EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000039977 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 57888 bases
Position: chrAPWO02000247.1:42090-99977
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000044568	zf-C2H2	PF00096.26	2.8e-72	1	11
ENSAMXP00000044568	zf-C2H2	PF00096.26	2.8e-72	2	11
ENSAMXP00000044568	zf-C2H2	PF00096.26	2.8e-72	3	11
ENSAMXP00000044568	zf-C2H2	PF00096.26	2.8e-72	4	11
ENSAMXP00000044568	zf-C2H2	PF00096.26	2.8e-72	5	11
ENSAMXP00000044568	zf-C2H2	PF00096.26	2.8e-72	6	11
ENSAMXP00000044568	zf-C2H2	PF00096.26	2.8e-72	7	11
ENSAMXP00000044568	zf-C2H2	PF00096.26	2.8e-72	8	11
ENSAMXP00000044568	zf-C2H2	PF00096.26	2.8e-72	9	11
ENSAMXP00000044568	zf-C2H2	PF00096.26	2.8e-72	10	11
ENSAMXP00000044568	zf-C2H2	PF00096.26	2.8e-72	11	11
ENSAMXP00000044568	zf-met	PF12874.7	1.6e-12	1	2
ENSAMXP00000044568	zf-met	PF12874.7	1.6e-12	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000037784	-	1125	-	ENSAMXP00000044568	374 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000039977's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000039977's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000039977	-	94	46.535	ENSAMXG00000007973	-	97	46.907
ENSAMXG00000039977	-	88	68.285	ENSAMXG00000029828	-	97	68.902
ENSAMXG00000039977	-	88	74.845	ENSAMXG00000018161	-	94	74.845
ENSAMXG00000039977	-	99	68.317	ENSAMXG00000039700	-	95	68.317
ENSAMXG00000039977	-	94	71.692	ENSAMXG00000036762	-	96	73.089
ENSAMXG00000039977	-	89	41.722	ENSAMXG00000006669	GFI1	54	41.722
ENSAMXG00000039977	-	95	60.759	ENSAMXG00000034402	-	98	61.280
ENSAMXG00000039977	-	94	55.191	ENSAMXG00000038536	-	88	56.734
ENSAMXG00000039977	-	89	73.423	ENSAMXG00000035920	-	87	73.423
ENSAMXG00000039977	-	95	33.602	ENSAMXG00000035525	znf646	91	33.602
ENSAMXG00000039977	-	89	46.739	ENSAMXG00000037382	-	71	45.370
ENSAMXG00000039977	-	96	58.333	ENSAMXG00000033124	-	65	58.333
ENSAMXG00000039977	-	98	63.333	ENSAMXG00000013274	-	96	60.535
ENSAMXG00000039977	-	96	72.468	ENSAMXG00000000353	-	93	72.468
ENSAMXG00000039977	-	93	76.119	ENSAMXG00000031501	-	95	76.119
ENSAMXG00000039977	-	92	64.605	ENSAMXG00000039752	-	95	64.286
ENSAMXG00000039977	-	99	61.837	ENSAMXG00000042593	-	99	61.837
ENSAMXG00000039977	-	94	57.143	ENSAMXG00000034344	-	76	57.143
ENSAMXG00000039977	-	93	60.417	ENSAMXG00000012604	-	96	60.417
ENSAMXG00000039977	-	96	61.628	ENSAMXG00000037709	-	89	61.628
ENSAMXG00000039977	-	89	68.868	ENSAMXG00000042167	-	93	67.176
ENSAMXG00000039977	-	89	72.845	ENSAMXG00000004610	-	96	72.845
ENSAMXG00000039977	-	90	39.130	ENSAMXG00000034158	scrt2	52	39.130
ENSAMXG00000039977	-	86	38.182	ENSAMXG00000029059	-	67	38.182
ENSAMXG00000039977	-	90	60.000	ENSAMXG00000042784	-	95	60.000
ENSAMXG00000039977	-	96	72.222	ENSAMXG00000040212	-	91	73.803
ENSAMXG00000039977	-	93	48.413	ENSAMXG00000033252	-	99	48.413
ENSAMXG00000039977	-	89	72.024	ENSAMXG00000035809	-	99	74.242
ENSAMXG00000039977	-	93	39.007	ENSAMXG00000038235	snai2	60	39.007
ENSAMXG00000039977	-	91	64.983	ENSAMXG00000037326	-	95	64.983
ENSAMXG00000039977	-	93	65.781	ENSAMXG00000030742	-	98	67.173
ENSAMXG00000039977	-	88	75.135	ENSAMXG00000032457	-	91	74.164
ENSAMXG00000039977	-	96	59.091	ENSAMXG00000043541	-	86	59.091
ENSAMXG00000039977	-	96	59.859	ENSAMXG00000010805	-	97	60.140
ENSAMXG00000039977	-	91	70.326	ENSAMXG00000032619	-	99	70.326
ENSAMXG00000039977	-	95	64.662	ENSAMXG00000042633	-	97	63.277
ENSAMXG00000039977	-	89	68.156	ENSAMXG00000041128	-	87	70.536
ENSAMXG00000039977	-	89	73.955	ENSAMXG00000007092	-	99	73.955
ENSAMXG00000039977	-	95	63.605	ENSAMXG00000036633	-	66	63.545
ENSAMXG00000039977	-	93	37.705	ENSAMXG00000024907	znf319b	86	37.698
ENSAMXG00000039977	-	95	74.859	ENSAMXG00000043423	-	78	74.859
ENSAMXG00000039977	-	97	65.607	ENSAMXG00000040677	-	90	65.607
ENSAMXG00000039977	-	95	61.638	ENSAMXG00000010078	-	90	64.748
ENSAMXG00000039977	-	91	70.492	ENSAMXG00000030911	-	66	70.492
ENSAMXG00000039977	-	95	59.777	ENSAMXG00000031307	-	68	59.777
ENSAMXG00000039977	-	94	43.855	ENSAMXG00000012589	-	86	43.855
ENSAMXG00000039977	-	96	72.857	ENSAMXG00000035690	-	80	72.857
ENSAMXG00000039977	-	95	69.375	ENSAMXG00000034847	-	89	70.948
ENSAMXG00000039977	-	99	64.751	ENSAMXG00000037717	-	97	64.751
ENSAMXG00000039977	-	87	74.516	ENSAMXG00000025455	-	98	75.085
ENSAMXG00000039977	-	99	53.846	ENSAMXG00000038284	-	97	57.012
ENSAMXG00000039977	-	95	54.452	ENSAMXG00000042174	-	97	57.009
ENSAMXG00000039977	-	95	73.967	ENSAMXG00000041861	-	94	73.967
ENSAMXG00000039977	-	98	63.966	ENSAMXG00000035875	-	99	63.966
ENSAMXG00000039977	-	98	62.382	ENSAMXG00000036915	-	94	63.636
ENSAMXG00000039977	-	90	44.776	ENSAMXG00000035246	-	66	44.776
ENSAMXG00000039977	-	91	63.050	ENSAMXG00000001626	-	93	63.050
ENSAMXG00000039977	-	97	55.777	ENSAMXG00000034096	-	91	55.777
ENSAMXG00000039977	-	90	73.913	ENSAMXG00000029518	-	53	53.299
ENSAMXG00000039977	-	92	46.104	ENSAMXG00000034934	-	79	46.104
ENSAMXG00000039977	-	97	56.522	ENSAMXG00000026143	-	98	57.704
ENSAMXG00000039977	-	94	71.053	ENSAMXG00000039182	-	64	71.053
ENSAMXG00000039977	-	91	63.855	ENSAMXG00000044107	-	88	63.855
ENSAMXG00000039977	-	99	63.230	ENSAMXG00000017959	-	99	63.230
ENSAMXG00000039977	-	89	72.694	ENSAMXG00000035949	-	74	72.694
ENSAMXG00000039977	-	99	64.835	ENSAMXG00000040806	-	93	63.393
ENSAMXG00000039977	-	94	63.095	ENSAMXG00000033201	-	97	63.095
ENSAMXG00000039977	-	95	40.394	ENSAMXG00000033299	-	77	40.828
ENSAMXG00000039977	-	94	71.293	ENSAMXG00000041865	-	98	71.293
ENSAMXG00000039977	-	89	46.939	ENSAMXG00000041862	-	99	43.697
ENSAMXG00000039977	-	95	67.876	ENSAMXG00000030963	-	79	72.222
ENSAMXG00000039977	-	89	72.981	ENSAMXG00000031009	-	86	72.981
ENSAMXG00000039977	-	89	74.074	ENSAMXG00000025965	-	94	75.229
ENSAMXG00000039977	-	90	59.444	ENSAMXG00000039770	-	86	63.095
ENSAMXG00000039977	-	97	64.966	ENSAMXG00000036241	-	89	60.472
ENSAMXG00000039977	-	96	66.949	ENSAMXG00000035437	-	99	66.949
ENSAMXG00000039977	-	91	52.941	ENSAMXG00000035286	si:ch1073-224n8.1	84	53.509
ENSAMXG00000039977	-	93	75.243	ENSAMXG00000035683	-	98	75.243
ENSAMXG00000039977	-	86	73.026	ENSAMXG00000011804	-	86	73.026
ENSAMXG00000039977	-	96	66.561	ENSAMXG00000037760	-	100	66.667
ENSAMXG00000039977	-	89	45.968	ENSAMXG00000032845	-	54	45.968
ENSAMXG00000039977	-	98	65.591	ENSAMXG00000032841	-	85	65.591
ENSAMXG00000039977	-	89	73.333	ENSAMXG00000031646	-	95	73.333
ENSAMXG00000039977	-	95	68.085	ENSAMXG00000039432	-	100	72.103
ENSAMXG00000039977	-	96	38.788	ENSAMXG00000041864	prdm5	88	38.788
ENSAMXG00000039977	-	92	76.803	ENSAMXG00000029178	-	97	77.370
ENSAMXG00000039977	-	88	38.117	ENSAMXG00000044034	-	82	37.991
ENSAMXG00000039977	-	95	63.084	ENSAMXG00000032212	-	94	63.084
ENSAMXG00000039977	-	96	59.474	ENSAMXG00000012873	-	95	59.474
ENSAMXG00000039977	-	88	67.568	ENSAMXG00000030530	-	97	72.303
ENSAMXG00000039977	-	90	45.509	ENSAMXG00000044096	-	79	45.509
ENSAMXG00000039977	-	91	63.529	ENSAMXG00000029109	-	86	63.529
ENSAMXG00000039977	-	89	68.750	ENSAMXG00000010930	-	81	68.750
ENSAMXG00000039977	-	89	75.710	ENSAMXG00000036567	-	76	75.710
ENSAMXG00000039977	-	93	60.907	ENSAMXG00000037143	-	97	62.614
ENSAMXG00000039977	-	97	64.162	ENSAMXG00000040630	-	99	69.318
ENSAMXG00000039977	-	91	69.914	ENSAMXG00000031900	-	94	73.700
ENSAMXG00000039977	-	89	73.352	ENSAMXG00000039879	-	97	76.453
ENSAMXG00000039977	-	90	73.558	ENSAMXG00000024978	-	96	76.829
ENSAMXG00000039977	-	98	57.022	ENSAMXG00000026144	-	98	58.730
ENSAMXG00000039977	-	92	65.418	ENSAMXG00000026142	-	91	65.418
ENSAMXG00000039977	-	94	49.045	ENSAMXG00000034333	-	85	52.688
ENSAMXG00000039977	-	95	48.951	ENSAMXG00000038122	-	93	55.696
ENSAMXG00000039977	-	88	68.731	ENSAMXG00000039016	-	80	68.731
ENSAMXG00000039977	-	92	65.964	ENSAMXG00000044110	-	88	65.964
ENSAMXG00000039977	-	91	70.588	ENSAMXG00000041725	-	91	70.588
ENSAMXG00000039977	-	95	63.284	ENSAMXG00000039408	-	97	67.078
ENSAMXG00000039977	-	96	68.924	ENSAMXG00000031794	-	100	71.254
ENSAMXG00000039977	-	93	74.212	ENSAMXG00000025452	-	99	74.212
ENSAMXG00000039977	-	90	64.563	ENSAMXG00000044028	-	95	64.563
ENSAMXG00000039977	-	93	72.054	ENSAMXG00000003002	-	92	72.054
ENSAMXG00000039977	-	91	70.809	ENSAMXG00000033500	-	93	72.783
ENSAMXG00000039977	-	93	49.470	ENSAMXG00000035127	-	93	47.328
ENSAMXG00000039977	-	96	65.052	ENSAMXG00000031496	-	92	63.407
ENSAMXG00000039977	-	94	61.579	ENSAMXG00000038325	-	96	61.579
ENSAMXG00000039977	-	92	66.997	ENSAMXG00000038324	-	81	66.997
ENSAMXG00000039977	-	95	63.707	ENSAMXG00000043291	-	69	63.707
ENSAMXG00000039977	-	87	76.393	ENSAMXG00000038636	-	98	76.393
ENSAMXG00000039977	-	90	37.391	ENSAMXG00000042624	SCRT1	53	37.391
ENSAMXG00000039977	-	89	70.690	ENSAMXG00000041404	-	96	74.286
ENSAMXG00000039977	-	90	64.341	ENSAMXG00000033013	-	81	64.341
ENSAMXG00000039977	-	95	59.533	ENSAMXG00000036257	-	91	59.533
ENSAMXG00000039977	-	91	50.685	ENSAMXG00000007441	-	61	50.685
ENSAMXG00000039977	-	91	62.115	ENSAMXG00000043019	-	94	62.115
ENSAMXG00000039977	-	94	53.867	ENSAMXG00000042746	-	88	56.410
ENSAMXG00000039977	-	87	41.872	ENSAMXG00000042191	zbtb47a	70	42.857
ENSAMXG00000039977	-	89	63.033	ENSAMXG00000029161	-	89	63.033
ENSAMXG00000039977	-	91	37.037	ENSAMXG00000038085	scrt1a	54	37.037
ENSAMXG00000039977	-	90	32.035	ENSAMXG00000008771	PRDM15	54	31.731
ENSAMXG00000039977	-	92	72.185	ENSAMXG00000009558	-	97	74.684
ENSAMXG00000039977	-	88	71.364	ENSAMXG00000035145	-	63	71.364
ENSAMXG00000039977	-	98	58.042	ENSAMXG00000029783	-	99	58.042
ENSAMXG00000039977	-	97	58.576	ENSAMXG00000032237	-	96	58.576
ENSAMXG00000039977	-	88	73.585	ENSAMXG00000039162	-	94	74.359
ENSAMXG00000039977	-	94	53.744	ENSAMXG00000043178	-	74	53.744
ENSAMXG00000039977	-	98	70.418	ENSAMXG00000036233	-	84	72.840
ENSAMXG00000039977	-	89	74.161	ENSAMXG00000037885	-	97	74.468
ENSAMXG00000039977	-	100	67.197	ENSAMXG00000036849	-	95	69.799
ENSAMXG00000039977	-	90	69.632	ENSAMXG00000039004	-	88	69.632
ENSAMXG00000039977	-	95	64.118	ENSAMXG00000042275	-	96	67.890
ENSAMXG00000039977	-	93	72.277	ENSAMXG00000042774	-	99	72.277
ENSAMXG00000039977	-	92	65.891	ENSAMXG00000043302	-	76	64.885
ENSAMXG00000039977	-	88	72.018	ENSAMXG00000031489	-	95	72.018
ENSAMXG00000039977	-	91	63.483	ENSAMXG00000019489	-	89	63.483
ENSAMXG00000039977	-	93	67.262	ENSAMXG00000009776	-	96	67.262
ENSAMXG00000039977	-	84	42.857	ENSAMXG00000033001	-	51	42.857
ENSAMXG00000039977	-	95	72.472	ENSAMXG00000017609	-	85	72.472
ENSAMXG00000039977	-	88	77.682	ENSAMXG00000041975	-	96	77.682
ENSAMXG00000039977	-	93	43.373	ENSAMXG00000037544	GFI1B	88	43.373
ENSAMXG00000039977	-	96	36.364	ENSAMXG00000002273	patz1	55	42.268
ENSAMXG00000039977	-	97	57.401	ENSAMXG00000038905	-	95	57.401
ENSAMXG00000039977	-	91	63.303	ENSAMXG00000029960	-	96	63.303
ENSAMXG00000039977	-	98	74.561	ENSAMXG00000041609	-	100	74.561
ENSAMXG00000039977	-	95	40.356	ENSAMXG00000025761	-	89	37.278
ENSAMXG00000039977	-	90	64.793	ENSAMXG00000031844	-	98	64.793
ENSAMXG00000039977	-	91	42.177	ENSAMXG00000034873	-	82	42.177
ENSAMXG00000039977	-	89	72.805	ENSAMXG00000043251	-	95	77.370
ENSAMXG00000039977	-	92	75.104	ENSAMXG00000037703	-	84	75.104
ENSAMXG00000039977	-	95	34.398	ENSAMXG00000039622	zbtb41	55	35.714
ENSAMXG00000039977	-	95	62.963	ENSAMXG00000038280	-	90	62.963
ENSAMXG00000039977	-	89	64.706	ENSAMXG00000041650	-	85	64.706
ENSAMXG00000039977	-	92	51.852	ENSAMXG00000034857	-	75	51.852
ENSAMXG00000039977	-	96	64.103	ENSAMXG00000009563	-	99	64.103
ENSAMXG00000039977	-	89	75.517	ENSAMXG00000039744	-	99	75.298
ENSAMXG00000039977	-	89	34.667	ENSAMXG00000005882	znf131	57	33.511
ENSAMXG00000039977	-	93	59.659	ENSAMXG00000043978	-	87	59.659
ENSAMXG00000039977	-	93	64.906	ENSAMXG00000037981	-	78	64.906
ENSAMXG00000039977	-	89	74.118	ENSAMXG00000029878	-	92	74.118
ENSAMXG00000039977	-	99	71.667	ENSAMXG00000041721	-	76	71.667
ENSAMXG00000039977	-	95	72.075	ENSAMXG00000042938	-	86	72.075
ENSAMXG00000039977	-	89	54.167	ENSAMXG00000013492	-	99	47.987
ENSAMXG00000039977	-	89	75.850	ENSAMXG00000008613	-	98	70.381
ENSAMXG00000039977	-	88	34.177	ENSAMXG00000016921	znf341	51	34.177
ENSAMXG00000039977	-	96	72.125	ENSAMXG00000034958	-	97	75.989
ENSAMXG00000039977	-	91	58.484	ENSAMXG00000030659	-	89	58.484
ENSAMXG00000039977	-	90	70.032	ENSAMXG00000038453	-	88	70.032
ENSAMXG00000039977	-	88	51.079	ENSAMXG00000014745	-	86	51.079
ENSAMXG00000039977	-	96	66.077	ENSAMXG00000037923	-	99	66.077

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000039977	-	95	46.953	ENSATEG00000010859	-	97	47.872	Anabas_testudineus
ENSAMXG00000039977	-	94	46.269	ENSCPBG00000009849	-	84	46.269	Chrysemys_picta_bellii
ENSAMXG00000039977	-	91	57.576	ENSELUG00000009575	-	99	55.285	Esox_lucius
ENSAMXG00000039977	-	95	63.423	ENSIPUG00000015121	-	72	63.423	Ictalurus_punctatus
ENSAMXG00000039977	-	93	44.286	ENSKMAG00000000543	-	95	44.720	Kryptolebias_marmoratus
ENSAMXG00000039977	-	92	43.382	ENSMAMG00000016519	-	89	42.560	Mastacembelus_armatus
ENSAMXG00000039977	-	98	44.224	ENSMZEG00005020574	-	86	44.224	Maylandia_zebra
ENSAMXG00000039977	-	95	44.231	ENSONIG00000007088	-	100	44.231	Oreochromis_niloticus
ENSAMXG00000039977	-	87	60.870	ENSPSIG00000000075	-	71	60.870	Pelodiscus_sinensis
ENSAMXG00000039977	-	95	63.063	ENSPNAG00000008480	-	97	63.063	Pygocentrus_nattereri
ENSAMXG00000039977	-	97	66.790	ENSPNAG00000012215	-	93	66.790	Pygocentrus_nattereri
ENSAMXG00000039977	-	90	42.286	ENSSMAG00000007396	-	83	43.119	Scophthalmus_maximus
ENSAMXG00000039977	-	95	56.106	ENSTBEG00000012287	-	99	56.106	Tupaia_belangeri