EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000039486 (Gene tree)
Gene ID: 103045400
Gene Symbol: zgc:171927
Alias: -
Full Name: ras-related protein ORAB-1-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 3763 bases
Position: chr1:14875714-14879476
Accession: 103045400
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000035163	MMR_HSR1	PF01926.23	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000043956	-	633	XM_015602301	ENSAMXP00000035163	210 (aa)	XP_015457787	UPI000BBDC81D

Gene Model

Click here to download ENSAMXG00000039486's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000039486's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000039486	zgc:171927	76	30.303	ENSAMXG00000041488	dnajc27	60	30.303
ENSAMXG00000039486	zgc:171927	86	34.254	ENSAMXG00000029130	-	94	34.254
ENSAMXG00000039486	zgc:171927	94	81.218	ENSAMXG00000032564	rab1ab	98	81.218
ENSAMXG00000039486	zgc:171927	78	38.788	ENSAMXG00000010334	rras	80	38.788
ENSAMXG00000039486	zgc:171927	83	36.413	ENSAMXG00000033390	rap1aa	94	36.413
ENSAMXG00000039486	zgc:171927	83	41.146	ENSAMXG00000040286	rab33ba	81	40.722
ENSAMXG00000039486	zgc:171927	79	38.182	ENSAMXG00000033216	rab41	84	38.182
ENSAMXG00000039486	zgc:171927	81	34.302	ENSAMXG00000033764	si:ch73-116o1.2	91	32.000
ENSAMXG00000039486	zgc:171927	78	45.399	ENSAMXG00000036179	rab5aa	75	45.399
ENSAMXG00000039486	zgc:171927	84	48.889	ENSAMXG00000042073	rab18b	87	48.889
ENSAMXG00000039486	zgc:171927	73	38.710	ENSAMXG00000040611	rabl2	67	38.710
ENSAMXG00000039486	zgc:171927	67	30.496	ENSAMXG00000043381	zgc:110197	77	30.496
ENSAMXG00000039486	zgc:171927	99	44.811	ENSAMXG00000042655	rab11bb	96	44.811
ENSAMXG00000039486	zgc:171927	99	44.393	ENSAMXG00000037623	-	97	44.393
ENSAMXG00000039486	zgc:171927	70	40.397	ENSAMXG00000006018	rab34b	63	41.358
ENSAMXG00000039486	zgc:171927	57	36.290	ENSAMXG00000034227	rab32b	59	36.290
ENSAMXG00000039486	zgc:171927	77	39.157	ENSAMXG00000026476	rab9b	74	39.157
ENSAMXG00000039486	zgc:171927	76	50.625	ENSAMXG00000042419	rab3c	74	50.625
ENSAMXG00000039486	zgc:171927	99	36.620	ENSAMXG00000032729	rab42a	100	36.620
ENSAMXG00000039486	zgc:171927	78	35.976	ENSAMXG00000017217	kras	87	35.758
ENSAMXG00000039486	zgc:171927	92	80.928	ENSAMXG00000034850	-	96	80.928
ENSAMXG00000039486	zgc:171927	78	36.196	ENSAMXG00000014960	rab23	81	36.905
ENSAMXG00000039486	zgc:171927	78	44.643	ENSAMXG00000040460	zgc:101559	69	44.643
ENSAMXG00000039486	zgc:171927	92	45.178	ENSAMXG00000009640	rab14	89	45.178
ENSAMXG00000039486	zgc:171927	84	53.672	ENSAMXG00000030712	rab13	88	53.672
ENSAMXG00000039486	zgc:171927	75	41.615	ENSAMXG00000017266	rab36	61	41.615
ENSAMXG00000039486	zgc:171927	78	35.882	ENSAMXG00000036330	RAB38	79	35.882
ENSAMXG00000039486	zgc:171927	79	60.843	ENSAMXG00000038243	si:dkey-16l2.16	90	69.565
ENSAMXG00000039486	zgc:171927	96	40.887	ENSAMXG00000003717	rab39bb	90	40.887
ENSAMXG00000039486	zgc:171927	79	49.398	ENSAMXG00000043951	rab15	79	49.398
ENSAMXG00000039486	zgc:171927	86	36.757	ENSAMXG00000032027	rab7a	89	36.757
ENSAMXG00000039486	zgc:171927	78	37.423	ENSAMXG00000004630	rab6ba	86	37.423
ENSAMXG00000039486	zgc:171927	93	78.462	ENSAMXG00000003547	rab1ba	87	78.462
ENSAMXG00000039486	zgc:171927	89	35.233	ENSAMXG00000002254	-	93	35.233
ENSAMXG00000039486	zgc:171927	79	34.731	ENSAMXG00000010919	mras	80	34.731
ENSAMXG00000039486	zgc:171927	98	41.262	ENSAMXG00000040879	rab25a	95	41.262
ENSAMXG00000039486	zgc:171927	57	30.000	ENSAMXG00000030683	arl8ba	62	30.000
ENSAMXG00000039486	zgc:171927	74	40.881	ENSAMXG00000025889	RAB9A	79	40.881
ENSAMXG00000039486	zgc:171927	81	47.953	ENSAMXG00000039737	RAB19	78	47.953
ENSAMXG00000039486	zgc:171927	80	52.976	ENSAMXG00000003155	rab11a	78	52.976
ENSAMXG00000039486	zgc:171927	81	51.163	ENSAMXG00000004882	rab12	72	50.282
ENSAMXG00000039486	zgc:171927	83	35.227	ENSAMXG00000035885	hrasa	92	35.227
ENSAMXG00000039486	zgc:171927	86	31.250	ENSAMXG00000033069	si:cabz01085950.1	93	31.250
ENSAMXG00000039486	zgc:171927	79	38.462	ENSAMXG00000031957	zgc:100918	82	38.462
ENSAMXG00000039486	zgc:171927	56	30.252	ENSAMXG00000024926	arl4cb	61	30.252
ENSAMXG00000039486	zgc:171927	83	31.088	ENSAMXG00000035770	rasl11a	76	31.088
ENSAMXG00000039486	zgc:171927	93	43.367	ENSAMXG00000033470	RAB15	99	42.254
ENSAMXG00000039486	zgc:171927	96	40.887	ENSAMXG00000041657	rab39ba	90	40.887
ENSAMXG00000039486	zgc:171927	92	35.385	ENSAMXG00000032547	rab6a	92	35.385
ENSAMXG00000039486	zgc:171927	96	37.559	ENSAMXG00000043003	rab34a	79	37.559
ENSAMXG00000039486	zgc:171927	75	38.788	ENSAMXG00000032663	si:dkey-13a21.4	76	38.788
ENSAMXG00000039486	zgc:171927	56	31.405	ENSAMXG00000011499	arl2	61	31.405
ENSAMXG00000039486	zgc:171927	79	41.818	ENSAMXG00000013054	rab22a	82	41.818
ENSAMXG00000039486	zgc:171927	78	44.785	ENSAMXG00000035919	rab5ab	75	44.785
ENSAMXG00000039486	zgc:171927	63	35.075	ENSAMXG00000003504	rab20	52	35.075
ENSAMXG00000039486	zgc:171927	54	31.304	ENSAMXG00000006638	arl4aa	57	31.304
ENSAMXG00000039486	zgc:171927	95	44.335	ENSAMXG00000040126	-	73	44.335
ENSAMXG00000039486	zgc:171927	98	41.748	ENSAMXG00000029712	rab25b	96	41.748
ENSAMXG00000039486	zgc:171927	77	34.969	ENSAMXG00000012327	nras	90	34.969
ENSAMXG00000039486	zgc:171927	99	47.343	ENSAMXG00000009935	rab30	79	47.343
ENSAMXG00000039486	zgc:171927	77	64.815	ENSAMXG00000039865	rab35b	95	58.854
ENSAMXG00000039486	zgc:171927	78	45.399	ENSAMXG00000037267	-	77	45.399
ENSAMXG00000039486	zgc:171927	67	30.496	ENSAMXG00000037720	arl3	72	30.496
ENSAMXG00000039486	zgc:171927	56	30.081	ENSAMXG00000037485	arf2b	65	30.081
ENSAMXG00000039486	zgc:171927	56	30.081	ENSAMXG00000016434	arf3a	50	30.081
ENSAMXG00000039486	zgc:171927	78	44.785	ENSAMXG00000043717	rab5c	74	44.785
ENSAMXG00000039486	zgc:171927	74	38.365	ENSAMXG00000026059	RAB9A	79	38.365
ENSAMXG00000039486	zgc:171927	78	35.152	ENSAMXG00000033907	hrasb	86	35.152
ENSAMXG00000039486	zgc:171927	56	32.203	ENSAMXG00000039062	arl8a	61	32.203
ENSAMXG00000039486	zgc:171927	74	50.323	ENSAMXG00000024632	rab11al	75	50.323
ENSAMXG00000039486	zgc:171927	82	42.541	ENSAMXG00000037428	-	85	42.541
ENSAMXG00000039486	zgc:171927	88	49.468	ENSAMXG00000036772	rab2a	99	47.887
ENSAMXG00000039486	zgc:171927	77	64.815	ENSAMXG00000040604	-	80	64.815

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000039486	zgc:171927	100	80.465	ENSAPOG00000004980	-	100	80.465	Acanthochromis_polyacanthus
ENSAMXG00000039486	zgc:171927	100	80.465	ENSACIG00000009006	zgc:171927	100	80.465	Amphilophus_citrinellus
ENSAMXG00000039486	zgc:171927	100	79.070	ENSAOCG00000024149	-	100	79.070	Amphiprion_ocellaris
ENSAMXG00000039486	zgc:171927	72	83.871	ENSAOCG00000013808	-	93	93.388	Amphiprion_ocellaris
ENSAMXG00000039486	zgc:171927	100	79.535	ENSAPEG00000022171	zgc:171927	99	79.535	Amphiprion_percula
ENSAMXG00000039486	zgc:171927	100	79.535	ENSATEG00000003430	zgc:171927	100	79.535	Anabas_testudineus
ENSAMXG00000039486	zgc:171927	100	79.812	ENSACLG00000013734	-	100	79.812	Astatotilapia_calliptera
ENSAMXG00000039486	zgc:171927	100	78.605	ENSCSEG00000014416	zgc:171927	100	78.605	Cynoglossus_semilaevis
ENSAMXG00000039486	zgc:171927	100	79.535	ENSCVAG00000009222	zgc:171927	100	79.535	Cyprinodon_variegatus
ENSAMXG00000039486	zgc:171927	100	89.048	ENSDARG00000033056	zgc:171927	100	89.048	Danio_rerio
ENSAMXG00000039486	zgc:171927	100	83.886	ENSELUG00000011680	zgc:171927	100	83.886	Esox_lucius
ENSAMXG00000039486	zgc:171927	100	78.605	ENSFHEG00000022176	zgc:171927	100	78.605	Fundulus_heteroclitus
ENSAMXG00000039486	zgc:171927	98	73.077	ENSGMOG00000004979	-	97	73.077	Gadus_morhua
ENSAMXG00000039486	zgc:171927	98	78.095	ENSGAFG00000015702	zgc:171927	84	78.095	Gambusia_affinis
ENSAMXG00000039486	zgc:171927	100	78.605	ENSGACG00000013401	zgc:171927	99	78.605	Gasterosteus_aculeatus
ENSAMXG00000039486	zgc:171927	100	79.812	ENSHBUG00000002397	-	100	79.812	Haplochromis_burtoni
ENSAMXG00000039486	zgc:171927	100	78.605	ENSKMAG00000009856	zgc:171927	100	78.605	Kryptolebias_marmoratus
ENSAMXG00000039486	zgc:171927	98	78.095	ENSLBEG00000027226	-	89	77.990	Labrus_bergylta
ENSAMXG00000039486	zgc:171927	100	78.605	ENSLBEG00000005791	-	100	78.605	Labrus_bergylta
ENSAMXG00000039486	zgc:171927	98	76.098	ENSLOCG00000014692	zgc:171927	96	76.098	Lepisosteus_oculatus
ENSAMXG00000039486	zgc:171927	100	79.070	ENSMAMG00000020135	zgc:171927	100	79.070	Mastacembelus_armatus
ENSAMXG00000039486	zgc:171927	100	79.812	ENSMZEG00005024685	-	100	79.812	Maylandia_zebra
ENSAMXG00000039486	zgc:171927	100	75.814	ENSMMOG00000009833	-	100	75.814	Mola_mola
ENSAMXG00000039486	zgc:171927	100	79.343	ENSMALG00000021129	zgc:171927	100	79.343	Monopterus_albus
ENSAMXG00000039486	zgc:171927	100	79.343	ENSNBRG00000006202	zgc:171927	100	79.343	Neolamprologus_brichardi
ENSAMXG00000039486	zgc:171927	100	78.505	ENSORLG00000000602	zgc:171927	100	78.505	Oryzias_latipes
ENSAMXG00000039486	zgc:171927	100	78.505	ENSORLG00020021071	zgc:171927	100	78.505	Oryzias_latipes_hni
ENSAMXG00000039486	zgc:171927	100	77.570	ENSORLG00015010098	zgc:171927	100	77.570	Oryzias_latipes_hsok
ENSAMXG00000039486	zgc:171927	100	79.070	ENSOMEG00000020594	zgc:171927	100	79.070	Oryzias_melastigma
ENSAMXG00000039486	zgc:171927	100	78.605	ENSPFOG00000013810	zgc:171927	99	78.605	Poecilia_formosa
ENSAMXG00000039486	zgc:171927	100	78.140	ENSPLAG00000005869	zgc:171927	100	78.140	Poecilia_latipinna
ENSAMXG00000039486	zgc:171927	100	78.605	ENSPMEG00000022350	zgc:171927	100	78.605	Poecilia_mexicana
ENSAMXG00000039486	zgc:171927	100	78.605	ENSPREG00000017517	zgc:171927	100	78.605	Poecilia_reticulata
ENSAMXG00000039486	zgc:171927	100	79.812	ENSPNYG00000007520	-	100	79.812	Pundamilia_nyererei
ENSAMXG00000039486	zgc:171927	100	97.143	ENSPNAG00000029574	zgc:171927	100	97.143	Pygocentrus_nattereri
ENSAMXG00000039486	zgc:171927	100	86.190	ENSSFOG00015005464	zgc:171927	99	86.190	Scleropages_formosus
ENSAMXG00000039486	zgc:171927	100	77.209	ENSSMAG00000004416	-	100	77.209	Scophthalmus_maximus
ENSAMXG00000039486	zgc:171927	100	79.535	ENSSDUG00000004445	zgc:171927	100	79.535	Seriola_dumerili
ENSAMXG00000039486	zgc:171927	100	79.535	ENSSLDG00000018024	zgc:171927	100	79.535	Seriola_lalandi_dorsalis
ENSAMXG00000039486	zgc:171927	100	80.000	ENSSPAG00000013533	zgc:171927	100	80.000	Stegastes_partitus
ENSAMXG00000039486	zgc:171927	100	78.605	ENSXCOG00000010695	zgc:171927	100	78.605	Xiphophorus_couchianus
ENSAMXG00000039486	zgc:171927	100	78.140	ENSXMAG00000004683	zgc:171927	100	78.140	Xiphophorus_maculatus