EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000039600 (Gene tree)
Gene ID: 103028167
Gene Symbol: gfi1ab
Alias: gfi1|gfi1.2|gfi1b
Full Name: zinc finger protein Gfi-1-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 7176 bases
Position: chrAPWO02000181.1:1326613-1333788
Accession: 103028167
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000045219	zf-C2H2	PF00096.26	9.6e-30	1	6
ENSAMXP00000045219	zf-C2H2	PF00096.26	9.6e-30	2	6
ENSAMXP00000045219	zf-C2H2	PF00096.26	9.6e-30	3	6
ENSAMXP00000045219	zf-C2H2	PF00096.26	9.6e-30	4	6
ENSAMXP00000045219	zf-C2H2	PF00096.26	9.6e-30	5	6
ENSAMXP00000045219	zf-C2H2	PF00096.26	9.6e-30	6	6
ENSAMXP00000045219	zf-met	PF12874.7	3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000051167	-	3149	XM_007233613	ENSAMXP00000045219	379 (aa)	XP_007233675	UPI000BBD9F51

Gene Model

Click here to download ENSAMXG00000039600's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000039600's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000039600	gfi1ab	53	39.695	ENSAMXG00000035127	-	92	43.662
ENSAMXG00000039600	gfi1ab	51	42.262	ENSAMXG00000026144	-	91	42.262
ENSAMXG00000039600	gfi1ab	50	42.169	ENSAMXG00000040677	-	84	42.169
ENSAMXG00000039600	gfi1ab	59	42.604	ENSAMXG00000014745	-	81	41.830
ENSAMXG00000039600	gfi1ab	50	44.578	ENSAMXG00000025452	-	96	44.578
ENSAMXG00000039600	gfi1ab	51	50.000	ENSAMXG00000009558	-	95	50.000
ENSAMXG00000039600	gfi1ab	56	38.971	ENSAMXG00000035090	-	53	38.971
ENSAMXG00000039600	gfi1ab	54	42.969	ENSAMXG00000034333	-	92	39.634
ENSAMXG00000039600	gfi1ab	50	43.452	ENSAMXG00000031496	-	92	43.452
ENSAMXG00000039600	gfi1ab	100	53.421	ENSAMXG00000006669	GFI1	100	53.421
ENSAMXG00000039600	gfi1ab	51	47.826	ENSAMXG00000040630	-	99	47.826
ENSAMXG00000039600	gfi1ab	51	40.171	ENSAMXG00000035525	znf646	61	40.171
ENSAMXG00000039600	gfi1ab	55	36.691	ENSAMXG00000033252	-	94	41.176
ENSAMXG00000039600	gfi1ab	51	41.718	ENSAMXG00000035920	-	94	41.718
ENSAMXG00000039600	gfi1ab	55	45.000	ENSAMXG00000030659	-	85	45.000
ENSAMXG00000039600	gfi1ab	63	38.462	ENSAMXG00000008771	PRDM15	59	38.462
ENSAMXG00000039600	gfi1ab	65	44.030	ENSAMXG00000039770	-	86	44.030
ENSAMXG00000039600	gfi1ab	60	44.048	ENSAMXG00000039016	-	87	44.048
ENSAMXG00000039600	gfi1ab	51	41.558	ENSAMXG00000009563	-	95	41.558
ENSAMXG00000039600	gfi1ab	100	49.490	ENSAMXG00000037544	GFI1B	100	49.490
ENSAMXG00000039600	gfi1ab	100	39.474	ENSAMXG00000015228	-	95	39.474
ENSAMXG00000039600	gfi1ab	73	34.810	ENSAMXG00000007441	-	95	34.810
ENSAMXG00000039600	gfi1ab	50	42.771	ENSAMXG00000036849	-	76	42.771
ENSAMXG00000039600	gfi1ab	51	43.243	ENSAMXG00000042167	-	94	43.243
ENSAMXG00000039600	gfi1ab	74	45.205	ENSAMXG00000037143	-	94	45.205

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000039600	gfi1ab	100	59.485	ENSG00000162676	GFI1	100	59.953	Homo_sapiens
ENSAMXG00000039600	gfi1ab	100	66.667	ENSAPOG00000015189	gfi1ab	100	66.921	Acanthochromis_polyacanthus
ENSAMXG00000039600	gfi1ab	50	88.421	ENSAMEG00000013858	-	99	88.421	Ailuropoda_melanoleuca
ENSAMXG00000039600	gfi1ab	100	64.394	ENSACIG00000016354	gfi1ab	100	64.394	Amphilophus_citrinellus
ENSAMXG00000039600	gfi1ab	100	43.810	ENSAOCG00000008339	gfi1ab	100	45.297	Amphiprion_ocellaris
ENSAMXG00000039600	gfi1ab	100	66.921	ENSAPEG00000023870	gfi1ab	100	67.176	Amphiprion_percula
ENSAMXG00000039600	gfi1ab	100	64.615	ENSATEG00000009167	gfi1ab	89	64.615	Anabas_testudineus
ENSAMXG00000039600	gfi1ab	84	64.307	ENSAPLG00000015700	GFI1	97	64.307	Anas_platyrhynchos
ENSAMXG00000039600	gfi1ab	100	60.287	ENSACAG00000004498	GFI1	100	61.501	Anolis_carolinensis
ENSAMXG00000039600	gfi1ab	100	59.719	ENSANAG00000019656	GFI1	100	60.187	Aotus_nancymaae
ENSAMXG00000039600	gfi1ab	100	65.743	ENSACLG00000026458	gfi1ab	93	65.743	Astatotilapia_calliptera
ENSAMXG00000039600	gfi1ab	100	60.706	ENSBTAG00000016723	GFI1	100	60.941	Bos_taurus
ENSAMXG00000039600	gfi1ab	100	57.991	ENSCJAG00000017609	GFI1	100	60.187	Callithrix_jacchus
ENSAMXG00000039600	gfi1ab	100	60.187	ENSCAFG00000020155	GFI1	100	60.656	Canis_familiaris
ENSAMXG00000039600	gfi1ab	100	60.187	ENSCAFG00020013371	GFI1	88	60.656	Canis_lupus_dingo
ENSAMXG00000039600	gfi1ab	100	60.706	ENSCHIG00000016135	GFI1	100	60.941	Capra_hircus
ENSAMXG00000039600	gfi1ab	100	60.000	ENSCPOG00000011727	GFI1	100	60.471	Cavia_porcellus
ENSAMXG00000039600	gfi1ab	100	59.719	ENSCCAG00000036072	GFI1	100	60.187	Cebus_capucinus
ENSAMXG00000039600	gfi1ab	100	59.251	ENSCATG00000037873	GFI1	100	59.719	Cercocebus_atys
ENSAMXG00000039600	gfi1ab	100	64.573	ENSCLAG00000005915	GFI1	100	59.318	Chinchilla_lanigera
ENSAMXG00000039600	gfi1ab	98	52.830	ENSCSAG00000001469	GFI1	100	53.369	Chlorocebus_sabaeus
ENSAMXG00000039600	gfi1ab	100	59.016	ENSCANG00000034077	GFI1	100	59.485	Colobus_angolensis_palliatus
ENSAMXG00000039600	gfi1ab	100	57.991	ENSCGRG00001015432	Gfi1	100	58.676	Cricetulus_griseus_chok1gshd
ENSAMXG00000039600	gfi1ab	100	60.599	ENSCSEG00000017729	GFI1	100	62.283	Cynoglossus_semilaevis
ENSAMXG00000039600	gfi1ab	100	56.618	ENSCVAG00000004930	GFI1	100	57.108	Cyprinodon_variegatus
ENSAMXG00000039600	gfi1ab	100	65.174	ENSCVAG00000011828	gfi1ab	100	65.174	Cyprinodon_variegatus
ENSAMXG00000039600	gfi1ab	100	72.319	ENSDARG00000044457	gfi1ab	100	72.319	Danio_rerio
ENSAMXG00000039600	gfi1ab	100	60.280	ENSDNOG00000000782	GFI1	97	61.502	Dasypus_novemcinctus
ENSAMXG00000039600	gfi1ab	100	61.124	ENSEASG00005015509	GFI1	86	61.593	Equus_asinus_asinus
ENSAMXG00000039600	gfi1ab	98	53.333	ENSECAG00000006647	GFI1	92	53.846	Equus_caballus
ENSAMXG00000039600	gfi1ab	100	59.441	ENSEEUG00000000198	GFI1	100	60.140	Erinaceus_europaeus
ENSAMXG00000039600	gfi1ab	100	69.630	ENSELUG00000003015	gfi1ab	99	69.630	Esox_lucius
ENSAMXG00000039600	gfi1ab	50	58.333	ENSELUG00000006948	-	57	58.333	Esox_lucius
ENSAMXG00000039600	gfi1ab	100	61.042	ENSELUG00000019033	GFI1	100	61.290	Esox_lucius
ENSAMXG00000039600	gfi1ab	100	60.890	ENSFCAG00000005914	GFI1	100	61.358	Felis_catus
ENSAMXG00000039600	gfi1ab	100	58.252	ENSFHEG00000000341	GFI1	100	58.495	Fundulus_heteroclitus
ENSAMXG00000039600	gfi1ab	100	65.586	ENSFHEG00000010997	gfi1ab	100	65.586	Fundulus_heteroclitus
ENSAMXG00000039600	gfi1ab	100	65.404	ENSGMOG00000007737	gfi1ab	100	65.404	Gadus_morhua
ENSAMXG00000039600	gfi1ab	100	63.235	ENSGALG00000043650	GFI1	100	63.725	Gallus_gallus
ENSAMXG00000039600	gfi1ab	100	57.457	ENSGAFG00000018063	GFI1	100	60.244	Gambusia_affinis
ENSAMXG00000039600	gfi1ab	100	64.516	ENSGAFG00000016637	gfi1ab	100	64.516	Gambusia_affinis
ENSAMXG00000039600	gfi1ab	100	65.570	ENSGACG00000004257	gfi1ab	97	65.823	Gasterosteus_aculeatus
ENSAMXG00000039600	gfi1ab	100	59.485	ENSGGOG00000005320	GFI1	100	59.953	Gorilla_gorilla
ENSAMXG00000039600	gfi1ab	100	65.316	ENSHBUG00000011969	gfi1ab	100	65.316	Haplochromis_burtoni
ENSAMXG00000039600	gfi1ab	100	60.706	ENSHGLG00000008020	GFI1	100	60.941	Heterocephalus_glaber_female
ENSAMXG00000039600	gfi1ab	100	60.706	ENSHGLG00100000610	GFI1	100	60.941	Heterocephalus_glaber_male
ENSAMXG00000039600	gfi1ab	100	57.317	ENSHCOG00000008590	gfi1ab	100	57.317	Hippocampus_comes
ENSAMXG00000039600	gfi1ab	100	60.256	ENSHCOG00000019555	GFI1	98	65.714	Hippocampus_comes
ENSAMXG00000039600	gfi1ab	100	72.796	ENSIPUG00000010071	gfi1ab	87	73.048	Ictalurus_punctatus
ENSAMXG00000039600	gfi1ab	100	59.500	ENSIPUG00000013414	GFI1	100	59.500	Ictalurus_punctatus
ENSAMXG00000039600	gfi1ab	100	58.469	ENSSTOG00000014583	GFI1	100	59.441	Ictidomys_tridecemlineatus
ENSAMXG00000039600	gfi1ab	100	64.573	ENSKMAG00000003810	gfi1ab	100	64.573	Kryptolebias_marmoratus
ENSAMXG00000039600	gfi1ab	100	65.664	ENSLBEG00000027776	gfi1ab	100	65.915	Labrus_bergylta
ENSAMXG00000039600	gfi1ab	99	47.632	ENSLACG00000017590	-	99	47.632	Latimeria_chalumnae
ENSAMXG00000039600	gfi1ab	100	64.020	ENSLACG00000013362	GFI1	98	64.020	Latimeria_chalumnae
ENSAMXG00000039600	gfi1ab	100	66.253	ENSLOCG00000004711	gfi1ab	100	66.501	Lepisosteus_oculatus
ENSAMXG00000039600	gfi1ab	100	61.165	ENSLAFG00000018346	GFI1	100	61.463	Loxodonta_africana
ENSAMXG00000039600	gfi1ab	100	59.251	ENSMFAG00000045801	GFI1	100	59.719	Macaca_fascicularis
ENSAMXG00000039600	gfi1ab	100	59.251	ENSMNEG00000036338	GFI1	100	59.719	Macaca_nemestrina
ENSAMXG00000039600	gfi1ab	100	59.251	ENSMLEG00000036181	GFI1	100	59.719	Mandrillus_leucophaeus
ENSAMXG00000039600	gfi1ab	100	67.000	ENSMAMG00000008125	gfi1ab	100	67.000	Mastacembelus_armatus
ENSAMXG00000039600	gfi1ab	100	65.491	ENSMZEG00005009895	gfi1ab	100	65.491	Maylandia_zebra
ENSAMXG00000039600	gfi1ab	87	64.857	ENSMGAG00000008187	GFI1	100	65.429	Meleagris_gallopavo
ENSAMXG00000039600	gfi1ab	100	59.070	ENSMICG00000047208	GFI1	100	59.535	Microcebus_murinus
ENSAMXG00000039600	gfi1ab	100	65.285	ENSMMOG00000005556	gfi1ab	100	65.285	Mola_mola
ENSAMXG00000039600	gfi1ab	100	59.080	ENSMODG00000011802	GFI1	100	59.540	Monodelphis_domestica
ENSAMXG00000039600	gfi1ab	100	63.750	ENSMALG00000014672	gfi1ab	100	63.750	Monopterus_albus
ENSAMXG00000039600	gfi1ab	100	57.569	MGP_CAROLIEiJ_G0027508	Gfi1	100	96.296	Mus_caroli
ENSAMXG00000039600	gfi1ab	100	57.110	ENSMUSG00000029275	Gfi1	100	57.569	Mus_musculus
ENSAMXG00000039600	gfi1ab	100	57.666	MGP_PahariEiJ_G0017280	Gfi1	100	96.296	Mus_pahari
ENSAMXG00000039600	gfi1ab	100	57.110	MGP_SPRETEiJ_G0028507	Gfi1	100	57.569	Mus_spretus
ENSAMXG00000039600	gfi1ab	100	64.122	ENSMPUG00000004178	GFI1	97	64.631	Mustela_putorius_furo
ENSAMXG00000039600	gfi1ab	100	60.664	ENSMLUG00000015191	GFI1	97	60.664	Myotis_lucifugus
ENSAMXG00000039600	gfi1ab	100	64.677	ENSNBRG00000015774	gfi1ab	100	64.677	Neolamprologus_brichardi
ENSAMXG00000039600	gfi1ab	86	60.215	ENSNLEG00000010470	GFI1	87	63.068	Nomascus_leucogenys
ENSAMXG00000039600	gfi1ab	100	59.132	ENSOPRG00000001473	GFI1	100	59.589	Ochotona_princeps
ENSAMXG00000039600	gfi1ab	100	65.491	ENSONIG00000019246	gfi1ab	100	65.491	Oreochromis_niloticus
ENSAMXG00000039600	gfi1ab	98	53.403	ENSOCUG00000023553	GFI1	93	53.927	Oryctolagus_cuniculus
ENSAMXG00000039600	gfi1ab	100	62.069	ENSORLG00000013806	gfi1ab	100	62.069	Oryzias_latipes
ENSAMXG00000039600	gfi1ab	100	57.457	ENSORLG00000005060	GFI1	100	60.250	Oryzias_latipes
ENSAMXG00000039600	gfi1ab	100	56.430	ENSORLG00020002817	GFI1	100	56.430	Oryzias_latipes_hni
ENSAMXG00000039600	gfi1ab	100	61.823	ENSORLG00020001602	gfi1ab	100	61.823	Oryzias_latipes_hni
ENSAMXG00000039600	gfi1ab	100	55.911	ENSORLG00015006070	GFI1	100	58.955	Oryzias_latipes_hsok
ENSAMXG00000039600	gfi1ab	100	56.235	ENSOMEG00000016722	GFI1	100	58.561	Oryzias_melastigma
ENSAMXG00000039600	gfi1ab	100	62.750	ENSOGAG00000027913	GFI1	100	63.250	Otolemur_garnettii
ENSAMXG00000039600	gfi1ab	100	63.307	ENSPPAG00000042186	GFI1	100	63.824	Pan_paniscus
ENSAMXG00000039600	gfi1ab	100	60.890	ENSPPRG00000007521	GFI1	100	61.358	Panthera_pardus
ENSAMXG00000039600	gfi1ab	100	59.485	ENSPTRG00000043053	GFI1	100	59.953	Pan_troglodytes
ENSAMXG00000039600	gfi1ab	100	59.251	ENSPANG00000016433	GFI1	100	59.719	Papio_anubis
ENSAMXG00000039600	gfi1ab	100	67.574	ENSPKIG00000004263	GFI1	100	67.574	Paramormyrops_kingsleyae
ENSAMXG00000039600	gfi1ab	87	64.103	ENSPSIG00000008734	GFI1	97	64.672	Pelodiscus_sinensis
ENSAMXG00000039600	gfi1ab	99	52.507	ENSPMGG00000011041	GFI1	99	52.507	Periophthalmus_magnuspinnatus
ENSAMXG00000039600	gfi1ab	100	64.103	ENSPMGG00000012546	gfi1ab	100	64.615	Periophthalmus_magnuspinnatus
ENSAMXG00000039600	gfi1ab	100	61.268	ENSPCIG00000013728	GFI1	100	61.737	Phascolarctos_cinereus
ENSAMXG00000039600	gfi1ab	100	64.938	ENSPFOG00000023214	gfi1ab	100	64.938	Poecilia_formosa
ENSAMXG00000039600	gfi1ab	100	57.908	ENSPLAG00000005376	GFI1	91	61.071	Poecilia_latipinna
ENSAMXG00000039600	gfi1ab	100	64.938	ENSPLAG00000010879	gfi1ab	100	64.938	Poecilia_latipinna
ENSAMXG00000039600	gfi1ab	100	64.589	ENSPMEG00000013694	gfi1ab	100	64.589	Poecilia_mexicana
ENSAMXG00000039600	gfi1ab	100	58.191	ENSPMEG00000019299	GFI1	100	60.391	Poecilia_mexicana
ENSAMXG00000039600	gfi1ab	100	51.074	ENSPREG00000007997	GFI1	100	53.786	Poecilia_reticulata
ENSAMXG00000039600	gfi1ab	100	64.662	ENSPREG00000014097	gfi1ab	100	64.662	Poecilia_reticulata
ENSAMXG00000039600	gfi1ab	100	50.000	ENSPCAG00000011020	GFI1	100	50.000	Procavia_capensis
ENSAMXG00000039600	gfi1ab	100	59.070	ENSPCOG00000020540	GFI1	100	59.535	Propithecus_coquereli
ENSAMXG00000039600	gfi1ab	100	60.849	ENSPVAG00000006928	GFI1	100	61.611	Pteropus_vampyrus
ENSAMXG00000039600	gfi1ab	100	65.743	ENSPNYG00000021183	gfi1ab	100	65.743	Pundamilia_nyererei
ENSAMXG00000039600	gfi1ab	100	59.585	ENSPNAG00000028014	GFI1	100	59.585	Pygocentrus_nattereri
ENSAMXG00000039600	gfi1ab	100	87.895	ENSPNAG00000027258	gfi1ab	100	87.895	Pygocentrus_nattereri
ENSAMXG00000039600	gfi1ab	100	58.291	ENSPNAG00000014299	-	97	58.291	Pygocentrus_nattereri
ENSAMXG00000039600	gfi1ab	100	58.257	ENSRNOG00000002042	Gfi1	100	58.447	Rattus_norvegicus
ENSAMXG00000039600	gfi1ab	100	59.485	ENSRBIG00000036467	GFI1	100	59.953	Rhinopithecus_bieti
ENSAMXG00000039600	gfi1ab	100	59.485	ENSRROG00000031687	GFI1	100	59.953	Rhinopithecus_roxellana
ENSAMXG00000039600	gfi1ab	100	59.719	ENSSBOG00000031300	GFI1	100	60.187	Saimiri_boliviensis_boliviensis
ENSAMXG00000039600	gfi1ab	100	68.812	ENSSFOG00015020295	gfi1	100	68.812	Scleropages_formosus
ENSAMXG00000039600	gfi1ab	52	56.566	ENSSFOG00015008114	-	98	41.316	Scleropages_formosus
ENSAMXG00000039600	gfi1ab	100	63.636	ENSSMAG00000002782	gfi1ab	100	63.889	Scophthalmus_maximus
ENSAMXG00000039600	gfi1ab	100	63.544	ENSSDUG00000022410	gfi1ab	100	63.797	Seriola_dumerili
ENSAMXG00000039600	gfi1ab	100	63.544	ENSSLDG00000020163	gfi1ab	100	63.797	Seriola_lalandi_dorsalis
ENSAMXG00000039600	gfi1ab	79	75.000	ENSSPAG00000009140	gfi1ab	100	75.000	Stegastes_partitus
ENSAMXG00000039600	gfi1ab	100	61.283	ENSSSCG00000006902	GFI1	100	61.758	Sus_scrofa
ENSAMXG00000039600	gfi1ab	85	65.318	ENSTGUG00000006060	GFI1	99	65.896	Taeniopygia_guttata
ENSAMXG00000039600	gfi1ab	100	63.819	ENSTRUG00000000415	gfi1ab	100	63.819	Takifugu_rubripes
ENSAMXG00000039600	gfi1ab	100	65.394	ENSTNIG00000000651	gfi1ab	97	65.174	Tetraodon_nigroviridis
ENSAMXG00000039600	gfi1ab	100	60.514	ENSTTRG00000000082	GFI1	100	60.981	Tursiops_truncatus
ENSAMXG00000039600	gfi1ab	100	62.892	ENSUAMG00000021124	GFI1	91	63.373	Ursus_americanus
ENSAMXG00000039600	gfi1ab	100	61.692	ENSXETG00000023006	gfi1	98	62.189	Xenopus_tropicalis
ENSAMXG00000039600	gfi1ab	100	45.455	ENSXMAG00000009274	GFI1	86	47.907	Xiphophorus_maculatus
ENSAMXG00000039600	gfi1ab	100	64.662	ENSXMAG00000010523	gfi1ab	100	64.662	Xiphophorus_maculatus