EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000040688 (Gene tree)
Gene ID: 103021430
Gene Symbol: -
Alias: -
Full Name: uncharacterized LOC103021430
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 16389 bases
Position: chr13:19740834-19757222
Accession: 103021430
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000047979	MMR_HSR1	PF01926.23	1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000047478	-	2609	XM_007231317	ENSAMXP00000047979	688 (aa)	XP_007231379	UPI000BBD7CDD

Gene Model

Click here to download ENSAMXG00000040688's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000040688's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000040688	-	58	36.058	ENSAMXG00000032951	-	81	35.577
ENSAMXG00000040688	-	54	33.158	ENSAMXG00000031309	-	73	33.158
ENSAMXG00000040688	-	56	37.500	ENSAMXG00000037798	-	60	37.500
ENSAMXG00000040688	-	58	32.512	ENSAMXG00000006341	-	78	32.653
ENSAMXG00000040688	-	56	34.171	ENSAMXG00000041888	-	94	34.010
ENSAMXG00000040688	-	58	33.168	ENSAMXG00000040708	-	74	33.168
ENSAMXG00000040688	-	61	34.112	ENSAMXG00000030159	-	61	34.222
ENSAMXG00000040688	-	57	31.472	ENSAMXG00000035925	-	88	32.178
ENSAMXG00000040688	-	58	31.220	ENSAMXG00000041240	-	83	31.220
ENSAMXG00000040688	-	52	40.625	ENSAMXG00000026085	-	87	41.026
ENSAMXG00000040688	-	54	31.481	ENSAMXG00000038516	-	69	31.481
ENSAMXG00000040688	-	58	36.058	ENSAMXG00000035963	-	82	35.577
ENSAMXG00000040688	-	50	31.325	ENSAMXG00000042238	-	52	32.948
ENSAMXG00000040688	-	58	31.776	ENSAMXG00000024930	-	70	31.776
ENSAMXG00000040688	-	57	33.166	ENSAMXG00000013799	-	77	33.184
ENSAMXG00000040688	-	65	34.673	ENSAMXG00000038070	-	93	38.333
ENSAMXG00000040688	-	53	31.667	ENSAMXG00000037808	-	68	31.667
ENSAMXG00000040688	-	60	31.081	ENSAMXG00000037101	zgc:113625	79	31.081
ENSAMXG00000040688	-	56	35.714	ENSAMXG00000042848	-	91	35.714
ENSAMXG00000040688	-	56	32.317	ENSAMXG00000036435	-	92	32.704
ENSAMXG00000040688	-	50	36.111	ENSAMXG00000043950	-	84	36.471
ENSAMXG00000040688	-	62	36.000	ENSAMXG00000030501	-	70	35.586
ENSAMXG00000040688	-	57	34.359	ENSAMXG00000032601	zgc:165583	63	34.359
ENSAMXG00000040688	-	58	31.633	ENSAMXG00000031086	-	96	31.980
ENSAMXG00000040688	-	55	35.638	ENSAMXG00000043471	-	67	34.222
ENSAMXG00000040688	-	54	31.282	ENSAMXG00000042243	-	85	31.282
ENSAMXG00000040688	-	64	32.692	ENSAMXG00000033190	-	80	33.005
ENSAMXG00000040688	-	51	32.544	ENSAMXG00000041745	-	88	32.530
ENSAMXG00000040688	-	58	30.052	ENSAMXG00000006064	-	72	30.208
ENSAMXG00000040688	-	57	32.000	ENSAMXG00000013452	-	61	31.481
ENSAMXG00000040688	-	60	35.377	ENSAMXG00000013450	-	61	35.377
ENSAMXG00000040688	-	51	37.500	ENSAMXG00000031181	-	62	39.264
ENSAMXG00000040688	-	67	36.607	ENSAMXG00000021387	-	74	36.607
ENSAMXG00000040688	-	59	34.826	ENSAMXG00000043776	-	76	35.354
ENSAMXG00000040688	-	63	35.160	ENSAMXG00000037741	-	93	35.160
ENSAMXG00000040688	-	54	35.165	ENSAMXG00000026503	-	82	35.165
ENSAMXG00000040688	-	60	34.234	ENSAMXG00000037647	-	90	34.343
ENSAMXG00000040688	-	57	43.704	ENSAMXG00000002562	-	94	47.368
ENSAMXG00000040688	-	52	35.326	ENSAMXG00000032489	-	68	35.519
ENSAMXG00000040688	-	59	35.071	ENSAMXG00000025201	si:dkey-125e8.4	63	35.071
ENSAMXG00000040688	-	61	35.023	ENSAMXG00000035792	-	77	35.023
ENSAMXG00000040688	-	61	34.579	ENSAMXG00000043838	-	52	36.041
ENSAMXG00000040688	-	60	34.722	ENSAMXG00000038358	-	60	35.025
ENSAMXG00000040688	-	65	34.746	ENSAMXG00000032276	-	54	37.264
ENSAMXG00000040688	-	58	34.483	ENSAMXG00000030472	-	85	34.483
ENSAMXG00000040688	-	60	32.870	ENSAMXG00000041141	-	56	32.870
ENSAMXG00000040688	-	59	33.921	ENSAMXG00000041148	-	84	34.361
ENSAMXG00000040688	-	60	32.020	ENSAMXG00000041969	si:ch1073-185p12.2	61	32.620
ENSAMXG00000040688	-	60	37.438	ENSAMXG00000038930	-	70	37.438
ENSAMXG00000040688	-	64	35.897	ENSAMXG00000007079	-	96	35.567
ENSAMXG00000040688	-	63	32.203	ENSAMXG00000035878	-	94	32.203
ENSAMXG00000040688	-	61	36.181	ENSAMXG00000032368	-	90	33.803
ENSAMXG00000040688	-	61	32.227	ENSAMXG00000029731	-	79	32.432
ENSAMXG00000040688	-	52	35.593	ENSAMXG00000038335	-	79	35.593
ENSAMXG00000040688	-	54	32.995	ENSAMXG00000033160	-	86	32.995
ENSAMXG00000040688	-	64	37.186	ENSAMXG00000032381	-	67	37.374
ENSAMXG00000040688	-	65	39.524	ENSAMXG00000030744	-	88	38.614
ENSAMXG00000040688	-	58	30.052	ENSAMXG00000039735	-	70	30.052
ENSAMXG00000040688	-	56	35.052	ENSAMXG00000035326	-	60	35.052
ENSAMXG00000040688	-	62	33.171	ENSAMXG00000038580	-	81	34.021
ENSAMXG00000040688	-	59	34.419	ENSAMXG00000021622	-	90	34.389
ENSAMXG00000040688	-	71	32.212	ENSAMXG00000031962	-	88	33.945
ENSAMXG00000040688	-	59	31.343	ENSAMXG00000040298	-	89	31.000
ENSAMXG00000040688	-	65	32.558	ENSAMXG00000030783	-	73	32.558
ENSAMXG00000040688	-	60	34.928	ENSAMXG00000015575	-	79	34.928
ENSAMXG00000040688	-	51	36.646	ENSAMXG00000039685	-	80	37.107
ENSAMXG00000040688	-	55	35.450	ENSAMXG00000036317	-	85	35.450
ENSAMXG00000040688	-	62	37.313	ENSAMXG00000019109	-	94	37.563
ENSAMXG00000040688	-	66	31.868	ENSAMXG00000031520	-	80	31.752
ENSAMXG00000040688	-	52	35.593	ENSAMXG00000033886	-	78	35.593
ENSAMXG00000040688	-	63	33.500	ENSAMXG00000036745	-	90	32.995
ENSAMXG00000040688	-	55	31.443	ENSAMXG00000036554	-	79	30.660
ENSAMXG00000040688	-	61	32.212	ENSAMXG00000038457	-	88	35.135
ENSAMXG00000040688	-	58	35.678	ENSAMXG00000035357	-	66	35.533
ENSAMXG00000040688	-	68	32.328	ENSAMXG00000042278	-	69	32.203
ENSAMXG00000040688	-	58	32.990	ENSAMXG00000030926	-	58	33.871
ENSAMXG00000040688	-	56	37.186	ENSAMXG00000029396	-	67	36.923
ENSAMXG00000040688	-	58	31.892	ENSAMXG00000035161	-	60	31.892
ENSAMXG00000040688	-	66	32.579	ENSAMXG00000030288	-	69	32.110
ENSAMXG00000040688	-	61	30.516	ENSAMXG00000012113	-	73	30.516
ENSAMXG00000040688	-	68	32.195	ENSAMXG00000035621	-	90	31.579
ENSAMXG00000040688	-	54	31.472	ENSAMXG00000031923	-	73	31.472

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000040688	-	76	52.500	ENSCSEG00000013762	-	63	44.113	Cynoglossus_semilaevis
ENSAMXG00000040688	-	71	39.155	ENSIPUG00000004642	si:dkeyp-69e1.8	55	47.236	Ictalurus_punctatus
ENSAMXG00000040688	-	60	50.490	ENSMMOG00000008509	-	76	51.256	Mola_mola
ENSAMXG00000040688	-	98	49.505	ENSORLG00000003769	-	70	37.302	Oryzias_latipes
ENSAMXG00000040688	-	83	49.505	ENSORLG00020009935	-	70	37.120	Oryzias_latipes_hni
ENSAMXG00000040688	-	83	41.279	ENSPFOG00000013403	-	81	53.000	Poecilia_formosa
ENSAMXG00000040688	-	79	44.874	ENSPMEG00000008621	-	61	45.470	Poecilia_mexicana
ENSAMXG00000040688	-	99	50.000	ENSPREG00000013750	-	62	44.500	Poecilia_reticulata
ENSAMXG00000040688	-	100	66.713	ENSPNAG00000000165	-	92	66.713	Pygocentrus_nattereri
ENSAMXG00000040688	-	58	52.764	ENSXCOG00000013594	-	86	52.764	Xiphophorus_couchianus
ENSAMXG00000040688	-	63	52.764	ENSXMAG00000025089	-	90	52.764	Xiphophorus_maculatus