EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000038544 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 9545 bases
Position: chr10:33767781-33777325
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000054696	zf-CCHC	PF00098.23	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000055664	-	2022	-	ENSAMXP00000054696	673 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000038544's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000038544's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000038544	-	94	47.894	ENSAMXG00000033831	-	80	47.894
ENSAMXG00000038544	-	86	48.805	ENSAMXG00000029689	-	77	48.253
ENSAMXG00000038544	-	94	99.842	ENSAMXG00000030934	-	96	99.842
ENSAMXG00000038544	-	93	44.304	ENSAMXG00000041694	-	64	44.304
ENSAMXG00000038544	-	93	46.741	ENSAMXG00000036897	-	83	46.741
ENSAMXG00000038544	-	81	48.352	ENSAMXG00000040915	-	72	44.866
ENSAMXG00000038544	-	94	46.322	ENSAMXG00000042699	-	55	46.262
ENSAMXG00000038544	-	88	49.580	ENSAMXG00000043875	-	85	49.580

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000038544	-	54	33.588	ENSAPOG00000012172	-	68	32.908	Acanthochromis_polyacanthus
ENSAMXG00000038544	-	80	30.517	ENSACAG00000029367	-	78	30.640	Anolis_carolinensis
ENSAMXG00000038544	-	84	47.872	ENSIPUG00000009957	-	84	48.050	Ictalurus_punctatus
ENSAMXG00000038544	-	84	44.681	ENSIPUG00000000467	-	75	44.681	Ictalurus_punctatus
ENSAMXG00000038544	-	86	46.484	ENSIPUG00000023478	-	85	46.484	Ictalurus_punctatus
ENSAMXG00000038544	-	84	47.359	ENSIPUG00000020583	-	79	47.359	Ictalurus_punctatus
ENSAMXG00000038544	-	88	36.000	ENSKMAG00000021728	-	87	36.000	Kryptolebias_marmoratus
ENSAMXG00000038544	-	93	37.599	ENSORLG00000027546	-	84	37.599	Oryzias_latipes
ENSAMXG00000038544	-	86	33.333	ENSORLG00000004601	-	71	33.333	Oryzias_latipes
ENSAMXG00000038544	-	88	36.319	ENSORLG00000025074	-	84	36.378	Oryzias_latipes
ENSAMXG00000038544	-	93	36.940	ENSORLG00020019360	-	86	36.940	Oryzias_latipes_hni
ENSAMXG00000038544	-	79	38.321	ENSORLG00020018037	-	77	38.838	Oryzias_latipes_hni
ENSAMXG00000038544	-	93	37.094	ENSORLG00020008270	-	85	37.094	Oryzias_latipes_hni
ENSAMXG00000038544	-	81	39.091	ENSPKIG00000021000	-	90	38.889	Paramormyrops_kingsleyae
ENSAMXG00000038544	-	85	40.870	ENSPKIG00000000452	-	86	40.870	Paramormyrops_kingsleyae
ENSAMXG00000038544	-	94	50.709	ENSPNAG00000003267	-	91	50.709	Pygocentrus_nattereri
ENSAMXG00000038544	-	90	46.952	ENSPNAG00000014076	-	91	46.952	Pygocentrus_nattereri