EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000038564 (Gene tree)
Gene ID: -
Gene Symbol: si:ch211-153b23.3
Alias: -
Full Name: uncharacterized LOC103042170
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 5333 bases
Position: chr24:19554031-19559363
Accession: 103042170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000033723	Sua5_yciO_yrdC	PF01300.18	2.5e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000037706	-	2616	XM_022683722	ENSAMXP00000033723	871 (aa)	XP_022539443	-

Gene Model

Click here to download ENSAMXG00000038564's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000038564's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000038564	si:ch211-153b23.3	72	30.294	ENSAMXG00000013879	si:ch211-153b23.4	74	30.294

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000038564	si:ch211-153b23.3	99	64.619	ENSACIG00000006968	si:ch211-153b23.3	100	64.619	Amphilophus_citrinellus
ENSAMXG00000038564	si:ch211-153b23.3	99	71.104	ENSAOCG00000010974	si:ch211-153b23.3	100	71.104	Amphiprion_ocellaris
ENSAMXG00000038564	si:ch211-153b23.3	99	70.990	ENSAPEG00000014700	si:ch211-153b23.3	100	70.990	Amphiprion_percula
ENSAMXG00000038564	si:ch211-153b23.3	99	71.348	ENSATEG00000004956	si:ch211-153b23.3	100	71.348	Anabas_testudineus
ENSAMXG00000038564	si:ch211-153b23.3	71	31.522	ENSATEG00000004948	si:ch211-153b23.4	70	31.522	Anabas_testudineus
ENSAMXG00000038564	si:ch211-153b23.3	99	70.501	ENSACLG00000005894	si:ch211-153b23.3	100	70.501	Astatotilapia_calliptera
ENSAMXG00000038564	si:ch211-153b23.3	72	30.000	ENSACLG00000005471	si:ch211-153b23.4	71	30.687	Astatotilapia_calliptera
ENSAMXG00000038564	si:ch211-153b23.3	99	69.921	ENSCSEG00000014853	si:ch211-153b23.3	100	69.580	Cynoglossus_semilaevis
ENSAMXG00000038564	si:ch211-153b23.3	75	30.689	ENSCSEG00000014838	si:ch211-153b23.4	77	30.689	Cynoglossus_semilaevis
ENSAMXG00000038564	si:ch211-153b23.3	74	31.579	ENSCVAG00000021145	si:ch211-153b23.4	80	31.579	Cyprinodon_variegatus
ENSAMXG00000038564	si:ch211-153b23.3	99	71.982	ENSCVAG00000021124	si:ch211-153b23.3	100	71.950	Cyprinodon_variegatus
ENSAMXG00000038564	si:ch211-153b23.3	99	77.588	ENSDARG00000104919	si:ch211-153b23.3	99	77.588	Danio_rerio
ENSAMXG00000038564	si:ch211-153b23.3	81	82.787	ENSELUG00000004912	si:ch211-153b23.3	99	82.787	Esox_lucius
ENSAMXG00000038564	si:ch211-153b23.3	99	72.014	ENSFHEG00000010030	si:ch211-153b23.3	99	72.014	Fundulus_heteroclitus
ENSAMXG00000038564	si:ch211-153b23.3	74	30.896	ENSFHEG00000010001	si:ch211-153b23.4	81	30.896	Fundulus_heteroclitus
ENSAMXG00000038564	si:ch211-153b23.3	99	71.510	ENSGAFG00000007455	si:ch211-153b23.3	99	71.026	Gambusia_affinis
ENSAMXG00000038564	si:ch211-153b23.3	53	34.801	ENSGACG00000018253	si:ch211-153b23.4	54	34.801	Gasterosteus_aculeatus
ENSAMXG00000038564	si:ch211-153b23.3	99	70.501	ENSHBUG00000001760	si:ch211-153b23.3	100	70.501	Haplochromis_burtoni
ENSAMXG00000038564	si:ch211-153b23.3	70	30.000	ENSHBUG00000000013	si:ch211-153b23.4	80	30.000	Haplochromis_burtoni
ENSAMXG00000038564	si:ch211-153b23.3	99	80.827	ENSIPUG00000015213	si:ch211-153b23.3	99	80.827	Ictalurus_punctatus
ENSAMXG00000038564	si:ch211-153b23.3	99	70.990	ENSKMAG00000006792	si:ch211-153b23.3	99	70.316	Kryptolebias_marmoratus
ENSAMXG00000038564	si:ch211-153b23.3	74	30.931	ENSKMAG00000006919	-	73	30.931	Kryptolebias_marmoratus
ENSAMXG00000038564	si:ch211-153b23.3	74	30.723	ENSKMAG00000006829	si:ch211-153b23.4	79	30.723	Kryptolebias_marmoratus
ENSAMXG00000038564	si:ch211-153b23.3	99	71.769	ENSLBEG00000026324	si:ch211-153b23.3	99	71.769	Labrus_bergylta
ENSAMXG00000038564	si:ch211-153b23.3	94	57.295	ENSLACG00000005800	-	99	57.177	Latimeria_chalumnae
ENSAMXG00000038564	si:ch211-153b23.3	85	61.224	ENSLOCG00000015063	si:ch211-153b23.3	98	61.224	Lepisosteus_oculatus
ENSAMXG00000038564	si:ch211-153b23.3	72	31.231	ENSMAMG00000009358	si:ch211-153b23.4	77	31.231	Mastacembelus_armatus
ENSAMXG00000038564	si:ch211-153b23.3	99	71.850	ENSMAMG00000009328	si:ch211-153b23.3	100	71.348	Mastacembelus_armatus
ENSAMXG00000038564	si:ch211-153b23.3	72	31.490	ENSMAMG00000009277	si:ch211-153b23.4	76	31.490	Mastacembelus_armatus
ENSAMXG00000038564	si:ch211-153b23.3	99	70.729	ENSMZEG00005011450	si:ch211-153b23.3	100	70.729	Maylandia_zebra
ENSAMXG00000038564	si:ch211-153b23.3	54	34.232	ENSMGAG00000005478	-	57	34.232	Meleagris_gallopavo
ENSAMXG00000038564	si:ch211-153b23.3	99	70.635	ENSMMOG00000004436	si:ch211-153b23.3	100	70.387	Mola_mola
ENSAMXG00000038564	si:ch211-153b23.3	57	33.459	ENSMMOG00000004425	si:ch211-153b23.4	64	33.459	Mola_mola
ENSAMXG00000038564	si:ch211-153b23.3	99	70.843	ENSNBRG00000013370	si:ch211-153b23.3	100	70.843	Neolamprologus_brichardi
ENSAMXG00000038564	si:ch211-153b23.3	100	70.655	ENSORLG00000006161	si:ch211-153b23.3	100	70.655	Oryzias_latipes
ENSAMXG00000038564	si:ch211-153b23.3	72	30.448	ENSORLG00020009905	si:ch211-153b23.4	71	30.495	Oryzias_latipes_hni
ENSAMXG00000038564	si:ch211-153b23.3	97	71.445	ENSORLG00020000910	si:ch211-153b23.3	100	71.445	Oryzias_latipes_hni
ENSAMXG00000038564	si:ch211-153b23.3	97	70.657	ENSORLG00015003698	si:ch211-153b23.3	100	70.657	Oryzias_latipes_hsok
ENSAMXG00000038564	si:ch211-153b23.3	100	71.186	ENSOMEG00000007661	si:ch211-153b23.3	100	70.508	Oryzias_melastigma
ENSAMXG00000038564	si:ch211-153b23.3	99	51.505	ENSPKIG00000021029	-	99	50.948	Paramormyrops_kingsleyae
ENSAMXG00000038564	si:ch211-153b23.3	97	74.558	ENSPKIG00000022450	si:ch211-153b23.3	100	74.323	Paramormyrops_kingsleyae
ENSAMXG00000038564	si:ch211-153b23.3	79	75.633	ENSPMGG00000001311	si:ch211-153b23.3	93	75.633	Periophthalmus_magnuspinnatus
ENSAMXG00000038564	si:ch211-153b23.3	99	71.251	ENSPFOG00000012289	si:ch211-153b23.3	99	71.029	Poecilia_formosa
ENSAMXG00000038564	si:ch211-153b23.3	74	30.712	ENSPFOG00000012164	si:ch211-153b23.4	91	30.769	Poecilia_formosa
ENSAMXG00000038564	si:ch211-153b23.3	74	31.674	ENSPLAG00000016295	si:ch211-153b23.4	80	31.674	Poecilia_latipinna
ENSAMXG00000038564	si:ch211-153b23.3	99	71.722	ENSPLAG00000016320	si:ch211-153b23.3	100	71.493	Poecilia_latipinna
ENSAMXG00000038564	si:ch211-153b23.3	99	71.591	ENSPMEG00000008884	si:ch211-153b23.3	99	71.364	Poecilia_mexicana
ENSAMXG00000038564	si:ch211-153b23.3	99	70.615	ENSPNYG00000000251	si:ch211-153b23.3	100	70.615	Pundamilia_nyererei
ENSAMXG00000038564	si:ch211-153b23.3	99	84.914	ENSPNAG00000019592	si:ch211-153b23.3	99	84.914	Pygocentrus_nattereri
ENSAMXG00000038564	si:ch211-153b23.3	54	34.029	ENSSFOG00015003920	-	53	34.029	Scleropages_formosus
ENSAMXG00000038564	si:ch211-153b23.3	69	52.419	ENSSFOG00015009030	-	97	52.419	Scleropages_formosus
ENSAMXG00000038564	si:ch211-153b23.3	99	74.943	ENSSFOG00015010910	si:ch211-153b23.3	99	74.603	Scleropages_formosus
ENSAMXG00000038564	si:ch211-153b23.3	99	72.437	ENSSMAG00000005446	si:ch211-153b23.3	100	72.437	Scophthalmus_maximus
ENSAMXG00000038564	si:ch211-153b23.3	72	30.186	ENSSMAG00000010067	si:ch211-153b23.4	73	30.186	Scophthalmus_maximus
ENSAMXG00000038564	si:ch211-153b23.3	99	72.676	ENSSLDG00000008629	si:ch211-153b23.3	100	72.676	Seriola_lalandi_dorsalis
ENSAMXG00000038564	si:ch211-153b23.3	99	69.319	ENSTRUG00000020530	si:ch211-153b23.3	100	69.319	Takifugu_rubripes
ENSAMXG00000038564	si:ch211-153b23.3	74	30.000	ENSTRUG00000003247	si:ch211-153b23.4	80	30.000	Takifugu_rubripes
ENSAMXG00000038564	si:ch211-153b23.3	99	64.351	ENSTNIG00000008962	si:ch211-153b23.3	99	63.740	Tetraodon_nigroviridis
ENSAMXG00000038564	si:ch211-153b23.3	99	72.178	ENSXMAG00000029318	si:ch211-153b23.3	99	72.014	Xiphophorus_maculatus
ENSAMXG00000038564	si:ch211-153b23.3	74	31.634	ENSXMAG00000021388	si:ch211-153b23.4	77	31.634	Xiphophorus_maculatus