EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000040146 (Gene tree)
Gene ID: 103042440
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 4329 bases
Position: chr24:25254715-25259043
Accession: 103042440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000040714	HVSL	PF09749.9	3.1e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000031786	-	909	XM_022683873	ENSAMXP00000040714	302 (aa)	XP_022539594	-

Gene Model

Click here to download ENSAMXG00000040146's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000040146's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000040146	usb1	74	51.121	ENSG00000103005	USB1	99	51.643	Homo_sapiens
ENSAMXG00000040146	usb1	95	57.388	ENSAPOG00000011942	usb1	80	66.964	Acanthochromis_polyacanthus
ENSAMXG00000040146	usb1	75	52.000	ENSAMEG00000017205	USB1	84	52.000	Ailuropoda_melanoleuca
ENSAMXG00000040146	usb1	85	58.984	ENSACIG00000012234	usb1	99	56.410	Amphilophus_citrinellus
ENSAMXG00000040146	usb1	95	57.639	ENSAOCG00000014831	usb1	99	57.639	Amphiprion_ocellaris
ENSAMXG00000040146	usb1	95	57.986	ENSAPEG00000000296	usb1	99	57.986	Amphiprion_percula
ENSAMXG00000040146	usb1	74	65.919	ENSATEG00000009348	usb1	79	65.919	Anabas_testudineus
ENSAMXG00000040146	usb1	74	55.556	ENSAPLG00000002756	USB1	99	56.000	Anas_platyrhynchos
ENSAMXG00000040146	usb1	75	53.304	ENSACAG00000015481	USB1	99	53.304	Anolis_carolinensis
ENSAMXG00000040146	usb1	74	50.673	ENSANAG00000035640	USB1	84	50.673	Aotus_nancymaae
ENSAMXG00000040146	usb1	83	57.371	ENSACLG00000020586	usb1	99	54.167	Astatotilapia_calliptera
ENSAMXG00000040146	usb1	95	44.948	ENSBTAG00000015758	USB1	84	51.570	Bos_taurus
ENSAMXG00000040146	usb1	74	51.570	ENSCJAG00000011733	USB1	84	51.570	Callithrix_jacchus
ENSAMXG00000040146	usb1	75	51.327	ENSCAFG00000008556	USB1	60	51.786	Canis_familiaris
ENSAMXG00000040146	usb1	83	47.809	ENSCAFG00020009263	USB1	94	47.809	Canis_lupus_dingo
ENSAMXG00000040146	usb1	95	45.296	ENSCHIG00000024290	USB1	84	52.018	Capra_hircus
ENSAMXG00000040146	usb1	75	49.778	ENSTSYG00000006997	USB1	85	49.778	Carlito_syrichta
ENSAMXG00000040146	usb1	75	41.558	ENSCAPG00000009057	USB1	99	41.558	Cavia_aperea
ENSAMXG00000040146	usb1	95	44.444	ENSCPOG00000014325	USB1	86	49.351	Cavia_porcellus
ENSAMXG00000040146	usb1	74	51.570	ENSCCAG00000022132	USB1	84	51.570	Cebus_capucinus
ENSAMXG00000040146	usb1	74	51.570	ENSCATG00000032174	USB1	84	51.570	Cercocebus_atys
ENSAMXG00000040146	usb1	58	46.286	ENSCLAG00000007363	USB1	99	46.286	Chinchilla_lanigera
ENSAMXG00000040146	usb1	74	51.570	ENSCSAG00000004783	USB1	84	51.570	Chlorocebus_sabaeus
ENSAMXG00000040146	usb1	82	52.400	ENSCPBG00000026943	USB1	98	50.000	Chrysemys_picta_bellii
ENSAMXG00000040146	usb1	76	32.340	ENSCING00000011490	-	92	32.099	Ciona_intestinalis
ENSAMXG00000040146	usb1	75	33.473	ENSCSAVG00000000894	-	85	33.473	Ciona_savignyi
ENSAMXG00000040146	usb1	74	52.018	ENSCANG00000037135	USB1	84	52.018	Colobus_angolensis_palliatus
ENSAMXG00000040146	usb1	95	45.139	ENSCGRG00001011243	USB1	83	51.121	Cricetulus_griseus_chok1gshd
ENSAMXG00000040146	usb1	95	45.139	ENSCGRG00000013252	USB1	83	51.121	Cricetulus_griseus_crigri
ENSAMXG00000040146	usb1	95	56.849	ENSCSEG00000013881	usb1	81	63.393	Cynoglossus_semilaevis
ENSAMXG00000040146	usb1	74	61.233	ENSCVAG00000009252	usb1	97	61.674	Cyprinodon_variegatus
ENSAMXG00000040146	usb1	74	67.265	ENSDARG00000003841	usb1	99	56.803	Danio_rerio
ENSAMXG00000040146	usb1	74	51.570	ENSDORG00000001888	Usb1	84	51.570	Dipodomys_ordii
ENSAMXG00000040146	usb1	76	38.075	FBgn0037713	CG16790	89	38.075	Drosophila_melanogaster
ENSAMXG00000040146	usb1	95	38.832	ENSETEG00000019682	USB1	84	43.556	Echinops_telfairi
ENSAMXG00000040146	usb1	74	45.089	ENSEBUG00000005889	usb1	78	45.089	Eptatretus_burgeri
ENSAMXG00000040146	usb1	75	52.000	ENSEASG00005005484	USB1	85	52.000	Equus_asinus_asinus
ENSAMXG00000040146	usb1	75	52.000	ENSECAG00000019493	USB1	78	52.000	Equus_caballus
ENSAMXG00000040146	usb1	58	44.000	ENSEEUG00000000154	USB1	66	44.000	Erinaceus_europaeus
ENSAMXG00000040146	usb1	74	65.333	ENSELUG00000010974	usb1	82	65.333	Esox_lucius
ENSAMXG00000040146	usb1	75	50.667	ENSFCAG00000002693	USB1	84	50.667	Felis_catus
ENSAMXG00000040146	usb1	74	55.605	ENSFALG00000006876	USB1	83	55.605	Ficedula_albicollis
ENSAMXG00000040146	usb1	78	47.410	ENSFDAG00000010052	USB1	94	47.410	Fukomys_damarensis
ENSAMXG00000040146	usb1	85	54.615	ENSFHEG00000012334	usb1	77	63.918	Fundulus_heteroclitus
ENSAMXG00000040146	usb1	74	63.063	ENSGMOG00000004228	usb1	99	63.063	Gadus_morhua
ENSAMXG00000040146	usb1	74	54.709	ENSGALG00000035604	USB1	90	54.148	Gallus_gallus
ENSAMXG00000040146	usb1	95	55.782	ENSGAFG00000021890	usb1	81	64.889	Gambusia_affinis
ENSAMXG00000040146	usb1	90	55.351	ENSGACG00000003257	usb1	99	54.762	Gasterosteus_aculeatus
ENSAMXG00000040146	usb1	95	48.264	ENSGAGG00000022572	USB1	82	56.054	Gopherus_agassizii
ENSAMXG00000040146	usb1	74	51.570	ENSGGOG00000017147	USB1	84	51.570	Gorilla_gorilla
ENSAMXG00000040146	usb1	83	57.371	ENSHBUG00000009823	usb1	99	54.167	Haplochromis_burtoni
ENSAMXG00000040146	usb1	95	45.296	ENSHGLG00000016078	USB1	82	50.673	Heterocephalus_glaber_female
ENSAMXG00000040146	usb1	95	45.296	ENSHGLG00100005562	USB1	82	50.673	Heterocephalus_glaber_male
ENSAMXG00000040146	usb1	72	62.963	ENSHCOG00000015633	usb1	86	63.229	Hippocampus_comes
ENSAMXG00000040146	usb1	95	69.310	ENSIPUG00000008601	usb1	99	70.000	Ictalurus_punctatus
ENSAMXG00000040146	usb1	75	50.667	ENSSTOG00000007548	USB1	82	50.667	Ictidomys_tridecemlineatus
ENSAMXG00000040146	usb1	95	46.367	ENSJJAG00000021859	Usb1	86	51.082	Jaculus_jaculus
ENSAMXG00000040146	usb1	87	58.397	ENSKMAG00000007200	usb1	90	58.397	Kryptolebias_marmoratus
ENSAMXG00000040146	usb1	82	53.846	ENSLBEG00000008452	usb1	78	53.846	Labrus_bergylta
ENSAMXG00000040146	usb1	71	52.679	ENSLACG00000000105	USB1	86	49.425	Latimeria_chalumnae
ENSAMXG00000040146	usb1	75	60.352	ENSLOCG00000000465	usb1	80	60.352	Lepisosteus_oculatus
ENSAMXG00000040146	usb1	83	42.292	ENSLAFG00000002267	USB1	93	42.688	Loxodonta_africana
ENSAMXG00000040146	usb1	74	51.570	ENSMFAG00000003926	USB1	84	51.570	Macaca_fascicularis
ENSAMXG00000040146	usb1	74	51.570	ENSMMUG00000022669	USB1	84	51.570	Macaca_mulatta
ENSAMXG00000040146	usb1	74	51.121	ENSMNEG00000042487	USB1	84	51.121	Macaca_nemestrina
ENSAMXG00000040146	usb1	74	51.570	ENSMLEG00000028756	USB1	84	51.570	Mandrillus_leucophaeus
ENSAMXG00000040146	usb1	95	57.627	ENSMAMG00000015092	usb1	99	58.993	Mastacembelus_armatus
ENSAMXG00000040146	usb1	83	57.371	ENSMZEG00005010008	usb1	99	54.167	Maylandia_zebra
ENSAMXG00000040146	usb1	95	46.021	ENSMAUG00000007832	Usb1	87	51.082	Mesocricetus_auratus
ENSAMXG00000040146	usb1	75	51.111	ENSMICG00000004900	USB1	85	51.111	Microcebus_murinus
ENSAMXG00000040146	usb1	95	46.713	ENSMOCG00000022647	Usb1	84	52.466	Microtus_ochrogaster
ENSAMXG00000040146	usb1	76	63.043	ENSMMOG00000000490	usb1	89	63.043	Mola_mola
ENSAMXG00000040146	usb1	72	50.917	ENSMODG00000014067	USB1	83	51.570	Monodelphis_domestica
ENSAMXG00000040146	usb1	74	62.054	ENSMALG00000005930	usb1	79	62.054	Monopterus_albus
ENSAMXG00000040146	usb1	95	47.751	MGP_CAROLIEiJ_G0031421	Usb1	99	50.893	Mus_caroli
ENSAMXG00000040146	usb1	95	47.405	ENSMUSG00000031792	Usb1	99	50.000	Mus_musculus
ENSAMXG00000040146	usb1	75	51.556	MGP_PahariEiJ_G0023019	Usb1	100	49.573	Mus_pahari
ENSAMXG00000040146	usb1	95	47.405	MGP_SPRETEiJ_G0032540	Usb1	84	52.000	Mus_spretus
ENSAMXG00000040146	usb1	75	52.889	ENSMPUG00000004684	USB1	80	52.889	Mustela_putorius_furo
ENSAMXG00000040146	usb1	75	52.000	ENSMLUG00000007400	USB1	97	52.000	Myotis_lucifugus
ENSAMXG00000040146	usb1	75	51.556	ENSNGAG00000009703	Usb1	84	51.556	Nannospalax_galili
ENSAMXG00000040146	usb1	83	52.964	ENSNBRG00000008747	usb1	99	60.563	Neolamprologus_brichardi
ENSAMXG00000040146	usb1	69	50.239	ENSNLEG00000003340	USB1	84	50.239	Nomascus_leucogenys
ENSAMXG00000040146	usb1	95	44.291	ENSODEG00000016214	USB1	83	49.776	Octodon_degus
ENSAMXG00000040146	usb1	95	55.208	ENSONIG00000011063	usb1	89	58.167	Oreochromis_niloticus
ENSAMXG00000040146	usb1	74	53.125	ENSOANG00000012118	USB1	94	53.125	Ornithorhynchus_anatinus
ENSAMXG00000040146	usb1	74	63.393	ENSORLG00000012479	usb1	82	63.393	Oryzias_latipes
ENSAMXG00000040146	usb1	74	62.500	ENSORLG00020018671	usb1	82	62.500	Oryzias_latipes_hni
ENSAMXG00000040146	usb1	74	63.393	ENSORLG00015009679	usb1	83	63.393	Oryzias_latipes_hsok
ENSAMXG00000040146	usb1	74	64.286	ENSOMEG00000012930	usb1	99	55.311	Oryzias_melastigma
ENSAMXG00000040146	usb1	75	48.889	ENSOGAG00000003273	USB1	84	48.889	Otolemur_garnettii
ENSAMXG00000040146	usb1	74	52.466	ENSOARG00000001107	USB1	85	52.466	Ovis_aries
ENSAMXG00000040146	usb1	74	51.121	ENSPPAG00000042137	USB1	84	51.121	Pan_paniscus
ENSAMXG00000040146	usb1	75	50.222	ENSPPRG00000024797	USB1	84	50.222	Panthera_pardus
ENSAMXG00000040146	usb1	75	50.222	ENSPTIG00000007506	USB1	84	50.222	Panthera_tigris_altaica
ENSAMXG00000040146	usb1	74	49.327	ENSPTRG00000008172	USB1	99	52.113	Pan_troglodytes
ENSAMXG00000040146	usb1	74	51.570	ENSPANG00000025138	USB1	84	51.570	Papio_anubis
ENSAMXG00000040146	usb1	91	55.596	ENSPKIG00000015109	usb1	93	55.596	Paramormyrops_kingsleyae
ENSAMXG00000040146	usb1	74	44.643	ENSPSIG00000004305	USB1	99	44.643	Pelodiscus_sinensis
ENSAMXG00000040146	usb1	75	57.333	ENSPMGG00000017725	usb1	86	57.333	Periophthalmus_magnuspinnatus
ENSAMXG00000040146	usb1	74	52.018	ENSPEMG00000016183	Usb1	82	52.018	Peromyscus_maniculatus_bairdii
ENSAMXG00000040146	usb1	75	49.345	ENSPMAG00000000462	usb1	96	49.345	Petromyzon_marinus
ENSAMXG00000040146	usb1	95	56.897	ENSPFOG00000011130	usb1	81	65.778	Poecilia_formosa
ENSAMXG00000040146	usb1	95	56.552	ENSPLAG00000009820	usb1	81	65.333	Poecilia_latipinna
ENSAMXG00000040146	usb1	95	56.552	ENSPMEG00000006402	usb1	81	65.778	Poecilia_mexicana
ENSAMXG00000040146	usb1	85	54.753	ENSPREG00000001047	usb1	78	64.948	Poecilia_reticulata
ENSAMXG00000040146	usb1	70	47.867	ENSPPYG00000007401	USB1	84	47.867	Pongo_abelii
ENSAMXG00000040146	usb1	75	50.667	ENSPCOG00000022612	USB1	85	50.667	Propithecus_coquereli
ENSAMXG00000040146	usb1	77	50.644	ENSPVAG00000004613	USB1	89	50.644	Pteropus_vampyrus
ENSAMXG00000040146	usb1	83	57.371	ENSPNYG00000022262	usb1	99	54.167	Pundamilia_nyererei
ENSAMXG00000040146	usb1	95	77.133	ENSPNAG00000011736	usb1	99	77.133	Pygocentrus_nattereri
ENSAMXG00000040146	usb1	95	46.021	ENSRNOG00000013216	Usb1	84	50.667	Rattus_norvegicus
ENSAMXG00000040146	usb1	71	52.113	ENSRBIG00000044466	USB1	99	52.113	Rhinopithecus_bieti
ENSAMXG00000040146	usb1	74	51.570	ENSRROG00000029211	USB1	84	51.570	Rhinopithecus_roxellana
ENSAMXG00000040146	usb1	74	52.018	ENSSBOG00000029362	USB1	84	52.018	Saimiri_boliviensis_boliviensis
ENSAMXG00000040146	usb1	72	47.926	ENSSHAG00000006993	USB1	89	48.444	Sarcophilus_harrisii
ENSAMXG00000040146	usb1	97	60.067	ENSSFOG00015023663	usb1	93	60.067	Scleropages_formosus
ENSAMXG00000040146	usb1	74	60.504	ENSSMAG00000015834	usb1	80	60.504	Scophthalmus_maximus
ENSAMXG00000040146	usb1	74	66.816	ENSSDUG00000002949	usb1	83	66.816	Seriola_dumerili
ENSAMXG00000040146	usb1	74	66.071	ENSSLDG00000014174	usb1	80	66.071	Seriola_lalandi_dorsalis
ENSAMXG00000040146	usb1	71	55.399	ENSSPUG00000006741	USB1	99	55.399	Sphenodon_punctatus
ENSAMXG00000040146	usb1	74	63.839	ENSSPAG00000007484	usb1	79	63.839	Stegastes_partitus
ENSAMXG00000040146	usb1	75	52.000	ENSSSCG00000002807	USB1	84	52.000	Sus_scrofa
ENSAMXG00000040146	usb1	70	56.190	ENSTGUG00000004792	USB1	89	53.744	Taeniopygia_guttata
ENSAMXG00000040146	usb1	95	53.819	ENSTRUG00000021069	usb1	83	62.054	Takifugu_rubripes
ENSAMXG00000040146	usb1	95	50.347	ENSTNIG00000000626	usb1	91	53.629	Tetraodon_nigroviridis
ENSAMXG00000040146	usb1	75	38.222	ENSTBEG00000001507	USB1	97	38.222	Tupaia_belangeri
ENSAMXG00000040146	usb1	75	52.444	ENSUAMG00000016823	USB1	84	52.444	Ursus_americanus
ENSAMXG00000040146	usb1	71	53.052	ENSUMAG00000021369	USB1	99	53.052	Ursus_maritimus
ENSAMXG00000040146	usb1	75	51.770	ENSVVUG00000023700	USB1	87	51.770	Vulpes_vulpes
ENSAMXG00000040146	usb1	73	57.273	ENSXETG00000013795	usb1	90	57.589	Xenopus_tropicalis
ENSAMXG00000040146	usb1	74	64.444	ENSXMAG00000024687	usb1	66	64.444	Xiphophorus_maculatus