	64.324	ENSIPUG00000023688	-	93	64.516	Ictalurus_punctatus
ENSAMXG00000038156	-	95	74.194	ENSIPUG00000023635	-	97	74.194	Ictalurus_punctatus
ENSAMXG00000038156	-	50	68.939	ENSIPUG00000016075	-	95	67.935	Ictalurus_punctatus
ENSAMXG00000038156	-	96	68.280	ENSIPUG00000021441	-	95	68.280	Ictalurus_punctatus
ENSAMXG00000038156	-	64	43.694	ENSKMAG00000000371	-	72	40.637	Kryptolebias_marmoratus
ENSAMXG00000038156	-	52	49.412	ENSKMAG00000000795	-	99	45.251	Kryptolebias_marmoratus
ENSAMXG00000038156	-	50	37.778	ENSLBEG00000025305	-	82	37.778	Labrus_bergylta
ENSAMXG00000038156	-	56	44.928	ENSMAMG00000022502	-	97	45.026	Mastacembelus_armatus
ENSAMXG00000038156	-	96	55.276	ENSMZEG00005021779	-	87	55.276	Maylandia_zebra
ENSAMXG00000038156	-	64	51.531	ENSMALG00000012043	-	97	51.531	Monopterus_albus
ENSAMXG00000038156	-	55	42.408	ENSNBRG00000009811	-	85	42.408	Neolamprologus_brichardi
ENSAMXG00000038156	-	86	59.259	ENSNBRG00000003250	-	91	59.036	Neolamprologus_brichardi
ENSAMXG00000038156	-	60	50.980	ENSONIG00000014850	-	99	50.980	Oreochromis_niloticus
ENSAMXG00000038156	-	50	56.962	ENSONIG00000007810	-	100	56.962	Oreochromis_niloticus
ENSAMXG00000038156	-	50	52.212	ENSONIG00000008188	-	100	52.212	Oreochromis_niloticus
ENSAMXG00000038156	-	66	53.571	ENSORLG00020009180	-	89	53.571	Oryzias_latipes_hni
ENSAMXG00000038156	-	61	56.471	ENSORLG00015012187	-	83	56.471	Oryzias_latipes_hsok
ENSAMXG00000038156	-	69	52.356	ENSORLG00015011871	-	98	55.135	Oryzias_latipes_hsok
ENSAMXG00000038156	-	58	51.250	ENSPKIG00000012069	-	99	54.878	Paramormyrops_kingsleyae
ENSAMXG00000038156	-	51	49.485	ENSPMGG00000001543	-	88	50.000	Periophthalmus_magnuspinnatus
ENSAMXG00000038156	-	50	51.705	ENSPMGG00000018639	-	97	51.705	Periophthalmus_magnuspinnatus
ENSAMXG00000038156	-	64	52.973	ENSPFOG00000007919	-	100	52.973	Poecilia_formosa
ENSAMXG00000038156	-	69	48.936	ENSPFOG00000017913	-	100	46.207	Poecilia_formosa
ENSAMXG00000038156	-	58	54.595	ENSPFOG00000005463	-	96	54.595	Poecilia_formosa
ENSAMXG00000038156	-	52	48.241	ENSPFOG00000001339	-	100	48.515	Poecilia_formosa
ENSAMXG00000038156	-	50	45.699	ENSPFOG00000024470	-	74	45.699	Poecilia_formosa
ENSAMXG00000038156	-	56	52.795	ENSPFOG00000005449	-	99	52.795	Poecilia_formosa
ENSAMXG00000038156	-	58	38.967	ENSPLAG00000000470	-	63	40.223	Poecilia_latipinna
ENSAMXG00000038156	-	54	49.708	ENSPLAG00000020794	-	67	49.708	Poecilia_latipinna
ENSAMXG00000038156	-	65	49.749	ENSPMEG00000023808	-	90	48.000	Poecilia_mexicana
ENSAMXG00000038156	-	58	55.135	ENSPREG00000020014	-	88	55.135	Poecilia_reticulata
ENSAMXG00000038156	-	97	75.401	ENSPNAG00000021765	-	92	75.401	Pygocentrus_nattereri
ENSAMXG00000038156	-	69	63.978	ENSPNAG00000005857	-	88	63.978	Pygocentrus_nattereri
ENSAMXG00000038156	-	54	66.332	ENSPNAG00000019534	-	89	66.332	Pygocentrus_nattereri
ENSAMXG00000038156	-	54	42.045	ENSSFOG00015017155	-	87	35.859	Scleropages_formosus
ENSAMXG00000038156	-	84	54.255	ENSSDUG00000007336	-	89	54.255	Seriola_dumerili
ENSAMXG00000038156	-	84	54.255	ENSSLDG00000016317	-	87	54.255	Seriola_lalandi_dorsalis
ENSAMXG00000038156	-	82	51.852	ENSSLDG00000005850	-	92	52.980	Seriola_lalandi_dorsalis
ENSAMXG00000038156	-	59	40.341	ENSSPAG00000005739	-	50	44.578	Stegastes_partitus
ENSAMXG00000038156	-	63	50.273	ENSXETG00000002717	-	99	50.273	Xenopus_tropicalis
ENSAMXG00000038156	-	59	58.378	ENSXETG00000023597	-	99	58.378	Xenopus_tropicalis
ENSAMXG00000038156	-	80	58.919	ENSXETG00000023643	znf484	99	58.919	Xenopus_tropicalis
ENSAMXG00000038156	-	62	53.266	ENSXETG00000027149	-	100	53.266	Xenopus_tropicalis
ENSAMXG00000038156	-	66	51.351	ENSXCOG00000001200	-	86	51.351	Xiphophorus_couchianus
ENSAMXG00000038156	-	50	48.980	ENSXCOG00000016860	-	97	48.485	Xiphophorus_couchianus
ENSAMXG00000038156	-	55	55.769	ENSXCOG00000007406	-	99	55.769	Xiphophorus_couchianus
ENSAMXG00000038156	-	59	57.838	ENSXMAG00000026477	-	71	57.838	Xiphophorus_maculatus
ENSAMXG00000038156	-	50	55.625	ENSXMAG00000020039	-	91	57.143	Xiphophorus_maculatus
ENSAMXG00000038156	-	59	50.267	ENSXMAG00000026679	-	97	52.432	Xiphophorus_maculatus
ENSAMXG00000038156	-	54	54.891	ENSXMAG00000024641	-	96	54.891	Xiphophorus_maculatus
ENSAMXG00000038156	-	86	52.660	ENSXMAG00000027906	-	94	52.660	Xiphophorus_maculatus