EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000040460 (Gene tree)
Gene ID: 103024663
Gene Symbol: zgc:101559
Alias: -
Full Name: ras-related protein Rab-33B-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 4115 bases
Position: chrAPWO02000147.1:630664-634778
Accession: 103024663
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000053230	MMR_HSR1	PF01926.23	2.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000045019	-	2526	XM_007251699	ENSAMXP00000053230	243 (aa)	XP_007251761	UPI000BBDBE39

Gene Model

Click here to download ENSAMXG00000040460's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex04140	Autophagy - animal	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000040460's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000040460	zgc:101559	79	35.176	ENSAMXG00000036330	RAB38	91	35.176
ENSAMXG00000040460	zgc:101559	80	37.745	ENSAMXG00000002254	-	97	37.745
ENSAMXG00000040460	zgc:101559	70	41.520	ENSAMXG00000043717	rab5c	78	40.449
ENSAMXG00000040460	zgc:101559	63	36.943	ENSAMXG00000026059	RAB9A	78	36.943
ENSAMXG00000040460	zgc:101559	60	34.694	ENSAMXG00000029130	-	78	34.694
ENSAMXG00000040460	zgc:101559	80	40.777	ENSAMXG00000003717	rab39bb	96	40.777
ENSAMXG00000040460	zgc:101559	63	37.580	ENSAMXG00000026476	rab9b	70	37.580
ENSAMXG00000040460	zgc:101559	69	40.476	ENSAMXG00000013054	rab22a	83	40.476
ENSAMXG00000040460	zgc:101559	70	41.520	ENSAMXG00000035919	rab5ab	76	41.520
ENSAMXG00000040460	zgc:101559	71	39.306	ENSAMXG00000003155	rab11a	80	39.306
ENSAMXG00000040460	zgc:101559	61	40.940	ENSAMXG00000042419	rab3c	68	40.940
ENSAMXG00000040460	zgc:101559	79	33.166	ENSAMXG00000040611	rabl2	87	33.166
ENSAMXG00000040460	zgc:101559	78	56.250	ENSAMXG00000037428	-	84	58.989
ENSAMXG00000040460	zgc:101559	64	37.107	ENSAMXG00000025889	RAB9A	78	37.107
ENSAMXG00000040460	zgc:101559	74	40.984	ENSAMXG00000031957	zgc:100918	84	40.984
ENSAMXG00000040460	zgc:101559	80	36.893	ENSAMXG00000029712	rab25b	94	36.893
ENSAMXG00000040460	zgc:101559	69	47.024	ENSAMXG00000032564	rab1ab	81	47.024
ENSAMXG00000040460	zgc:101559	71	32.370	ENSAMXG00000033764	si:ch73-116o1.2	81	32.370
ENSAMXG00000040460	zgc:101559	70	42.197	ENSAMXG00000004882	rab12	69	41.714
ENSAMXG00000040460	zgc:101559	61	38.926	ENSAMXG00000004630	rab6ba	78	38.926
ENSAMXG00000040460	zgc:101559	70	41.520	ENSAMXG00000036179	rab5aa	77	41.520
ENSAMXG00000040460	zgc:101559	69	45.833	ENSAMXG00000034850	-	81	45.833
ENSAMXG00000040460	zgc:101559	60	42.466	ENSAMXG00000042073	rab18b	71	42.466
ENSAMXG00000040460	zgc:101559	65	39.623	ENSAMXG00000024632	rab11al	76	39.623
ENSAMXG00000040460	zgc:101559	68	31.844	ENSAMXG00000035770	rasl11a	69	31.844
ENSAMXG00000040460	zgc:101559	61	41.611	ENSAMXG00000033216	rab41	75	41.611
ENSAMXG00000040460	zgc:101559	67	42.073	ENSAMXG00000030712	rab13	79	42.073
ENSAMXG00000040460	zgc:101559	80	35.681	ENSAMXG00000040126	-	75	35.681
ENSAMXG00000040460	zgc:101559	53	35.659	ENSAMXG00000003504	rab20	50	35.659
ENSAMXG00000040460	zgc:101559	71	33.526	ENSAMXG00000010919	mras	88	31.720
ENSAMXG00000040460	zgc:101559	61	36.667	ENSAMXG00000033390	rap1aa	76	36.667
ENSAMXG00000040460	zgc:101559	59	35.135	ENSAMXG00000033069	si:cabz01085950.1	70	35.135
ENSAMXG00000040460	zgc:101559	71	40.462	ENSAMXG00000042655	rab11bb	78	40.462
ENSAMXG00000040460	zgc:101559	71	39.884	ENSAMXG00000037623	-	78	39.884
ENSAMXG00000040460	zgc:101559	81	31.308	ENSAMXG00000042814	rasl11b	80	31.308
ENSAMXG00000040460	zgc:101559	63	42.208	ENSAMXG00000036772	rab2a	72	42.208
ENSAMXG00000040460	zgc:101559	61	38.411	ENSAMXG00000017266	rab36	57	38.411
ENSAMXG00000040460	zgc:101559	60	35.333	ENSAMXG00000041488	dnajc27	54	35.333
ENSAMXG00000040460	zgc:101559	79	41.327	ENSAMXG00000039865	rab35b	96	41.327
ENSAMXG00000040460	zgc:101559	67	40.719	ENSAMXG00000032027	rab7a	79	40.719
ENSAMXG00000040460	zgc:101559	69	44.643	ENSAMXG00000039486	zgc:171927	78	44.643
ENSAMXG00000040460	zgc:101559	73	35.955	ENSAMXG00000033907	hrasb	92	35.955
ENSAMXG00000040460	zgc:101559	74	39.227	ENSAMXG00000040879	rab25a	81	39.227
ENSAMXG00000040460	zgc:101559	80	35.514	ENSAMXG00000009640	rab14	95	35.514
ENSAMXG00000040460	zgc:101559	70	47.222	ENSAMXG00000009935	rab30	71	47.222
ENSAMXG00000040460	zgc:101559	80	35.849	ENSAMXG00000043951	rab15	97	35.849
ENSAMXG00000040460	zgc:101559	72	34.659	ENSAMXG00000012327	nras	96	34.659
ENSAMXG00000040460	zgc:101559	72	41.573	ENSAMXG00000039737	RAB19	79	41.573
ENSAMXG00000040460	zgc:101559	75	46.995	ENSAMXG00000038243	si:dkey-16l2.16	81	56.311
ENSAMXG00000040460	zgc:101559	80	34.466	ENSAMXG00000032663	si:dkey-13a21.4	93	34.466
ENSAMXG00000040460	zgc:101559	69	46.429	ENSAMXG00000003547	rab1ba	73	46.429
ENSAMXG00000040460	zgc:101559	60	43.919	ENSAMXG00000033470	RAB15	69	43.919
ENSAMXG00000040460	zgc:101559	73	66.845	ENSAMXG00000040286	rab33ba	78	66.845
ENSAMXG00000040460	zgc:101559	61	42.282	ENSAMXG00000032547	rab6a	71	40.940
ENSAMXG00000040460	zgc:101559	68	34.940	ENSAMXG00000014960	rab23	71	35.393
ENSAMXG00000040460	zgc:101559	74	42.308	ENSAMXG00000041657	rab39ba	85	42.308
ENSAMXG00000040460	zgc:101559	70	41.520	ENSAMXG00000037267	-	79	41.520
ENSAMXG00000040460	zgc:101559	79	42.857	ENSAMXG00000040604	-	96	42.857
ENSAMXG00000040460	zgc:101559	74	36.313	ENSAMXG00000035885	hrasa	92	36.517
ENSAMXG00000040460	zgc:101559	73	35.955	ENSAMXG00000017217	kras	90	35.955
ENSAMXG00000040460	zgc:101559	80	37.379	ENSAMXG00000032729	rab42a	96	37.379
ENSAMXG00000040460	zgc:101559	54	35.294	ENSAMXG00000034227	rab32b	65	35.294

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000040460	zgc:101559	94	74.059	ENSAPOG00000007503	zgc:101559	100	74.059	Acanthochromis_polyacanthus
ENSAMXG00000040460	zgc:101559	90	74.779	ENSACIG00000021459	zgc:101559	97	74.779	Amphilophus_citrinellus
ENSAMXG00000040460	zgc:101559	94	74.477	ENSAOCG00000024675	zgc:101559	100	74.477	Amphiprion_ocellaris
ENSAMXG00000040460	zgc:101559	94	74.477	ENSAPEG00000005176	zgc:101559	100	74.477	Amphiprion_percula
ENSAMXG00000040460	zgc:101559	94	72.222	ENSATEG00000007761	zgc:101559	100	72.222	Anabas_testudineus
ENSAMXG00000040460	zgc:101559	94	74.790	ENSACLG00000027006	zgc:101559	99	74.790	Astatotilapia_calliptera
ENSAMXG00000040460	zgc:101559	91	73.246	ENSCSEG00000006243	zgc:101559	97	73.246	Cynoglossus_semilaevis
ENSAMXG00000040460	zgc:101559	94	72.766	ENSCVAG00000019227	zgc:101559	100	72.766	Cyprinodon_variegatus
ENSAMXG00000040460	zgc:101559	94	78.970	ENSDARG00000003257	zgc:101559	100	78.970	Danio_rerio
ENSAMXG00000040460	zgc:101559	94	73.191	ENSFHEG00000011483	zgc:101559	100	73.191	Fundulus_heteroclitus
ENSAMXG00000040460	zgc:101559	86	78.774	ENSGMOG00000011665	zgc:101559	100	78.774	Gadus_morhua
ENSAMXG00000040460	zgc:101559	94	73.707	ENSGAFG00000021202	zgc:101559	99	73.707	Gambusia_affinis
ENSAMXG00000040460	zgc:101559	91	71.749	ENSGACG00000001725	zgc:101559	96	71.749	Gasterosteus_aculeatus
ENSAMXG00000040460	zgc:101559	88	77.828	ENSHBUG00000007827	zgc:101559	92	77.828	Haplochromis_burtoni
ENSAMXG00000040460	zgc:101559	87	72.811	ENSHCOG00000009133	zgc:101559	92	72.646	Hippocampus_comes
ENSAMXG00000040460	zgc:101559	94	83.043	ENSIPUG00000022394	zgc:101559	100	83.043	Ictalurus_punctatus
ENSAMXG00000040460	zgc:101559	85	77.315	ENSKMAG00000002862	zgc:101559	92	77.315	Kryptolebias_marmoratus
ENSAMXG00000040460	zgc:101559	94	75.862	ENSLBEG00000025798	zgc:101559	99	75.862	Labrus_bergylta
ENSAMXG00000040460	zgc:101559	81	70.647	ENSLACG00000011557	zgc:101559	87	70.647	Latimeria_chalumnae
ENSAMXG00000040460	zgc:101559	99	72.245	ENSLOCG00000005904	zgc:101559	100	72.245	Lepisosteus_oculatus
ENSAMXG00000040460	zgc:101559	94	72.650	ENSMAMG00000017431	zgc:101559	100	72.650	Mastacembelus_armatus
ENSAMXG00000040460	zgc:101559	88	77.828	ENSMZEG00005021778	zgc:101559	92	77.828	Maylandia_zebra
ENSAMXG00000040460	zgc:101559	87	73.953	ENSMMOG00000019779	zgc:101559	92	73.953	Mola_mola
ENSAMXG00000040460	zgc:101559	94	71.983	ENSMALG00000003712	zgc:101559	99	71.983	Monopterus_albus
ENSAMXG00000040460	zgc:101559	94	73.640	ENSNBRG00000002684	zgc:101559	100	73.640	Neolamprologus_brichardi
ENSAMXG00000040460	zgc:101559	88	77.828	ENSONIG00000006715	-	92	77.828	Oreochromis_niloticus
ENSAMXG00000040460	zgc:101559	94	73.932	ENSORLG00000030642	zgc:101559	100	73.932	Oryzias_latipes
ENSAMXG00000040460	zgc:101559	94	74.359	ENSORLG00020012685	zgc:101559	100	74.359	Oryzias_latipes_hni
ENSAMXG00000040460	zgc:101559	94	73.276	ENSORLG00015016047	zgc:101559	99	73.276	Oryzias_latipes_hsok
ENSAMXG00000040460	zgc:101559	94	74.359	ENSOMEG00000013128	zgc:101559	100	74.359	Oryzias_melastigma
ENSAMXG00000040460	zgc:101559	94	71.915	ENSPKIG00000013397	zgc:101559	99	71.915	Paramormyrops_kingsleyae
ENSAMXG00000040460	zgc:101559	94	73.418	ENSPFOG00000009101	-	99	73.418	Poecilia_formosa
ENSAMXG00000040460	zgc:101559	94	73.418	ENSPLAG00000020627	zgc:101559	99	73.418	Poecilia_latipinna
ENSAMXG00000040460	zgc:101559	94	74.249	ENSPMEG00000010152	zgc:101559	99	74.249	Poecilia_mexicana
ENSAMXG00000040460	zgc:101559	94	72.961	ENSPREG00000007017	zgc:101559	99	72.961	Poecilia_reticulata
ENSAMXG00000040460	zgc:101559	88	77.828	ENSPNYG00000012922	zgc:101559	92	77.828	Pundamilia_nyererei
ENSAMXG00000040460	zgc:101559	94	91.703	ENSPNAG00000017856	zgc:101559	100	91.703	Pygocentrus_nattereri
ENSAMXG00000040460	zgc:101559	93	72.961	ENSSFOG00015006175	zgc:101559	100	72.961	Scleropages_formosus
ENSAMXG00000040460	zgc:101559	93	70.085	ENSSMAG00000002229	zgc:101559	99	70.085	Scophthalmus_maximus
ENSAMXG00000040460	zgc:101559	94	74.468	ENSSDUG00000008151	zgc:101559	100	74.468	Seriola_dumerili
ENSAMXG00000040460	zgc:101559	94	74.043	ENSSLDG00000019214	zgc:101559	100	74.043	Seriola_lalandi_dorsalis
ENSAMXG00000040460	zgc:101559	94	74.059	ENSSPAG00000006404	zgc:101559	100	74.059	Stegastes_partitus
ENSAMXG00000040460	zgc:101559	94	71.064	ENSTRUG00000009903	zgc:101559	100	71.064	Takifugu_rubripes
ENSAMXG00000040460	zgc:101559	86	74.762	ENSTNIG00000015000	zgc:101559	89	74.762	Tetraodon_nigroviridis
ENSAMXG00000040460	zgc:101559	94	73.707	ENSXCOG00000018683	zgc:101559	99	73.707	Xiphophorus_couchianus
ENSAMXG00000040460	zgc:101559	94	74.569	ENSXMAG00000011171	zgc:101559	99	74.569	Xiphophorus_maculatus