EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000039985 (Gene tree)
Gene ID: 103046210
Gene Symbol: rad54b
Alias: im:7137737|im:7153525
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 12094 bases
Position: chr3:7075925-7088018
Accession: 103046210
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000047224	ResIII	PF04851.15	1.1e-06	1	1
ENSAMXP00000033914	ResIII	PF04851.15	4.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000053131	-	2463	XM_007236506	ENSAMXP00000047224	820 (aa)	XP_007236568	-
ENSAMXT00000041588	-	2157	-	ENSAMXP00000033914	718 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000039985's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000039985's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000039985	rad54b	87	41.882	ENSAMXG00000012777	rad54l	87	42.033
ENSAMXG00000039985	rad54b	67	30.502	ENSAMXG00000015470	smarcad1a	69	30.502
ENSAMXG00000039985	rad54b	69	31.845	ENSAMXG00000011227	smarca1	51	32.340

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000039985	rad54b	97	56.548	ENSG00000197275	RAD54B	87	56.790	Homo_sapiens
ENSAMXG00000039985	rad54b	87	56.812	ENSG00000265817	FSBP	99	57.084	Homo_sapiens
ENSAMXG00000039985	rad54b	94	57.503	ENSAMEG00000005834	-	85	57.634	Ailuropoda_melanoleuca
ENSAMXG00000039985	rad54b	94	68.354	ENSACIG00000013005	rad54b	88	68.710	Amphilophus_citrinellus
ENSAMXG00000039985	rad54b	94	66.877	ENSAOCG00000008523	rad54b	85	67.344	Amphiprion_ocellaris
ENSAMXG00000039985	rad54b	94	65.278	ENSAPEG00000001673	rad54b	89	65.565	Amphiprion_percula
ENSAMXG00000039985	rad54b	94	68.314	ENSATEG00000001527	rad54b	90	68.542	Anabas_testudineus
ENSAMXG00000039985	rad54b	94	62.295	ENSAPLG00000014366	-	85	62.310	Anas_platyrhynchos
ENSAMXG00000039985	rad54b	94	59.873	ENSACAG00000003671	-	97	59.949	Anolis_carolinensis
ENSAMXG00000039985	rad54b	78	56.719	ENSANAG00000019528	-	98	58.075	Aotus_nancymaae
ENSAMXG00000039985	rad54b	97	67.445	ENSACLG00000007826	rad54b	91	69.476	Astatotilapia_calliptera
ENSAMXG00000039985	rad54b	95	58.291	ENSBTAG00000000632	RAD54B	85	58.471	Bos_taurus
ENSAMXG00000039985	rad54b	85	37.517	WBGene00013792	Y116A8C.13	82	37.517	Caenorhabditis_elegans
ENSAMXG00000039985	rad54b	95	57.803	ENSCJAG00000000080	-	99	57.476	Callithrix_jacchus
ENSAMXG00000039985	rad54b	94	58.166	ENSCAFG00000009179	RAD54B	85	58.302	Canis_familiaris
ENSAMXG00000039985	rad54b	94	58.198	ENSCAFG00020012084	-	85	58.333	Canis_lupus_dingo
ENSAMXG00000039985	rad54b	95	58.291	ENSCHIG00000008230	-	85	58.471	Capra_hircus
ENSAMXG00000039985	rad54b	94	58.260	ENSTSYG00000013234	-	85	58.524	Carlito_syrichta
ENSAMXG00000039985	rad54b	94	57.610	ENSCPOG00000011643	-	86	57.868	Cavia_porcellus
ENSAMXG00000039985	rad54b	95	57.519	ENSCCAG00000011754	-	99	57.163	Cebus_capucinus
ENSAMXG00000039985	rad54b	94	57.881	ENSCATG00000030661	-	99	57.597	Cercocebus_atys
ENSAMXG00000039985	rad54b	94	57.071	ENSCLAG00000010476	-	88	57.323	Chinchilla_lanigera
ENSAMXG00000039985	rad54b	94	57.881	ENSCSAG00000012712	-	85	58.142	Chlorocebus_sabaeus
ENSAMXG00000039985	rad54b	94	60.652	ENSCPBG00000003204	-	83	63.523	Chrysemys_picta_bellii
ENSAMXG00000039985	rad54b	97	56.527	ENSCANG00000017939	-	99	57.064	Colobus_angolensis_palliatus
ENSAMXG00000039985	rad54b	94	57.629	ENSCGRG00001020184	Rad54b	88	57.888	Cricetulus_griseus_chok1gshd
ENSAMXG00000039985	rad54b	94	56.620	ENSCGRG00000016752	Rad54b	87	56.870	Cricetulus_griseus_crigri
ENSAMXG00000039985	rad54b	94	66.582	ENSCSEG00000001601	rad54b	92	66.922	Cynoglossus_semilaevis
ENSAMXG00000039985	rad54b	94	68.056	ENSCVAG00000009200	rad54b	89	68.361	Cyprinodon_variegatus
ENSAMXG00000039985	rad54b	97	78.175	ENSDARG00000092134	rad54b	98	79.905	Danio_rerio
ENSAMXG00000039985	rad54b	94	58.638	ENSDNOG00000015535	-	85	58.906	Dasypus_novemcinctus
ENSAMXG00000039985	rad54b	97	56.793	ENSDORG00000002492	Rad54b	90	57.037	Dipodomys_ordii
ENSAMXG00000039985	rad54b	80	60.831	ENSETEG00000010605	-	85	60.831	Echinops_telfairi
ENSAMXG00000039985	rad54b	95	50.441	ENSEBUG00000009104	rad54b	83	50.958	Eptatretus_burgeri
ENSAMXG00000039985	rad54b	95	56.787	ENSEASG00005004021	-	88	56.944	Equus_asinus_asinus
ENSAMXG00000039985	rad54b	95	57.196	ENSECAG00000021949	-	91	57.360	Equus_caballus
ENSAMXG00000039985	rad54b	75	72.500	ENSEEUG00000008056	-	62	72.500	Erinaceus_europaeus
ENSAMXG00000039985	rad54b	95	66.833	ENSELUG00000009287	rad54b	84	67.170	Esox_lucius
ENSAMXG00000039985	rad54b	94	58.093	ENSFCAG00000015513	-	99	57.967	Felis_catus
ENSAMXG00000039985	rad54b	95	60.875	ENSFALG00000005467	-	85	61.006	Ficedula_albicollis
ENSAMXG00000039985	rad54b	94	56.858	ENSFDAG00000020541	-	86	57.107	Fukomys_damarensis
ENSAMXG00000039985	rad54b	94	67.554	ENSFHEG00000014382	rad54b	86	67.903	Fundulus_heteroclitus
ENSAMXG00000039985	rad54b	95	65.714	ENSGMOG00000014774	rad54b	99	65.915	Gadus_morhua
ENSAMXG00000039985	rad54b	94	61.202	ENSGALG00000043597	RAD54B	85	61.335	Gallus_gallus
ENSAMXG00000039985	rad54b	95	67.746	ENSGAFG00000007901	rad54b	91	67.939	Gambusia_affinis
ENSAMXG00000039985	rad54b	95	67.085	ENSGACG00000009128	rad54b	85	67.427	Gasterosteus_aculeatus
ENSAMXG00000039985	rad54b	94	60.826	ENSGAGG00000018747	-	85	60.957	Gopherus_agassizii
ENSAMXG00000039985	rad54b	97	56.740	ENSGGOG00000023516	-	87	56.984	Gorilla_gorilla
ENSAMXG00000039985	rad54b	94	69.018	ENSHBUG00000016017	rad54b	84	69.632	Haplochromis_burtoni
ENSAMXG00000039985	rad54b	94	56.484	ENSHGLG00000008263	RAD54B	85	56.784	Heterocephalus_glaber_female
ENSAMXG00000039985	rad54b	94	55.693	ENSHGLG00100008108	-	85	55.875	Heterocephalus_glaber_male
ENSAMXG00000039985	rad54b	94	65.173	ENSHCOG00000004764	rad54b	98	62.283	Hippocampus_comes
ENSAMXG00000039985	rad54b	95	82.309	ENSIPUG00000018531	rad54b	84	82.206	Ictalurus_punctatus
ENSAMXG00000039985	rad54b	95	56.382	ENSSTOG00000010791	-	85	56.927	Ictidomys_tridecemlineatus
ENSAMXG00000039985	rad54b	95	58.040	ENSJJAG00000010314	Rad54b	85	58.323	Jaculus_jaculus
ENSAMXG00000039985	rad54b	94	67.516	ENSKMAG00000004744	rad54b	90	67.866	Kryptolebias_marmoratus
ENSAMXG00000039985	rad54b	87	66.667	ENSLACG00000000859	-	99	62.633	Latimeria_chalumnae
ENSAMXG00000039985	rad54b	96	66.171	ENSLOCG00000010100	rad54b	93	66.709	Lepisosteus_oculatus
ENSAMXG00000039985	rad54b	94	55.472	ENSLAFG00000015315	-	96	55.711	Loxodonta_africana
ENSAMXG00000039985	rad54b	94	58.008	ENSMFAG00000031629	-	99	57.735	Macaca_fascicularis
ENSAMXG00000039985	rad54b	94	58.008	ENSMMUG00000005659	-	85	58.270	Macaca_mulatta
ENSAMXG00000039985	rad54b	94	57.755	ENSMNEG00000016408	-	86	58.015	Macaca_nemestrina
ENSAMXG00000039985	rad54b	94	57.881	ENSMLEG00000006946	-	85	58.142	Mandrillus_leucophaeus
ENSAMXG00000039985	rad54b	94	65.131	ENSMAMG00000012269	rad54b	89	65.327	Mastacembelus_armatus
ENSAMXG00000039985	rad54b	94	68.892	ENSMZEG00005005281	rad54b	94	69.309	Maylandia_zebra
ENSAMXG00000039985	rad54b	94	60.553	ENSMGAG00000012024	-	85	60.683	Meleagris_gallopavo
ENSAMXG00000039985	rad54b	94	57.809	ENSMAUG00000013586	Rad54b	88	58.069	Mesocricetus_auratus
ENSAMXG00000039985	rad54b	94	57.862	ENSMICG00000000754	-	89	58.122	Microcebus_murinus
ENSAMXG00000039985	rad54b	94	56.981	ENSMOCG00000020035	Rad54b	87	57.398	Microtus_ochrogaster
ENSAMXG00000039985	rad54b	94	66.708	ENSMMOG00000003394	rad54b	88	66.961	Mola_mola
ENSAMXG00000039985	rad54b	95	57.644	ENSMODG00000007343	-	96	57.901	Monodelphis_domestica
ENSAMXG00000039985	rad54b	81	64.286	ENSMALG00000001520	rad54b	99	67.975	Monopterus_albus
ENSAMXG00000039985	rad54b	94	57.197	MGP_CAROLIEiJ_G0025810	Rad54b	87	57.452	Mus_caroli
ENSAMXG00000039985	rad54b	94	56.242	ENSMUSG00000078773	Rad54b	87	56.489	Mus_musculus
ENSAMXG00000039985	rad54b	94	57.305	MGP_PahariEiJ_G0023933	Rad54b	87	57.541	Mus_pahari
ENSAMXG00000039985	rad54b	94	56.999	MGP_SPRETEiJ_G0026758	Rad54b	87	57.252	Mus_spretus
ENSAMXG00000039985	rad54b	94	57.610	ENSMPUG00000008878	-	96	57.741	Mustela_putorius_furo
ENSAMXG00000039985	rad54b	94	58.742	ENSMLUG00000008953	-	85	59.010	Myotis_lucifugus
ENSAMXG00000039985	rad54b	95	56.646	ENSNGAG00000017537	Rad54b	87	56.910	Nannospalax_galili
ENSAMXG00000039985	rad54b	94	68.987	ENSNBRG00000013394	rad54b	91	69.604	Neolamprologus_brichardi
ENSAMXG00000039985	rad54b	97	56.618	ENSNLEG00000003062	-	98	57.163	Nomascus_leucogenys
ENSAMXG00000039985	rad54b	77	59.690	ENSMEUG00000012426	-	69	59.690	Notamacropus_eugenii
ENSAMXG00000039985	rad54b	94	57.591	ENSODEG00000019564	-	86	57.848	Octodon_degus
ENSAMXG00000039985	rad54b	83	65.217	ENSODEG00000002650	-	92	65.217	Octodon_degus
ENSAMXG00000039985	rad54b	94	68.892	ENSONIG00000006067	rad54b	86	69.504	Oreochromis_niloticus
ENSAMXG00000039985	rad54b	90	58.453	ENSOANG00000011348	-	99	58.753	Ornithorhynchus_anatinus
ENSAMXG00000039985	rad54b	95	58.469	ENSOCUG00000016478	-	85	58.651	Oryctolagus_cuniculus
ENSAMXG00000039985	rad54b	94	67.762	ENSORLG00000008918	rad54b	99	69.579	Oryzias_latipes
ENSAMXG00000039985	rad54b	76	69.350	ENSORLG00020012171	rad54b	99	69.579	Oryzias_latipes_hni
ENSAMXG00000039985	rad54b	94	67.551	ENSORLG00015018536	rad54b	83	67.726	Oryzias_latipes_hsok
ENSAMXG00000039985	rad54b	92	68.482	ENSOMEG00000004345	rad54b	99	68.668	Oryzias_melastigma
ENSAMXG00000039985	rad54b	94	56.730	ENSOGAG00000007854	-	85	56.980	Otolemur_garnettii
ENSAMXG00000039985	rad54b	95	57.697	ENSOARG00000007691	-	96	57.868	Ovis_aries
ENSAMXG00000039985	rad54b	97	55.270	ENSPPAG00000029572	-	86	55.501	Pan_paniscus
ENSAMXG00000039985	rad54b	94	58.093	ENSPPRG00000007571	-	99	57.967	Panthera_pardus
ENSAMXG00000039985	rad54b	87	57.687	ENSPTIG00000012670	-	99	57.830	Panthera_tigris_altaica
ENSAMXG00000039985	rad54b	97	56.618	ENSPTRG00000020427	-	99	57.163	Pan_troglodytes
ENSAMXG00000039985	rad54b	94	57.881	ENSPANG00000019566	-	85	58.142	Papio_anubis
ENSAMXG00000039985	rad54b	95	67.588	ENSPKIG00000014974	rad54b	85	67.766	Paramormyrops_kingsleyae
ENSAMXG00000039985	rad54b	94	60.025	ENSPSIG00000002383	-	95	60.152	Pelodiscus_sinensis
ENSAMXG00000039985	rad54b	94	57.716	ENSPEMG00000012133	Rad54b	87	57.975	Peromyscus_maniculatus_bairdii
ENSAMXG00000039985	rad54b	95	58.911	ENSPMAG00000002916	rad54b	98	59.422	Petromyzon_marinus
ENSAMXG00000039985	rad54b	94	58.690	ENSPCIG00000020151	-	91	58.883	Phascolarctos_cinereus
ENSAMXG00000039985	rad54b	95	68.125	ENSPFOG00000023411	rad54b	83	68.488	Poecilia_formosa
ENSAMXG00000039985	rad54b	95	68.375	ENSPLAG00000010430	rad54b	83	68.742	Poecilia_latipinna
ENSAMXG00000039985	rad54b	95	68.125	ENSPMEG00000016873	rad54b	92	67.775	Poecilia_mexicana
ENSAMXG00000039985	rad54b	95	68.553	ENSPREG00000018443	rad54b	89	68.926	Poecilia_reticulata
ENSAMXG00000039985	rad54b	97	56.618	ENSPPYG00000018750	-	87	56.860	Pongo_abelii
ENSAMXG00000039985	rad54b	94	57.987	ENSPCOG00000026845	-	99	57.438	Propithecus_coquereli
ENSAMXG00000039985	rad54b	89	56.785	ENSPVAG00000000261	-	85	56.952	Pteropus_vampyrus
ENSAMXG00000039985	rad54b	94	68.528	ENSPNYG00000018303	rad54b	95	68.966	Pundamilia_nyererei
ENSAMXG00000039985	rad54b	95	87.706	ENSPNAG00000000295	rad54b	92	87.097	Pygocentrus_nattereri
ENSAMXG00000039985	rad54b	94	57.683	ENSRNOG00000039949	Rad54b	87	57.942	Rattus_norvegicus
ENSAMXG00000039985	rad54b	97	56.687	ENSRBIG00000020419	-	87	56.931	Rhinopithecus_bieti
ENSAMXG00000039985	rad54b	97	56.564	ENSRROG00000039897	-	87	56.807	Rhinopithecus_roxellana
ENSAMXG00000039985	rad54b	86	36.641	YBR073W	RDH54	79	36.768	Saccharomyces_cerevisiae
ENSAMXG00000039985	rad54b	95	57.412	ENSSBOG00000028501	-	85	57.888	Saimiri_boliviensis_boliviensis
ENSAMXG00000039985	rad54b	94	59.623	ENSSHAG00000017038	-	85	59.898	Sarcophilus_harrisii
ENSAMXG00000039985	rad54b	72	68.411	ENSSFOG00015008483	rad54b	92	68.601	Scleropages_formosus
ENSAMXG00000039985	rad54b	94	67.591	ENSSMAG00000018659	rad54b	90	68.000	Scophthalmus_maximus
ENSAMXG00000039985	rad54b	91	69.060	ENSSDUG00000001122	rad54b	80	69.060	Seriola_dumerili
ENSAMXG00000039985	rad54b	96	67.491	ENSSLDG00000013787	rad54b	94	62.593	Seriola_lalandi_dorsalis
ENSAMXG00000039985	rad54b	94	59.199	ENSSPUG00000016497	-	88	59.596	Sphenodon_punctatus
ENSAMXG00000039985	rad54b	94	67.844	ENSSPAG00000012800	rad54b	89	68.193	Stegastes_partitus
ENSAMXG00000039985	rad54b	95	58.543	ENSSSCG00000006101	-	97	58.726	Sus_scrofa
ENSAMXG00000039985	rad54b	95	60.897	ENSTGUG00000011880	-	85	60.902	Taeniopygia_guttata
ENSAMXG00000039985	rad54b	94	67.257	ENSTRUG00000010015	rad54b	83	67.430	Takifugu_rubripes
ENSAMXG00000039985	rad54b	95	55.528	ENSTTRG00000006312	-	85	55.669	Tursiops_truncatus
ENSAMXG00000039985	rad54b	94	57.881	ENSUMAG00000016401	-	85	58.015	Ursus_maritimus
ENSAMXG00000039985	rad54b	95	58.573	ENSVPAG00000003157	-	86	58.987	Vicugna_pacos
ENSAMXG00000039985	rad54b	94	50.125	ENSXETG00000025924	rad54b	97	50.566	Xenopus_tropicalis
ENSAMXG00000039985	rad54b	95	67.714	ENSXMAG00000013141	rad54b	90	68.072	Xiphophorus_maculatus