EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000039881 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 2148 bases
Position: chrAPWO02001929.1:17388-19535
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000036357	zf-C2H2	PF00096.26	7.1e-51	1	7
ENSAMXP00000036357	zf-C2H2	PF00096.26	7.1e-51	2	7
ENSAMXP00000036357	zf-C2H2	PF00096.26	7.1e-51	3	7
ENSAMXP00000036357	zf-C2H2	PF00096.26	7.1e-51	4	7
ENSAMXP00000036357	zf-C2H2	PF00096.26	7.1e-51	5	7
ENSAMXP00000036357	zf-C2H2	PF00096.26	7.1e-51	6	7
ENSAMXP00000036357	zf-C2H2	PF00096.26	7.1e-51	7	7
ENSAMXP00000036357	zf-met	PF12874.7	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000054263	-	2148	-	ENSAMXP00000036357	715 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000039881's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000039881's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000039881	-	86	49.412	ENSAMXG00000018161	-	95	71.125
ENSAMXG00000039881	-	81	68.328	ENSAMXG00000035809	-	99	67.449
ENSAMXG00000039881	-	91	57.143	ENSAMXG00000030963	-	96	58.182
ENSAMXG00000039881	-	52	38.140	ENSAMXG00000032642	znf408	54	42.632
ENSAMXG00000039881	-	82	56.176	ENSAMXG00000042275	-	93	56.380
ENSAMXG00000039881	-	76	65.487	ENSAMXG00000041128	-	90	64.897
ENSAMXG00000039881	-	53	65.672	ENSAMXG00000029161	-	90	65.672
ENSAMXG00000039881	-	54	42.857	ENSAMXG00000044096	-	79	42.857
ENSAMXG00000039881	-	63	69.412	ENSAMXG00000039162	-	95	66.769
ENSAMXG00000039881	-	51	49.524	ENSAMXG00000014745	-	81	47.239
ENSAMXG00000039881	-	85	80.266	ENSAMXG00000038156	-	96	80.266
ENSAMXG00000039881	-	51	57.988	ENSAMXG00000035437	-	97	58.580
ENSAMXG00000039881	-	59	67.206	ENSAMXG00000037703	-	84	67.206
ENSAMXG00000039881	-	55	51.562	ENSAMXG00000034096	-	89	50.485
ENSAMXG00000039881	-	54	54.489	ENSAMXG00000033201	-	94	54.489
ENSAMXG00000039881	-	90	75.081	ENSAMXG00000030911	-	97	75.081
ENSAMXG00000039881	-	85	48.409	ENSAMXG00000037885	-	97	49.570
ENSAMXG00000039881	-	98	59.111	ENSAMXG00000036567	-	90	58.980
ENSAMXG00000039881	-	81	56.790	ENSAMXG00000001626	-	92	56.805
ENSAMXG00000039881	-	50	44.152	ENSAMXG00000013492	-	97	43.506
ENSAMXG00000039881	-	50	50.698	ENSAMXG00000012873	-	96	53.571
ENSAMXG00000039881	-	51	59.941	ENSAMXG00000009776	-	96	63.192
ENSAMXG00000039881	-	81	61.404	ENSAMXG00000031794	-	94	61.877
ENSAMXG00000039881	-	89	65.574	ENSAMXG00000035690	-	93	65.574
ENSAMXG00000039881	-	58	65.487	ENSAMXG00000031900	-	94	64.897
ENSAMXG00000039881	-	50	38.614	ENSAMXG00000024907	znf319b	84	34.463
ENSAMXG00000039881	-	82	55.291	ENSAMXG00000040806	-	88	57.345
ENSAMXG00000039881	-	87	89.474	ENSAMXG00000031501	-	93	89.474
ENSAMXG00000039881	-	99	71.540	ENSAMXG00000039182	-	97	63.554
ENSAMXG00000039881	-	50	64.948	ENSAMXG00000034344	-	77	64.948
ENSAMXG00000039881	-	81	61.856	ENSAMXG00000030742	-	98	60.294
ENSAMXG00000039881	-	87	65.432	ENSAMXG00000037923	-	99	72.321
ENSAMXG00000039881	-	87	56.970	ENSAMXG00000037717	-	97	56.970
ENSAMXG00000039881	-	89	55.924	ENSAMXG00000043291	-	91	60.109
ENSAMXG00000039881	-	71	71.930	ENSAMXG00000024978	-	96	72.222
ENSAMXG00000039881	-	50	45.161	ENSAMXG00000015228	-	56	45.161
ENSAMXG00000039881	-	85	70.326	ENSAMXG00000041404	-	96	70.294
ENSAMXG00000039881	-	52	54.419	ENSAMXG00000044028	-	92	54.438
ENSAMXG00000039881	-	50	55.162	ENSAMXG00000038280	-	82	55.162
ENSAMXG00000039881	-	77	69.209	ENSAMXG00000009558	-	94	50.485
ENSAMXG00000039881	-	50	39.143	ENSAMXG00000033299	-	68	48.958
ENSAMXG00000039881	-	50	40.566	ENSAMXG00000033001	-	53	40.566
ENSAMXG00000039881	-	81	58.507	ENSAMXG00000031496	-	88	57.738
ENSAMXG00000039881	-	51	48.161	ENSAMXG00000026143	-	97	50.147
ENSAMXG00000039881	-	87	57.941	ENSAMXG00000040630	-	99	56.176
ENSAMXG00000039881	-	66	74.627	ENSAMXG00000025455	-	98	74.328
ENSAMXG00000039881	-	77	63.393	ENSAMXG00000025452	-	99	62.462
ENSAMXG00000039881	-	99	74.408	ENSAMXG00000029518	-	88	71.667
ENSAMXG00000039881	-	81	67.359	ENSAMXG00000029828	-	98	67.656
ENSAMXG00000039881	-	91	70.037	ENSAMXG00000035145	-	94	74.121
ENSAMXG00000039881	-	50	65.359	ENSAMXG00000041721	-	65	65.359
ENSAMXG00000039881	-	81	59.050	ENSAMXG00000032212	-	87	59.050
ENSAMXG00000039881	-	60	56.176	ENSAMXG00000036915	-	98	54.706
ENSAMXG00000039881	-	81	60.619	ENSAMXG00000030530	-	98	60.807
ENSAMXG00000039881	-	81	67.544	ENSAMXG00000041865	-	97	46.447
ENSAMXG00000039881	-	54	64.815	ENSAMXG00000043019	-	93	64.815
ENSAMXG00000039881	-	81	67.353	ENSAMXG00000040212	-	82	67.257
ENSAMXG00000039881	-	83	63.385	ENSAMXG00000037760	-	95	63.385
ENSAMXG00000039881	-	51	52.145	ENSAMXG00000043541	-	80	50.453
ENSAMXG00000039881	-	50	59.587	ENSAMXG00000034847	-	90	59.302
ENSAMXG00000039881	-	77	58.735	ENSAMXG00000031844	-	90	58.735
ENSAMXG00000039881	-	80	67.539	ENSAMXG00000007092	-	99	66.404
ENSAMXG00000039881	-	72	69.170	ENSAMXG00000031489	-	97	69.170
ENSAMXG00000039881	-	86	65.663	ENSAMXG00000029178	-	96	64.653
ENSAMXG00000039881	-	86	64.706	ENSAMXG00000035875	-	99	54.908
ENSAMXG00000039881	-	90	74.118	ENSAMXG00000032457	-	99	73.647
ENSAMXG00000039881	-	85	69.912	ENSAMXG00000000353	-	93	69.912
ENSAMXG00000039881	-	81	66.261	ENSAMXG00000036762	-	96	66.565
ENSAMXG00000039881	-	52	46.875	ENSAMXG00000029660	-	53	46.875
ENSAMXG00000039881	-	82	64.201	ENSAMXG00000039432	-	93	63.205
ENSAMXG00000039881	-	67	57.020	ENSAMXG00000039770	-	81	55.840
ENSAMXG00000039881	-	81	51.554	ENSAMXG00000025965	-	95	52.216
ENSAMXG00000039881	-	50	55.521	ENSAMXG00000042633	-	93	64.474
ENSAMXG00000039881	-	77	56.481	ENSAMXG00000040677	-	84	56.481
ENSAMXG00000039881	-	52	62.887	ENSAMXG00000036233	-	80	62.887
ENSAMXG00000039881	-	89	89.231	ENSAMXG00000031009	-	94	89.231
ENSAMXG00000039881	-	63	72.571	ENSAMXG00000008613	-	97	72.571
ENSAMXG00000039881	-	87	62.614	ENSAMXG00000010078	-	86	63.830
ENSAMXG00000039881	-	50	37.410	ENSAMXG00000033252	-	91	50.000
ENSAMXG00000039881	-	74	58.112	ENSAMXG00000034402	-	91	58.112
ENSAMXG00000039881	-	58	58.892	ENSAMXG00000036849	-	87	58.892
ENSAMXG00000039881	-	55	53.271	ENSAMXG00000010805	-	94	53.271
ENSAMXG00000039881	-	68	58.710	ENSAMXG00000039004	-	92	59.631
ENSAMXG00000039881	-	79	57.672	ENSAMXG00000017959	-	95	57.672
ENSAMXG00000039881	-	50	52.273	ENSAMXG00000016921	znf341	51	52.273
ENSAMXG00000039881	-	86	59.406	ENSAMXG00000044110	-	87	57.612
ENSAMXG00000039881	-	50	63.127	ENSAMXG00000010930	-	81	63.127
ENSAMXG00000039881	-	83	51.343	ENSAMXG00000042174	-	92	51.343
ENSAMXG00000039881	-	58	51.734	ENSAMXG00000029960	-	94	52.381
ENSAMXG00000039881	-	85	68.824	ENSAMXG00000039879	-	98	49.081
ENSAMXG00000039881	-	85	70.126	ENSAMXG00000039744	-	99	70.126
ENSAMXG00000039881	-	89	75.641	ENSAMXG00000017609	-	89	75.641

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000039881	-	88	43.917	ENSAPLG00000012660	-	81	43.917	Anas_platyrhynchos
ENSAMXG00000039881	-	54	49.538	ENSEASG00005020341	-	94	47.840	Equus_asinus_asinus
ENSAMXG00000039881	-	54	49.538	ENSECAG00000017293	-	94	47.840	Equus_caballus
ENSAMXG00000039881	-	56	47.256	ENSECAG00000039445	-	91	47.256	Equus_caballus
ENSAMXG00000039881	-	62	47.761	ENSGAGG00000006683	-	86	62.667	Gopherus_agassizii
ENSAMXG00000039881	-	71	65.625	ENSGAGG00000006960	-	73	65.625	Gopherus_agassizii
ENSAMXG00000039881	-	57	51.176	ENSGAGG00000017986	-	90	51.786	Gopherus_agassizii
ENSAMXG00000039881	-	54	50.720	ENSGAGG00000019349	-	72	50.720	Gopherus_agassizii
ENSAMXG00000039881	-	50	63.158	ENSGAGG00000004740	-	88	59.829	Gopherus_agassizii
ENSAMXG00000039881	-	74	64.122	ENSIPUG00000015400	-	97	64.122	Ictalurus_punctatus
ENSAMXG00000039881	-	50	55.396	ENSIPUG00000015177	-	66	48.512	Ictalurus_punctatus
ENSAMXG00000039881	-	58	46.608	ENSMPUG00000008437	-	87	46.608	Mustela_putorius_furo
ENSAMXG00000039881	-	50	50.294	ENSPTIG00000009259	-	96	50.294	Panthera_tigris_altaica
ENSAMXG00000039881	-	50	59.459	ENSPNAG00000003919	-	91	54.392	Pygocentrus_nattereri
ENSAMXG00000039881	-	54	59.076	ENSPNAG00000018437	-	76	56.495	Pygocentrus_nattereri
ENSAMXG00000039881	-	73	61.059	ENSPNAG00000003526	-	88	60.815	Pygocentrus_nattereri
ENSAMXG00000039881	-	50	60.927	ENSPNAG00000016045	-	67	60.952	Pygocentrus_nattereri
ENSAMXG00000039881	-	52	64.384	ENSPNAG00000028765	-	82	64.384	Pygocentrus_nattereri
ENSAMXG00000039881	-	50	55.769	ENSPNAG00000002287	-	84	67.105	Pygocentrus_nattereri
ENSAMXG00000039881	-	70	59.686	ENSPNAG00000017455	-	75	52.529	Pygocentrus_nattereri
ENSAMXG00000039881	-	50	55.839	ENSPNAG00000012138	-	91	54.753	Pygocentrus_nattereri
ENSAMXG00000039881	-	77	63.914	ENSPNAG00000018471	-	78	63.914	Pygocentrus_nattereri