EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000038794 (Gene tree)
Gene ID: 107197606
Gene Symbol: rpl29
Alias: zgc:92868
Full Name: ribosomal protein L29
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 5489 bases
Position: chr22:21998861-22004349
Accession: 107197606
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000028176	Ribosomal_L29e	PF01779.17	2.8e-26	1	1
ENSAMXP00000035837	Ribosomal_L29e	PF01779.17	2.8e-26	1	1
ENSAMXP00000025409	Ribosomal_L29e	PF01779.17	3.2e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000029897	-	3310	-	ENSAMXP00000028176	64 (aa)	-	UPI0003CD5D5D
ENSAMXT00000051013	-	2824	XM_015605589	ENSAMXP00000035837	64 (aa)	XP_015461075	UPI0003CD5D5D
ENSAMXT00000025428	-	204	-	ENSAMXP00000025409	67 (aa)	-	W5LRA4

Gene Model

Click here to download ENSAMXG00000038794's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000038794's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000038794	rpl29	85	92.982	ENSG00000162244	RPL29	97	88.889	Homo_sapiens
ENSAMXG00000038794	rpl29	84	87.037	ENSAPOG00000002586	rpl29	92	83.051	Acanthochromis_polyacanthus
ENSAMXG00000038794	rpl29	84	96.296	ENSACIG00000018340	rpl29	100	85.938	Amphilophus_citrinellus
ENSAMXG00000038794	rpl29	84	90.741	ENSAOCG00000016652	rpl29	92	86.441	Amphiprion_ocellaris
ENSAMXG00000038794	rpl29	84	90.741	ENSAPEG00000005754	rpl29	92	86.441	Amphiprion_percula
ENSAMXG00000038794	rpl29	85	92.982	ENSACAG00000006888	RPL29	88	92.982	Anolis_carolinensis
ENSAMXG00000038794	rpl29	85	92.982	ENSANAG00000024147	-	77	78.261	Aotus_nancymaae
ENSAMXG00000038794	rpl29	92	89.831	ENSACLG00000017820	rpl29	92	89.831	Astatotilapia_calliptera
ENSAMXG00000038794	rpl29	84	61.111	WBGene00004443	rpl-29	87	61.111	Caenorhabditis_elegans
ENSAMXG00000038794	rpl29	85	92.982	ENSCJAG00000042339	-	77	78.261	Callithrix_jacchus
ENSAMXG00000038794	rpl29	85	92.982	ENSCCAG00000027980	-	77	78.261	Cebus_capucinus
ENSAMXG00000038794	rpl29	72	85.106	ENSCSAG00000017871	-	50	87.500	Chlorocebus_sabaeus
ENSAMXG00000038794	rpl29	54	91.667	ENSCPBG00000016679	-	52	82.500	Chrysemys_picta_bellii
ENSAMXG00000038794	rpl29	81	78.846	ENSCING00000018496	-	90	78.846	Ciona_intestinalis
ENSAMXG00000038794	rpl29	95	75.410	ENSCSAVG00000005231	-	100	75.410	Ciona_savignyi
ENSAMXG00000038794	rpl29	89	92.982	ENSCGRG00001016452	-	96	84.615	Cricetulus_griseus_chok1gshd
ENSAMXG00000038794	rpl29	78	92.000	ENSCSEG00000010267	rpl29	94	83.871	Cynoglossus_semilaevis
ENSAMXG00000038794	rpl29	78	96.000	ENSCVAG00000023098	rpl29	100	87.500	Cyprinodon_variegatus
ENSAMXG00000038794	rpl29	100	92.188	ENSDARG00000077717	rpl29	100	92.188	Danio_rerio
ENSAMXG00000038794	rpl29	94	53.968	FBgn0016726	RpL29	66	64.000	Drosophila_melanogaster
ENSAMXG00000038794	rpl29	67	86.047	ENSEASG00005005507	-	66	86.047	Equus_asinus_asinus
ENSAMXG00000038794	rpl29	88	85.714	ENSELUG00000015592	RL29	80	85.714	Esox_lucius
ENSAMXG00000038794	rpl29	67	67.442	ENSFCAG00000035470	-	58	65.909	Felis_catus
ENSAMXG00000038794	rpl29	98	61.905	ENSFCAG00000043006	-	78	61.905	Felis_catus
ENSAMXG00000038794	rpl29	85	94.737	ENSFALG00000008925	RPL29	91	88.710	Ficedula_albicollis
ENSAMXG00000038794	rpl29	100	85.938	ENSFHEG00000015425	rpl29	100	85.938	Fundulus_heteroclitus
ENSAMXG00000038794	rpl29	84	87.037	ENSGMOG00000003626	rpl29	88	76.119	Gadus_morhua
ENSAMXG00000038794	rpl29	85	94.737	ENSGALG00000026978	RPL29	87	88.710	Gallus_gallus
ENSAMXG00000038794	rpl29	100	87.500	ENSGAFG00000012868	rpl29	100	87.500	Gambusia_affinis
ENSAMXG00000038794	rpl29	92	88.136	ENSGACG00000007041	rpl29	84	81.538	Gasterosteus_aculeatus
ENSAMXG00000038794	rpl29	72	75.000	ENSGAGG00000024203	-	89	75.000	Gopherus_agassizii
ENSAMXG00000038794	rpl29	85	92.982	ENSGGOG00000024691	RPL29	60	91.667	Gorilla_gorilla
ENSAMXG00000038794	rpl29	97	88.710	ENSHBUG00000010519	rpl29	92	89.831	Haplochromis_burtoni
ENSAMXG00000038794	rpl29	78	96.000	ENSHCOG00000000478	rpl29	82	87.692	Hippocampus_comes
ENSAMXG00000038794	rpl29	100	90.625	ENSIPUG00000001196	rpl29	100	90.625	Ictalurus_punctatus
ENSAMXG00000038794	rpl29	84	96.296	ENSKMAG00000011291	rpl29	100	87.500	Kryptolebias_marmoratus
ENSAMXG00000038794	rpl29	84	88.889	ENSLBEG00000016213	rpl29	94	82.812	Labrus_bergylta
ENSAMXG00000038794	rpl29	88	89.286	ENSLACG00000018031	-	82	89.286	Latimeria_chalumnae
ENSAMXG00000038794	rpl29	88	89.286	ENSLACG00000018622	rpl29	88	89.286	Latimeria_chalumnae
ENSAMXG00000038794	rpl29	72	93.478	ENSLOCG00000013798	rpl29	100	84.615	Lepisosteus_oculatus
ENSAMXG00000038794	rpl29	84	92.593	ENSMAMG00000014274	rpl29	62	88.136	Mastacembelus_armatus
ENSAMXG00000038794	rpl29	92	89.831	ENSMZEG00005013519	rpl29	92	89.831	Maylandia_zebra
ENSAMXG00000038794	rpl29	85	94.737	ENSMGAG00000001213	RPL29	87	88.710	Meleagris_gallopavo
ENSAMXG00000038794	rpl29	77	81.633	ENSMICG00000049466	-	74	81.633	Microcebus_murinus
ENSAMXG00000038794	rpl29	92	88.136	ENSMMOG00000010430	rpl29	92	88.136	Mola_mola
ENSAMXG00000038794	rpl29	84	92.593	ENSMALG00000009023	rpl29	82	82.812	Monopterus_albus
ENSAMXG00000038794	rpl29	72	95.652	ENSMUSG00000048758	Rpl29	99	80.597	Mus_musculus
ENSAMXG00000038794	rpl29	92	89.831	ENSNBRG00000022109	rpl29	92	89.831	Neolamprologus_brichardi
ENSAMXG00000038794	rpl29	92	89.831	ENSONIG00000014377	rpl29	94	89.831	Oreochromis_niloticus
ENSAMXG00000038794	rpl29	97	87.097	ENSORLG00000023610	rpl29	64	87.097	Oryzias_latipes
ENSAMXG00000038794	rpl29	97	87.097	ENSORLG00020018665	rpl29	64	87.097	Oryzias_latipes_hni
ENSAMXG00000038794	rpl29	97	87.097	ENSORLG00015014455	rpl29	64	87.097	Oryzias_latipes_hsok
ENSAMXG00000038794	rpl29	92	89.831	ENSOMEG00000019919	rpl29	92	89.831	Oryzias_melastigma
ENSAMXG00000038794	rpl29	56	91.667	ENSPPAG00000037142	-	61	91.667	Pan_paniscus
ENSAMXG00000038794	rpl29	98	63.492	ENSPPRG00000011689	-	88	63.492	Panthera_pardus
ENSAMXG00000038794	rpl29	98	61.905	ENSPTIG00000011913	-	77	61.905	Panthera_tigris_altaica
ENSAMXG00000038794	rpl29	85	92.982	ENSPTRG00000043237	RPL29	61	91.667	Pan_troglodytes
ENSAMXG00000038794	rpl29	86	98.182	ENSPKIG00000025048	rpl29	83	98.182	Paramormyrops_kingsleyae
ENSAMXG00000038794	rpl29	85	92.982	ENSPSIG00000014699	RPL29	90	92.982	Pelodiscus_sinensis
ENSAMXG00000038794	rpl29	98	82.540	ENSPMGG00000005361	rpl29	99	77.612	Periophthalmus_magnuspinnatus
ENSAMXG00000038794	rpl29	92	91.525	ENSPFOG00000011385	rpl29	97	91.525	Poecilia_formosa
ENSAMXG00000038794	rpl29	78	94.000	ENSPLAG00000012042	rpl29	100	85.938	Poecilia_latipinna
ENSAMXG00000038794	rpl29	78	96.000	ENSPMEG00000018297	rpl29	100	87.500	Poecilia_mexicana
ENSAMXG00000038794	rpl29	78	96.000	ENSPREG00000007066	rpl29	100	87.500	Poecilia_reticulata
ENSAMXG00000038794	rpl29	92	89.831	ENSPNYG00000019481	rpl29	92	89.831	Pundamilia_nyererei
ENSAMXG00000038794	rpl29	100	95.312	ENSPNAG00000007550	rpl29	100	95.312	Pygocentrus_nattereri
ENSAMXG00000038794	rpl29	81	86.538	ENSRNOG00000025794	AABR07021239.1	69	86.538	Rattus_norvegicus
ENSAMXG00000038794	rpl29	72	76.087	YFR032C-A	RPL29	78	76.087	Saccharomyces_cerevisiae
ENSAMXG00000038794	rpl29	84	90.741	ENSSMAG00000013571	rpl29	100	82.812	Scophthalmus_maximus
ENSAMXG00000038794	rpl29	78	92.000	ENSSDUG00000016140	rpl29	92	86.441	Seriola_dumerili
ENSAMXG00000038794	rpl29	72	63.830	ENSSDUG00000020458	-	76	63.830	Seriola_dumerili
ENSAMXG00000038794	rpl29	78	92.000	ENSSLDG00000003932	rpl29	92	86.441	Seriola_lalandi_dorsalis
ENSAMXG00000038794	rpl29	85	94.737	ENSSPUG00000003760	RPL29	90	94.737	Sphenodon_punctatus
ENSAMXG00000038794	rpl29	84	85.185	ENSSPAG00000020292	rpl29	88	83.929	Stegastes_partitus
ENSAMXG00000038794	rpl29	59	89.474	ENSSSCG00000037047	-	100	87.755	Sus_scrofa
ENSAMXG00000038794	rpl29	88	64.286	ENSSSCG00000031314	-	89	64.286	Sus_scrofa
ENSAMXG00000038794	rpl29	85	92.982	ENSTGUG00000006027	RPL29	98	87.097	Taeniopygia_guttata
ENSAMXG00000038794	rpl29	97	80.645	ENSTRUG00000022273	rpl29	98	78.125	Takifugu_rubripes
ENSAMXG00000038794	rpl29	83	92.453	ENSTNIG00000014816	rpl29	96	80.000	Tetraodon_nigroviridis
ENSAMXG00000038794	rpl29	93	74.194	ENSTBEG00000000807	-	76	74.194	Tupaia_belangeri
ENSAMXG00000038794	rpl29	83	82.456	ENSUAMG00000002601	-	100	82.456	Ursus_americanus
ENSAMXG00000038794	rpl29	72	89.130	ENSVVUG00000012400	-	100	87.719	Vulpes_vulpes
ENSAMXG00000038794	rpl29	72	95.652	ENSXETG00000010811	rpl29	76	91.228	Xenopus_tropicalis
ENSAMXG00000038794	rpl29	100	87.500	ENSXCOG00000013543	rpl29	100	87.500	Xiphophorus_couchianus
ENSAMXG00000038794	rpl29	100	87.500	ENSXMAG00000020948	rpl29	100	87.500	Xiphophorus_maculatus