EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000038243 (Gene tree)
Gene ID: 103040755
Gene Symbol: si:dkey-16l2.16
Alias: -
Full Name: ras-related protein Rab-35-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 18584 bases
Position: chr2:14829365-14847948
Accession: 103040755
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000040121	MMR_HSR1	PF01926.23	2.1e-07	1	1
ENSAMXP00000036411	MMR_HSR1	PF01926.23	6.1e-07	1	1
ENSAMXP00000040704	MMR_HSR1	PF01926.23	9.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000047152	-	3745	XM_022677448	ENSAMXP00000036411	209 (aa)	XP_022533169	UPI000BBD8F8F
ENSAMXT00000044468	-	3326	-	ENSAMXP00000040704	244 (aa)	-	-
ENSAMXT00000042167	-	381	-	ENSAMXP00000040121	126 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000038243's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000038243's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000038243	si:dkey-16l2.16	88	49.558	ENSAMXG00000024632	rab11al	79	45.399
ENSAMXG00000038243	si:dkey-16l2.16	95	34.762	ENSAMXG00000043003	rab34a	73	35.897
ENSAMXG00000038243	si:dkey-16l2.16	94	46.218	ENSAMXG00000040286	rab33ba	77	42.391
ENSAMXG00000038243	si:dkey-16l2.16	90	67.826	ENSAMXG00000034850	-	80	61.728
ENSAMXG00000038243	si:dkey-16l2.16	93	39.316	ENSAMXG00000032547	rab6a	83	38.983
ENSAMXG00000038243	si:dkey-16l2.16	92	85.345	ENSAMXG00000040604	-	92	73.514
ENSAMXG00000038243	si:dkey-16l2.16	82	56.311	ENSAMXG00000042419	rab3c	77	46.108
ENSAMXG00000038243	si:dkey-16l2.16	71	37.778	ENSAMXG00000033069	si:cabz01085950.1	70	34.722
ENSAMXG00000038243	si:dkey-16l2.16	92	49.573	ENSAMXG00000033470	RAB15	82	45.087
ENSAMXG00000038243	si:dkey-16l2.16	92	51.282	ENSAMXG00000043951	rab15	82	47.126
ENSAMXG00000038243	si:dkey-16l2.16	96	37.811	ENSAMXG00000037267	-	82	41.279
ENSAMXG00000038243	si:dkey-16l2.16	91	37.755	ENSAMXG00000002254	-	88	38.144
ENSAMXG00000038243	si:dkey-16l2.16	84	47.170	ENSAMXG00000036330	RAB38	78	42.857
ENSAMXG00000038243	si:dkey-16l2.16	96	35.266	ENSAMXG00000025889	RAB9A	86	37.714
ENSAMXG00000038243	si:dkey-16l2.16	96	36.816	ENSAMXG00000043717	rab5c	76	41.071
ENSAMXG00000038243	si:dkey-16l2.16	96	35.749	ENSAMXG00000026059	RAB9A	87	35.429
ENSAMXG00000038243	si:dkey-16l2.16	93	41.880	ENSAMXG00000004630	rab6ba	81	39.610
ENSAMXG00000038243	si:dkey-16l2.16	98	40.777	ENSAMXG00000040879	rab25a	74	46.541
ENSAMXG00000038243	si:dkey-16l2.16	82	33.143	ENSAMXG00000010919	mras	86	32.967
ENSAMXG00000038243	si:dkey-16l2.16	84	31.250	ENSAMXG00000014960	rab23	78	33.750
ENSAMXG00000038243	si:dkey-16l2.16	78	32.653	ENSAMXG00000033390	rap1aa	78	32.468
ENSAMXG00000038243	si:dkey-16l2.16	83	33.333	ENSAMXG00000040611	rabl2	76	30.814
ENSAMXG00000038243	si:dkey-16l2.16	79	43.434	ENSAMXG00000032027	rab7a	81	38.462
ENSAMXG00000038243	si:dkey-16l2.16	84	52.830	ENSAMXG00000009935	rab30	72	47.191
ENSAMXG00000038243	si:dkey-16l2.16	72	38.462	ENSAMXG00000029130	-	79	34.667
ENSAMXG00000038243	si:dkey-16l2.16	77	56.122	ENSAMXG00000003717	rab39bb	82	44.571
ENSAMXG00000038243	si:dkey-16l2.16	63	35.000	ENSAMXG00000034370	-	51	30.928
ENSAMXG00000038243	si:dkey-16l2.16	98	41.827	ENSAMXG00000029712	rab25b	82	44.571
ENSAMXG00000038243	si:dkey-16l2.16	77	30.928	ENSAMXG00000018516	arl3l2	59	30.172
ENSAMXG00000038243	si:dkey-16l2.16	83	50.467	ENSAMXG00000037428	-	95	38.916
ENSAMXG00000038243	si:dkey-16l2.16	83	34.615	ENSAMXG00000035885	hrasa	87	34.940
ENSAMXG00000038243	si:dkey-16l2.16	81	60.784	ENSAMXG00000042073	rab18b	84	44.828
ENSAMXG00000038243	si:dkey-16l2.16	81	47.059	ENSAMXG00000036179	rab5aa	78	42.857
ENSAMXG00000038243	si:dkey-16l2.16	83	71.429	ENSAMXG00000032564	rab1ab	93	55.729
ENSAMXG00000038243	si:dkey-16l2.16	77	31.959	ENSAMXG00000043381	zgc:110197	65	30.172
ENSAMXG00000038243	si:dkey-16l2.16	83	46.667	ENSAMXG00000009640	rab14	76	42.683
ENSAMXG00000038243	si:dkey-16l2.16	75	39.362	ENSAMXG00000033764	si:ch73-116o1.2	86	32.418
ENSAMXG00000038243	si:dkey-16l2.16	99	33.333	ENSAMXG00000017266	rab36	76	34.848
ENSAMXG00000038243	si:dkey-16l2.16	83	50.962	ENSAMXG00000039737	RAB19	77	44.910
ENSAMXG00000038243	si:dkey-16l2.16	98	41.148	ENSAMXG00000042655	rab11bb	80	44.828
ENSAMXG00000038243	si:dkey-16l2.16	81	47.059	ENSAMXG00000035919	rab5ab	77	42.515
ENSAMXG00000038243	si:dkey-16l2.16	89	46.429	ENSAMXG00000004882	rab12	75	43.478
ENSAMXG00000038243	si:dkey-16l2.16	82	34.951	ENSAMXG00000041488	dnajc27	59	34.161
ENSAMXG00000038243	si:dkey-16l2.16	79	45.455	ENSAMXG00000031957	zgc:100918	84	38.150
ENSAMXG00000038243	si:dkey-16l2.16	85	41.121	ENSAMXG00000026476	rab9b	79	36.464
ENSAMXG00000038243	si:dkey-16l2.16	83	45.714	ENSAMXG00000040126	-	62	42.012
ENSAMXG00000038243	si:dkey-16l2.16	83	50.000	ENSAMXG00000032729	rab42a	82	43.429
ENSAMXG00000038243	si:dkey-16l2.16	84	68.868	ENSAMXG00000003547	rab1ba	73	60.123
ENSAMXG00000038243	si:dkey-16l2.16	83	34.615	ENSAMXG00000033907	hrasb	87	34.940
ENSAMXG00000038243	si:dkey-16l2.16	81	31.373	ENSAMXG00000031771	arl5c	54	31.373
ENSAMXG00000038243	si:dkey-16l2.16	90	32.812	ENSAMXG00000006018	rab34b	79	33.498
ENSAMXG00000038243	si:dkey-16l2.16	78	31.633	ENSAMXG00000010334	rras	81	31.765
ENSAMXG00000038243	si:dkey-16l2.16	90	69.565	ENSAMXG00000039486	zgc:171927	79	60.843
ENSAMXG00000038243	si:dkey-16l2.16	83	35.429	ENSAMXG00000017217	kras	95	33.702
ENSAMXG00000038243	si:dkey-16l2.16	79	43.000	ENSAMXG00000032663	si:dkey-13a21.4	86	37.037
ENSAMXG00000038243	si:dkey-16l2.16	76	34.579	ENSAMXG00000042798	arfrp1	64	31.818
ENSAMXG00000038243	si:dkey-16l2.16	98	41.148	ENSAMXG00000037623	-	80	44.828
ENSAMXG00000038243	si:dkey-16l2.16	88	54.054	ENSAMXG00000030712	rab13	87	48.864
ENSAMXG00000038243	si:dkey-16l2.16	86	50.926	ENSAMXG00000036772	rab2a	75	46.541
ENSAMXG00000038243	si:dkey-16l2.16	92	85.345	ENSAMXG00000039865	rab35b	96	73.196
ENSAMXG00000038243	si:dkey-16l2.16	77	31.959	ENSAMXG00000037720	arl3	61	30.172
ENSAMXG00000038243	si:dkey-16l2.16	93	40.171	ENSAMXG00000033216	rab41	80	39.744
ENSAMXG00000038243	si:dkey-16l2.16	77	56.122	ENSAMXG00000041657	rab39ba	81	45.087
ENSAMXG00000038243	si:dkey-16l2.16	90	50.877	ENSAMXG00000003155	rab11a	81	45.977
ENSAMXG00000038243	si:dkey-16l2.16	83	35.577	ENSAMXG00000012327	nras	89	35.185
ENSAMXG00000038243	si:dkey-16l2.16	81	56.311	ENSAMXG00000040460	zgc:101559	75	46.995
ENSAMXG00000038243	si:dkey-16l2.16	80	46.535	ENSAMXG00000013054	rab22a	96	37.566
ENSAMXG00000038243	si:dkey-16l2.16	87	38.182	ENSAMXG00000034227	rab32b	89	32.632

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000038243	si:dkey-16l2.16	100	94.737	ENSAPOG00000008263	si:dkey-16l2.16	100	94.737	Acanthochromis_polyacanthus
ENSAMXG00000038243	si:dkey-16l2.16	100	95.215	ENSAOCG00000016825	si:dkey-16l2.16	100	95.215	Amphiprion_ocellaris
ENSAMXG00000038243	si:dkey-16l2.16	100	95.215	ENSAPEG00000006500	si:dkey-16l2.16	100	95.215	Amphiprion_percula
ENSAMXG00000038243	si:dkey-16l2.16	100	94.258	ENSATEG00000019238	si:dkey-16l2.16	100	94.258	Anabas_testudineus
ENSAMXG00000038243	si:dkey-16l2.16	100	94.737	ENSACLG00000018721	si:dkey-16l2.16	100	94.737	Astatotilapia_calliptera
ENSAMXG00000038243	si:dkey-16l2.16	95	98.333	ENSCSEG00000009988	si:dkey-16l2.16	92	98.333	Cynoglossus_semilaevis
ENSAMXG00000038243	si:dkey-16l2.16	100	93.301	ENSCVAG00000003537	si:dkey-16l2.16	100	93.301	Cyprinodon_variegatus
ENSAMXG00000038243	si:dkey-16l2.16	100	96.172	ENSDARG00000037967	si:dkey-16l2.16	100	97.479	Danio_rerio
ENSAMXG00000038243	si:dkey-16l2.16	93	96.581	ENSELUG00000023247	si:dkey-16l2.16	99	87.981	Esox_lucius
ENSAMXG00000038243	si:dkey-16l2.16	98	92.683	ENSFHEG00000000767	si:dkey-16l2.16	78	94.215	Fundulus_heteroclitus
ENSAMXG00000038243	si:dkey-16l2.16	94	96.639	ENSGMOG00000015174	si:dkey-16l2.16	99	85.185	Gadus_morhua
ENSAMXG00000038243	si:dkey-16l2.16	94	96.610	ENSGAFG00000005388	si:dkey-16l2.16	100	87.081	Gambusia_affinis
ENSAMXG00000038243	si:dkey-16l2.16	100	94.258	ENSGACG00000014915	si:dkey-16l2.16	98	94.258	Gasterosteus_aculeatus
ENSAMXG00000038243	si:dkey-16l2.16	100	95.215	ENSHBUG00000019261	si:dkey-16l2.16	100	95.215	Haplochromis_burtoni
ENSAMXG00000038243	si:dkey-16l2.16	100	94.737	ENSHCOG00000006538	si:dkey-16l2.16	100	94.737	Hippocampus_comes
ENSAMXG00000038243	si:dkey-16l2.16	100	90.909	ENSKMAG00000003494	si:dkey-16l2.16	100	90.909	Kryptolebias_marmoratus
ENSAMXG00000038243	si:dkey-16l2.16	100	95.215	ENSLBEG00000007681	si:dkey-16l2.16	100	95.215	Labrus_bergylta
ENSAMXG00000038243	si:dkey-16l2.16	100	93.301	ENSMAMG00000019230	si:dkey-16l2.16	100	93.301	Mastacembelus_armatus
ENSAMXG00000038243	si:dkey-16l2.16	100	94.737	ENSMZEG00005002081	si:dkey-16l2.16	100	94.737	Maylandia_zebra
ENSAMXG00000038243	si:dkey-16l2.16	99	94.175	ENSMMOG00000020140	si:dkey-16l2.16	97	94.175	Mola_mola
ENSAMXG00000038243	si:dkey-16l2.16	100	93.301	ENSMALG00000014727	si:dkey-16l2.16	99	93.301	Monopterus_albus
ENSAMXG00000038243	si:dkey-16l2.16	100	95.215	ENSNBRG00000008930	si:dkey-16l2.16	100	95.215	Neolamprologus_brichardi
ENSAMXG00000038243	si:dkey-16l2.16	100	94.737	ENSONIG00000009443	si:dkey-16l2.16	100	94.737	Oreochromis_niloticus
ENSAMXG00000038243	si:dkey-16l2.16	100	89.474	ENSORLG00000001098	si:dkey-16l2.16	99	89.474	Oryzias_latipes
ENSAMXG00000038243	si:dkey-16l2.16	100	89.474	ENSORLG00020000867	si:dkey-16l2.16	99	89.474	Oryzias_latipes_hni
ENSAMXG00000038243	si:dkey-16l2.16	94	95.763	ENSOMEG00000015474	si:dkey-16l2.16	100	90.431	Oryzias_melastigma
ENSAMXG00000038243	si:dkey-16l2.16	100	93.780	ENSPKIG00000005686	-	100	93.780	Paramormyrops_kingsleyae
ENSAMXG00000038243	si:dkey-16l2.16	94	93.220	ENSPKIG00000018888	si:dkey-16l2.16	94	84.184	Paramormyrops_kingsleyae
ENSAMXG00000038243	si:dkey-16l2.16	100	92.344	ENSPMGG00000000751	si:dkey-16l2.16	100	92.344	Periophthalmus_magnuspinnatus
ENSAMXG00000038243	si:dkey-16l2.16	94	96.610	ENSPFOG00000004746	si:dkey-16l2.16	100	87.560	Poecilia_formosa
ENSAMXG00000038243	si:dkey-16l2.16	94	96.610	ENSPLAG00000021043	si:dkey-16l2.16	100	87.081	Poecilia_latipinna
ENSAMXG00000038243	si:dkey-16l2.16	94	96.610	ENSPMEG00000007165	si:dkey-16l2.16	100	87.560	Poecilia_mexicana
ENSAMXG00000038243	si:dkey-16l2.16	94	96.610	ENSPREG00000005323	si:dkey-16l2.16	100	87.081	Poecilia_reticulata
ENSAMXG00000038243	si:dkey-16l2.16	100	95.215	ENSPNYG00000009490	si:dkey-16l2.16	100	95.215	Pundamilia_nyererei
ENSAMXG00000038243	si:dkey-16l2.16	100	97.608	ENSPNAG00000018986	si:dkey-16l2.16	100	97.608	Pygocentrus_nattereri
ENSAMXG00000038243	si:dkey-16l2.16	100	94.258	ENSSFOG00015021448	-	100	94.258	Scleropages_formosus
ENSAMXG00000038243	si:dkey-16l2.16	94	88.983	ENSSFOG00015006414	-	93	81.122	Scleropages_formosus
ENSAMXG00000038243	si:dkey-16l2.16	100	88.995	ENSSMAG00000011769	si:dkey-16l2.16	98	87.156	Scophthalmus_maximus
ENSAMXG00000038243	si:dkey-16l2.16	100	94.737	ENSSDUG00000005719	si:dkey-16l2.16	100	94.737	Seriola_dumerili
ENSAMXG00000038243	si:dkey-16l2.16	100	94.737	ENSSLDG00000003631	si:dkey-16l2.16	100	94.737	Seriola_lalandi_dorsalis
ENSAMXG00000038243	si:dkey-16l2.16	100	94.737	ENSSPAG00000006302	si:dkey-16l2.16	100	94.737	Stegastes_partitus
ENSAMXG00000038243	si:dkey-16l2.16	100	93.780	ENSTRUG00000025076	si:dkey-16l2.16	100	93.780	Takifugu_rubripes
ENSAMXG00000038243	si:dkey-16l2.16	100	94.737	ENSTNIG00000011300	si:dkey-16l2.16	100	94.737	Tetraodon_nigroviridis
ENSAMXG00000038243	si:dkey-16l2.16	94	96.610	ENSXMAG00000021767	si:dkey-16l2.16	100	87.560	Xiphophorus_maculatus