EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000040976 (Gene tree)
Gene ID: 103022866
Gene Symbol: srfbp1
Alias: fc54c06|wu:fc54c06|zgc:56062
Full Name: serum response factor binding protein 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 6120 bases
Position: chr23:20138305-20144424
Accession: 103022866
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000040970	BUD22	PF09073.10	7.1e-10	1	1
ENSAMXP00000043689	BUD22	PF09073.10	7.1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000031281	-	2389	XM_007249414	ENSAMXP00000043689	690 (aa)	XP_007249476	UPI000BBDE1DC
ENSAMXT00000057930	-	4581	XM_022683162	ENSAMXP00000040970	690 (aa)	XP_022538883	UPI000BBDE1DC

Gene Model

Click here to download ENSAMXG00000040976's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000040976's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000040976	srfbp1	92	50.000	ENSG00000151304	SRFBP1	78	50.000	Homo_sapiens
ENSAMXG00000040976	srfbp1	81	53.383	ENSAPOG00000021469	-	85	56.198	Acanthochromis_polyacanthus
ENSAMXG00000040976	srfbp1	90	46.957	ENSAMEG00000018050	SRFBP1	81	46.957	Ailuropoda_melanoleuca
ENSAMXG00000040976	srfbp1	62	70.000	ENSACIG00000019127	-	88	46.789	Amphilophus_citrinellus
ENSAMXG00000040976	srfbp1	77	52.672	ENSAOCG00000002182	-	84	55.372	Amphiprion_ocellaris
ENSAMXG00000040976	srfbp1	77	52.632	ENSAPEG00000003041	-	78	55.372	Amphiprion_percula
ENSAMXG00000040976	srfbp1	65	50.382	ENSACAG00000003779	SRFBP1	72	52.000	Anolis_carolinensis
ENSAMXG00000040976	srfbp1	92	50.388	ENSCJAG00000017177	SRFBP1	83	50.388	Callithrix_jacchus
ENSAMXG00000040976	srfbp1	92	49.612	ENSTSYG00000008630	-	82	49.612	Carlito_syrichta
ENSAMXG00000040976	srfbp1	65	50.388	ENSCCAG00000032237	-	70	50.388	Cebus_capucinus
ENSAMXG00000040976	srfbp1	92	50.781	ENSCATG00000040904	SRFBP1	84	50.781	Cercocebus_atys
ENSAMXG00000040976	srfbp1	92	46.825	ENSCLAG00000003630	SRFBP1	78	46.825	Chinchilla_lanigera
ENSAMXG00000040976	srfbp1	92	51.562	ENSCSAG00000014636	SRFBP1	84	51.562	Chlorocebus_sabaeus
ENSAMXG00000040976	srfbp1	92	50.794	ENSCANG00000041298	SRFBP1	83	50.794	Colobus_angolensis_palliatus
ENSAMXG00000040976	srfbp1	91	53.175	ENSCGRG00001000718	Srfbp1	87	53.175	Cricetulus_griseus_chok1gshd
ENSAMXG00000040976	srfbp1	88	50.877	ENSCGRG00000010837	Srfbp1	90	50.877	Cricetulus_griseus_crigri
ENSAMXG00000040976	srfbp1	58	78.947	ENSCSEG00000011789	-	97	54.464	Cynoglossus_semilaevis
ENSAMXG00000040976	srfbp1	51	58.462	ENSCVAG00000013010	-	72	60.163	Cyprinodon_variegatus
ENSAMXG00000040976	srfbp1	92	50.394	ENSEASG00005012421	SRFBP1	80	50.394	Equus_asinus_asinus
ENSAMXG00000040976	srfbp1	92	50.394	ENSECAG00000015330	SRFBP1	83	50.394	Equus_caballus
ENSAMXG00000040976	srfbp1	91	40.945	ENSEEUG00000011514	SRFBP1	91	40.945	Erinaceus_europaeus
ENSAMXG00000040976	srfbp1	77	73.810	ENSELUG00000018381	-	97	61.224	Esox_lucius
ENSAMXG00000040976	srfbp1	61	42.982	ENSFALG00000007595	SRFBP1	71	42.982	Ficedula_albicollis
ENSAMXG00000040976	srfbp1	91	50.794	ENSFDAG00000005102	SRFBP1	76	50.794	Fukomys_damarensis
ENSAMXG00000040976	srfbp1	53	58.696	ENSGMOG00000012729	-	65	55.932	Gadus_morhua
ENSAMXG00000040976	srfbp1	53	48.175	ENSGALG00000005316	SRFBP1	73	48.837	Gallus_gallus
ENSAMXG00000040976	srfbp1	64	46.610	ENSGAGG00000024915	SRFBP1	70	47.321	Gopherus_agassizii
ENSAMXG00000040976	srfbp1	92	50.000	ENSGGOG00000007725	SRFBP1	90	50.000	Gorilla_gorilla
ENSAMXG00000040976	srfbp1	66	51.145	ENSSTOG00000029184	SRFBP1	70	51.587	Ictidomys_tridecemlineatus
ENSAMXG00000040976	srfbp1	78	48.035	ENSLBEG00000013924	-	79	53.279	Labrus_bergylta
ENSAMXG00000040976	srfbp1	92	51.181	ENSLAFG00000015303	SRFBP1	79	40.500	Loxodonta_africana
ENSAMXG00000040976	srfbp1	92	50.781	ENSMFAG00000031263	SRFBP1	84	50.781	Macaca_fascicularis
ENSAMXG00000040976	srfbp1	92	50.781	ENSMMUG00000021009	SRFBP1	84	50.781	Macaca_mulatta
ENSAMXG00000040976	srfbp1	92	51.562	ENSMNEG00000040870	SRFBP1	84	51.562	Macaca_nemestrina
ENSAMXG00000040976	srfbp1	63	57.851	ENSMAMG00000004632	-	63	57.851	Mastacembelus_armatus
ENSAMXG00000040976	srfbp1	89	50.427	ENSMAUG00000009431	Srfbp1	81	50.427	Mesocricetus_auratus
ENSAMXG00000040976	srfbp1	78	48.855	ENSMICG00000042923	SRFBP1	82	50.400	Microcebus_murinus
ENSAMXG00000040976	srfbp1	63	52.419	ENSMODG00000013487	-	71	52.419	Monodelphis_domestica
ENSAMXG00000040976	srfbp1	88	48.246	ENSMPUG00000013031	SRFBP1	84	48.246	Mustela_putorius_furo
ENSAMXG00000040976	srfbp1	91	48.062	ENSMLUG00000009984	SRFBP1	79	49.593	Myotis_lucifugus
ENSAMXG00000040976	srfbp1	90	48.000	ENSNGAG00000013229	Srfbp1	82	48.000	Nannospalax_galili
ENSAMXG00000040976	srfbp1	68	54.930	ENSNBRG00000001146	-	71	57.600	Neolamprologus_brichardi
ENSAMXG00000040976	srfbp1	92	51.587	ENSNLEG00000011949	SRFBP1	78	51.587	Nomascus_leucogenys
ENSAMXG00000040976	srfbp1	88	45.614	ENSODEG00000007258	SRFBP1	72	45.614	Octodon_degus
ENSAMXG00000040976	srfbp1	70	47.297	ENSORLG00015000238	-	83	52.800	Oryzias_latipes_hsok
ENSAMXG00000040976	srfbp1	91	46.565	ENSOGAG00000032423	SRFBP1	82	47.619	Otolemur_garnettii
ENSAMXG00000040976	srfbp1	92	50.781	ENSPPAG00000035848	SRFBP1	78	50.781	Pan_paniscus
ENSAMXG00000040976	srfbp1	55	49.600	ENSPPRG00000001695	SRFBP1	79	49.600	Panthera_pardus
ENSAMXG00000040976	srfbp1	55	49.600	ENSPTIG00000012305	SRFBP1	79	49.600	Panthera_tigris_altaica
ENSAMXG00000040976	srfbp1	92	51.562	ENSPTRG00000017172	SRFBP1	78	51.562	Pan_troglodytes
ENSAMXG00000040976	srfbp1	92	50.781	ENSPANG00000003799	SRFBP1	84	50.781	Papio_anubis
ENSAMXG00000040976	srfbp1	69	48.855	ENSPSIG00000010650	SRFBP1	71	49.600	Pelodiscus_sinensis
ENSAMXG00000040976	srfbp1	67	56.557	ENSPREG00000017248	-	76	56.557	Poecilia_reticulata
ENSAMXG00000040976	srfbp1	92	50.794	ENSPPYG00000015714	SRFBP1	78	50.794	Pongo_abelii
ENSAMXG00000040976	srfbp1	91	49.618	ENSPCOG00000027331	SRFBP1	83	51.200	Propithecus_coquereli
ENSAMXG00000040976	srfbp1	57	50.538	ENSRBIG00000031064	SRFBP1	73	50.538	Rhinopithecus_bieti
ENSAMXG00000040976	srfbp1	92	50.781	ENSRROG00000026932	SRFBP1	78	50.781	Rhinopithecus_roxellana
ENSAMXG00000040976	srfbp1	92	50.388	ENSSBOG00000015464	-	83	50.388	Saimiri_boliviensis_boliviensis
ENSAMXG00000040976	srfbp1	64	50.000	ENSSHAG00000016003	SRFBP1	85	39.560	Sarcophilus_harrisii
ENSAMXG00000040976	srfbp1	53	58.537	ENSSDUG00000001828	-	71	58.537	Seriola_dumerili
ENSAMXG00000040976	srfbp1	73	49.275	ENSSARG00000010669	SRFBP1	82	52.419	Sorex_araneus
ENSAMXG00000040976	srfbp1	73	39.815	ENSSPUG00000009204	SRFBP1	70	49.573	Sphenodon_punctatus
ENSAMXG00000040976	srfbp1	92	50.794	ENSSSCG00000022656	SRFBP1	79	50.794	Sus_scrofa
ENSAMXG00000040976	srfbp1	68	52.899	ENSTNIG00000009267	-	72	56.557	Tetraodon_nigroviridis
ENSAMXG00000040976	srfbp1	88	48.246	ENSUAMG00000016707	SRFBP1	84	48.246	Ursus_americanus
ENSAMXG00000040976	srfbp1	68	49.573	ENSUMAG00000018340	SRFBP1	70	49.573	Ursus_maritimus
ENSAMXG00000040976	srfbp1	92	50.794	ENSVVUG00000019178	SRFBP1	57	44.615	Vulpes_vulpes