EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000039541 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 3432 bases
Position: chr20:11908834-11912265
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000041890	RVT_1	PF00078.27	9.6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000029797	-	3432	-	ENSAMXP00000041890	1143 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000039541's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000039541's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000039541	-	88	41.865	ENSAMXG00000030324	-	94	41.865
ENSAMXG00000039541	-	99	43.223	ENSAMXG00000034228	-	98	43.223
ENSAMXG00000039541	-	98	44.493	ENSAMXG00000035203	-	99	44.464

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000039541	-	65	39.706	ENSACLG00000020851	-	99	39.706	Astatotilapia_calliptera
ENSAMXG00000039541	-	96	38.475	ENSMZEG00005018493	-	98	38.392	Maylandia_zebra
ENSAMXG00000039541	-	67	46.990	ENSORLG00015002388	-	96	46.990	Oryzias_latipes_hsok
ENSAMXG00000039541	-	79	47.052	ENSOMEG00000023989	-	99	46.943	Oryzias_melastigma
ENSAMXG00000039541	-	82	44.030	ENSSFOG00015000041	-	97	44.030	Scleropages_formosus
ENSAMXG00000039541	-	85	42.655	ENSSFOG00015009840	-	94	42.655	Scleropages_formosus
ENSAMXG00000039541	-	79	44.371	ENSSFOG00015018491	-	99	44.371	Scleropages_formosus
ENSAMXG00000039541	-	91	63.532	ENSSLDG00000012549	-	99	63.724	Seriola_lalandi_dorsalis
ENSAMXG00000039541	-	96	39.257	ENSTNIG00000000569	-	98	39.166	Tetraodon_nigroviridis