EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000038346 (Gene tree)
Gene ID: 103035367
Gene Symbol: zgc:56699
Alias: fk52a03|wu:fk52a03
Full Name: gametocyte-specific factor 1-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 20793 bases
Position: chr15:3493521-3514313
Accession: 103035367
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000034350	zf-U11-48K	PF05253.12	6.5e-20	1	2
ENSAMXP00000034350	zf-U11-48K	PF05253.12	6.5e-20	2	2
ENSAMXP00000005634	zf-U11-48K	PF05253.12	9.4e-20	1	2
ENSAMXP00000005634	zf-U11-48K	PF05253.12	9.4e-20	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000005634	-	702	XM_022676833	ENSAMXP00000005634	210 (aa)	XP_022532554	W5KDH3
ENSAMXT00000031238	-	4445	XM_022676835	ENSAMXP00000034350	181 (aa)	XP_022532556	UPI000BBE01BF

Gene Model

Click here to download ENSAMXG00000038346's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000038346's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000038346	zgc:56699	83	57.895	ENSAMXG00000036095	-	63	59.477

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000038346	zgc:56699	98	50.847	ENSAPOG00000021951	-	97	50.847	Acanthochromis_polyacanthus
ENSAMXG00000038346	zgc:56699	83	54.248	ENSAPOG00000000311	-	85	54.248	Acanthochromis_polyacanthus
ENSAMXG00000038346	zgc:56699	99	50.273	ENSACIG00000013400	zgc:56699	97	50.273	Amphilophus_citrinellus
ENSAMXG00000038346	zgc:56699	98	53.107	ENSAOCG00000013650	-	97	53.107	Amphiprion_ocellaris
ENSAMXG00000038346	zgc:56699	98	45.763	ENSAPEG00000006689	zgc:56699	96	45.763	Amphiprion_percula
ENSAMXG00000038346	zgc:56699	99	61.878	ENSATEG00000024058	zgc:56699	97	61.878	Anabas_testudineus
ENSAMXG00000038346	zgc:56699	99	52.198	ENSACLG00000023562	zgc:56699	90	52.198	Astatotilapia_calliptera
ENSAMXG00000038346	zgc:56699	99	53.039	ENSCSEG00000021520	zgc:56699	83	53.039	Cynoglossus_semilaevis
ENSAMXG00000038346	zgc:56699	81	49.660	ENSCVAG00000009972	zgc:56699	74	49.660	Cyprinodon_variegatus
ENSAMXG00000038346	zgc:56699	99	66.667	ENSDARG00000000887	zgc:56699	99	66.667	Danio_rerio
ENSAMXG00000038346	zgc:56699	83	55.195	ENSDARG00000099586	CR382383.2	85	55.195	Danio_rerio
ENSAMXG00000038346	zgc:56699	53	36.458	FBgn0036826	arx	54	36.458	Drosophila_melanogaster
ENSAMXG00000038346	zgc:56699	63	46.552	ENSEBUG00000005577	-	61	46.552	Eptatretus_burgeri
ENSAMXG00000038346	zgc:56699	99	64.835	ENSELUG00000003242	gtsf1	99	64.835	Esox_lucius
ENSAMXG00000038346	zgc:56699	99	53.631	ENSFHEG00000006036	zgc:56699	97	46.927	Fundulus_heteroclitus
ENSAMXG00000038346	zgc:56699	80	49.306	ENSGMOG00000007295	zgc:56699	93	49.306	Gadus_morhua
ENSAMXG00000038346	zgc:56699	66	42.742	ENSGALG00000035365	-	70	42.742	Gallus_gallus
ENSAMXG00000038346	zgc:56699	98	53.672	ENSGAFG00000020743	zgc:56699	97	53.672	Gambusia_affinis
ENSAMXG00000038346	zgc:56699	99	52.198	ENSHBUG00000005327	zgc:56699	98	52.198	Haplochromis_burtoni
ENSAMXG00000038346	zgc:56699	98	47.191	ENSHCOG00000010296	-	99	47.191	Hippocampus_comes
ENSAMXG00000038346	zgc:56699	99	58.101	ENSIPUG00000011498	zgc:56699	96	58.101	Ictalurus_punctatus
ENSAMXG00000038346	zgc:56699	99	57.459	ENSLBEG00000015981	zgc:56699	100	48.066	Labrus_bergylta
ENSAMXG00000038346	zgc:56699	82	52.703	ENSLOCG00000004469	zgc:56699	99	54.054	Lepisosteus_oculatus
ENSAMXG00000038346	zgc:56699	98	55.056	ENSMAMG00000001846	zgc:56699	97	55.056	Mastacembelus_armatus
ENSAMXG00000038346	zgc:56699	99	52.198	ENSMZEG00005026479	zgc:56699	90	52.198	Maylandia_zebra
ENSAMXG00000038346	zgc:56699	99	45.455	ENSMMOG00000017331	zgc:56699	97	45.455	Mola_mola
ENSAMXG00000038346	zgc:56699	99	51.648	ENSNBRG00000006336	zgc:56699	98	51.648	Neolamprologus_brichardi
ENSAMXG00000038346	zgc:56699	99	52.747	ENSONIG00000016720	zgc:56699	90	52.747	Oreochromis_niloticus
ENSAMXG00000038346	zgc:56699	61	42.609	ENSOANG00000030381	-	74	42.609	Ornithorhynchus_anatinus
ENSAMXG00000038346	zgc:56699	86	52.866	ENSORLG00000025877	-	91	52.866	Oryzias_latipes
ENSAMXG00000038346	zgc:56699	99	49.721	ENSORLG00000015258	-	97	49.721	Oryzias_latipes
ENSAMXG00000038346	zgc:56699	99	48.634	ENSORLG00020010990	-	97	48.634	Oryzias_latipes_hni
ENSAMXG00000038346	zgc:56699	86	52.866	ENSORLG00020011013	-	91	52.866	Oryzias_latipes_hni
ENSAMXG00000038346	zgc:56699	99	48.603	ENSORLG00015004961	zgc:56699	97	48.603	Oryzias_latipes_hsok
ENSAMXG00000038346	zgc:56699	99	54.144	ENSOMEG00000021739	-	98	54.144	Oryzias_melastigma
ENSAMXG00000038346	zgc:56699	99	45.856	ENSOMEG00000021773	-	97	45.856	Oryzias_melastigma
ENSAMXG00000038346	zgc:56699	81	55.333	ENSOMEG00000013200	-	93	55.333	Oryzias_melastigma
ENSAMXG00000038346	zgc:56699	99	54.444	ENSPKIG00000017039	zgc:56699	99	54.444	Paramormyrops_kingsleyae
ENSAMXG00000038346	zgc:56699	98	49.724	ENSPMGG00000023241	zgc:56699	96	49.724	Periophthalmus_magnuspinnatus
ENSAMXG00000038346	zgc:56699	62	42.975	ENSPMAG00000009653	-	93	42.975	Petromyzon_marinus
ENSAMXG00000038346	zgc:56699	98	53.107	ENSPFOG00000009204	zgc:56699	97	53.631	Poecilia_formosa
ENSAMXG00000038346	zgc:56699	98	48.588	ENSPLAG00000009088	zgc:56699	96	49.162	Poecilia_latipinna
ENSAMXG00000038346	zgc:56699	98	53.107	ENSPMEG00000001443	zgc:56699	97	53.631	Poecilia_mexicana
ENSAMXG00000038346	zgc:56699	98	54.237	ENSPREG00000000745	zgc:56699	97	54.237	Poecilia_reticulata
ENSAMXG00000038346	zgc:56699	99	52.198	ENSPNYG00000002811	zgc:56699	98	52.198	Pundamilia_nyererei
ENSAMXG00000038346	zgc:56699	99	82.320	ENSPNAG00000005165	zgc:56699	99	82.320	Pygocentrus_nattereri
ENSAMXG00000038346	zgc:56699	85	57.792	ENSSFOG00015021600	zgc:56699	84	57.792	Scleropages_formosus
ENSAMXG00000038346	zgc:56699	99	53.631	ENSSMAG00000020886	zgc:56699	97	53.631	Scophthalmus_maximus
ENSAMXG00000038346	zgc:56699	99	57.222	ENSSDUG00000002033	zgc:56699	97	57.222	Seriola_dumerili
ENSAMXG00000038346	zgc:56699	99	56.667	ENSSLDG00000014113	zgc:56699	97	56.667	Seriola_lalandi_dorsalis
ENSAMXG00000038346	zgc:56699	80	61.806	ENSSPAG00000019854	-	98	57.062	Stegastes_partitus
ENSAMXG00000038346	zgc:56699	82	54.902	ENSSPAG00000010005	-	96	54.902	Stegastes_partitus
ENSAMXG00000038346	zgc:56699	99	46.927	ENSTRUG00000015537	zgc:56699	100	46.448	Takifugu_rubripes
ENSAMXG00000038346	zgc:56699	84	52.632	ENSTNIG00000012515	zgc:56699	100	52.632	Tetraodon_nigroviridis
ENSAMXG00000038346	zgc:56699	98	49.718	ENSXCOG00000014400	zgc:56699	86	49.718	Xiphophorus_couchianus
ENSAMXG00000038346	zgc:56699	97	54.286	ENSXMAG00000011692	zgc:56699	96	54.286	Xiphophorus_maculatus