EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000040915 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 6242 bases
Position: chrAPWO02000046.1:1294687-1300928
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000054714	RVT_1	PF00078.27	3e-29	1	1
ENSAMXP00000044839	RVT_1	PF00078.27	7.1e-29	1	1
ENSAMXP00000053002	RVT_1	PF00078.27	9.2e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000049164	-	4640	-	ENSAMXP00000044839	1390 (aa)	-	-
ENSAMXT00000031980	-	5987	-	ENSAMXP00000053002	1839 (aa)	-	-
ENSAMXT00000038715	-	2938	-	ENSAMXP00000054714	822 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000040915's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000040915's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000040915	-	59	53.388	ENSAMXG00000031305	-	93	60.596
ENSAMXG00000040915	-	58	58.308	ENSAMXG00000042521	-	84	58.308
ENSAMXG00000040915	-	91	48.202	ENSAMXG00000033138	-	87	56.220
ENSAMXG00000040915	-	83	51.012	ENSAMXG00000042699	-	78	55.006
ENSAMXG00000040915	-	91	48.100	ENSAMXG00000040104	-	76	57.720
ENSAMXG00000040915	-	55	35.000	ENSAMXG00000029230	-	63	38.500
ENSAMXG00000040915	-	73	45.227	ENSAMXG00000030934	-	83	48.732
ENSAMXG00000040915	-	72	44.866	ENSAMXG00000038544	-	81	48.352
ENSAMXG00000040915	-	90	49.141	ENSAMXG00000040149	-	84	59.189
ENSAMXG00000040915	-	70	49.831	ENSAMXG00000029689	-	77	50.697
ENSAMXG00000040915	-	91	51.931	ENSAMXG00000040695	-	92	63.357
ENSAMXG00000040915	-	72	49.588	ENSAMXG00000036897	-	87	47.264
ENSAMXG00000040915	-	73	51.639	ENSAMXG00000043875	-	86	52.961
ENSAMXG00000040915	-	90	50.531	ENSAMXG00000036523	-	80	58.391
ENSAMXG00000040915	-	78	48.869	ENSAMXG00000033831	-	83	49.398
ENSAMXG00000040915	-	95	51.847	ENSAMXG00000041694	-	98	56.250

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000040915	-	90	48.728	ENSDARG00000111789	BX571665.1	90	57.245	Danio_rerio
ENSAMXG00000040915	-	90	48.996	ENSDARG00000115891	CR533578.1	90	57.820	Danio_rerio
ENSAMXG00000040915	-	90	49.130	ENSDARG00000114395	CU929458.1	90	57.583	Danio_rerio
ENSAMXG00000040915	-	81	40.000	ENSKMAG00000007139	-	62	45.969	Kryptolebias_marmoratus
ENSAMXG00000040915	-	90	37.885	ENSORLG00000027396	-	96	44.419	Oryzias_latipes
ENSAMXG00000040915	-	84	40.652	ENSORLG00020019993	-	83	47.350	Oryzias_latipes_hni
ENSAMXG00000040915	-	81	40.703	ENSORLG00015015202	-	69	47.156	Oryzias_latipes_hsok
ENSAMXG00000040915	-	91	40.409	ENSORLG00015020336	-	92	45.917	Oryzias_latipes_hsok