EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000038507 (Gene tree)
Gene ID: 107197655
Gene Symbol: -
Alias: -
Full Name: zinc finger protein 420-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 6683 bases
Position: chr11:8314224-8320906
Accession: 107197655
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000043474	zf-C2H2	PF00096.26	4e-33	1	5
ENSAMXP00000043474	zf-C2H2	PF00096.26	4e-33	2	5
ENSAMXP00000043474	zf-C2H2	PF00096.26	4e-33	3	5
ENSAMXP00000043474	zf-C2H2	PF00096.26	4e-33	4	5
ENSAMXP00000043474	zf-C2H2	PF00096.26	4e-33	5	5
ENSAMXP00000052570	zf-C2H2	PF00096.26	4e-33	1	5
ENSAMXP00000052570	zf-C2H2	PF00096.26	4e-33	2	5
ENSAMXP00000052570	zf-C2H2	PF00096.26	4e-33	3	5
ENSAMXP00000052570	zf-C2H2	PF00096.26	4e-33	4	5
ENSAMXP00000052570	zf-C2H2	PF00096.26	4e-33	5	5
ENSAMXP00000043474	zf-met	PF12874.7	2.4e-08	1	1
ENSAMXP00000052570	zf-met	PF12874.7	2.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000038812	-	3148	-	ENSAMXP00000043474	411 (aa)	-	UPI000BBDF38D
ENSAMXT00000040175	-	3635	XM_022674262	ENSAMXP00000052570	411 (aa)	XP_022529983	UPI000BBDF38D

Gene Model

Click here to download ENSAMXG00000038507's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000038507's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000038507	-	86	31.304	ENSAMXG00000043978	-	88	31.304
ENSAMXG00000038507	-	75	40.260	ENSAMXG00000009558	-	87	40.260
ENSAMXG00000038507	-	76	43.373	ENSAMXG00000038280	-	87	43.373
ENSAMXG00000038507	-	98	41.860	ENSAMXG00000034096	-	84	41.860
ENSAMXG00000038507	-	85	41.860	ENSAMXG00000040630	-	97	40.000
ENSAMXG00000038507	-	86	39.773	ENSAMXG00000029783	-	82	39.773
ENSAMXG00000038507	-	75	41.892	ENSAMXG00000025455	-	99	41.892
ENSAMXG00000038507	-	78	33.962	ENSAMXG00000039879	-	99	33.962
ENSAMXG00000038507	-	75	33.333	ENSAMXG00000037717	-	94	33.333
ENSAMXG00000038507	-	76	38.202	ENSAMXG00000017199	-	50	38.750
ENSAMXG00000038507	-	86	38.384	ENSAMXG00000012589	-	84	38.384
ENSAMXG00000038507	-	75	30.928	ENSAMXG00000036762	-	97	30.928
ENSAMXG00000038507	-	78	31.405	ENSAMXG00000029960	-	87	31.405
ENSAMXG00000038507	-	76	46.774	ENSAMXG00000037923	-	99	46.774
ENSAMXG00000038507	-	84	37.363	ENSAMXG00000039004	-	93	37.363
ENSAMXG00000038507	-	82	34.545	ENSAMXG00000017959	-	98	34.545
ENSAMXG00000038507	-	88	39.080	ENSAMXG00000035875	-	99	39.080
ENSAMXG00000038507	-	77	37.255	ENSAMXG00000017609	-	77	37.255
ENSAMXG00000038507	-	81	34.783	ENSAMXG00000035127	-	88	36.082
ENSAMXG00000038507	-	85	47.541	ENSAMXG00000037143	-	93	47.541
ENSAMXG00000038507	-	84	44.444	ENSAMXG00000037760	-	98	44.444
ENSAMXG00000038507	-	76	40.476	ENSAMXG00000033500	-	88	40.476
ENSAMXG00000038507	-	78	32.381	ENSAMXG00000001626	-	92	32.381
ENSAMXG00000038507	-	78	38.710	ENSAMXG00000029828	-	93	38.710
ENSAMXG00000038507	-	75	39.773	ENSAMXG00000039432	-	99	39.773
ENSAMXG00000038507	-	75	39.773	ENSAMXG00000031794	-	99	39.773
ENSAMXG00000038507	-	75	30.579	ENSAMXG00000011804	-	86	30.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000038507	-	85	38.857	ENSCSEG00000012798	-	99	38.857	Cynoglossus_semilaevis
ENSAMXG00000038507	-	98	50.124	ENSELUG00000009258	-	98	50.124	Esox_lucius
ENSAMXG00000038507	-	97	60.633	ENSELUG00000020907	-	100	58.478	Esox_lucius
ENSAMXG00000038507	-	98	60.391	ENSFHEG00000005807	-	97	60.880	Fundulus_heteroclitus
ENSAMXG00000038507	-	99	61.391	ENSGAFG00000003348	-	98	61.631	Gambusia_affinis
ENSAMXG00000038507	-	100	74.638	ENSIPUG00000002513	-	100	74.702	Ictalurus_punctatus
ENSAMXG00000038507	-	99	61.538	ENSKMAG00000014028	-	91	62.019	Kryptolebias_marmoratus
ENSAMXG00000038507	-	99	59.102	ENSMMOG00000009859	-	100	59.906	Mola_mola
ENSAMXG00000038507	-	98	60.096	ENSORLG00000023072	-	98	60.096	Oryzias_latipes
ENSAMXG00000038507	-	98	60.337	ENSORLG00020002684	-	98	60.817	Oryzias_latipes_hni
ENSAMXG00000038507	-	98	60.096	ENSORLG00015018897	-	98	60.577	Oryzias_latipes_hsok
ENSAMXG00000038507	-	98	58.612	ENSOMEG00000010520	-	93	60.287	Oryzias_melastigma
ENSAMXG00000038507	-	99	61.779	ENSPLAG00000005849	-	98	61.779	Poecilia_latipinna
ENSAMXG00000038507	-	99	61.391	ENSPMEG00000020957	-	98	61.631	Poecilia_mexicana
ENSAMXG00000038507	-	99	61.722	ENSPREG00000007939	-	98	61.722	Poecilia_reticulata
ENSAMXG00000038507	-	100	83.495	ENSPNAG00000003839	-	100	83.495	Pygocentrus_nattereri
ENSAMXG00000038507	-	98	64.320	ENSSFOG00015019679	-	98	65.291	Scleropages_formosus
ENSAMXG00000038507	-	99	60.859	ENSXCOG00000015432	-	98	61.337	Xiphophorus_couchianus
ENSAMXG00000038507	-	99	61.337	ENSXMAG00000029995	-	88	61.814	Xiphophorus_maculatus