EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSAMXG00000041030 (Gene tree)
Gene ID
103037989
Gene Symbol
puf60b
Alias
fe37c05|si:ch211-12p8.2|si:zc12p8.2|wu:fb33e11|wu:fe37c05|zgc:86806
Full Name
poly(U)-binding-splicing factor PUF60-B-like
Gene Type
protein_coding
Species
Astyanax_mexicanus
Status
putative
Strand
Plus strand
Length
14776 bases
Position
chr16:14256513-14271288
Accession
103037989
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAMXP00000041810RRM_1PF00076.221.9e-4513
ENSAMXP00000041810RRM_1PF00076.221.9e-4523
ENSAMXP00000041810RRM_1PF00076.221.9e-4533
ENSAMXP00000052143RRM_1PF00076.222.2e-4513
ENSAMXP00000052143RRM_1PF00076.222.2e-4523
ENSAMXP00000052143RRM_1PF00076.222.2e-4533
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAMXT00000039332-4625XM_022678047ENSAMXP00000041810495 (aa)XP_022533768UPI000BBD907B
ENSAMXT00000036316-4676XM_022678045ENSAMXP00000052143512 (aa)XP_022533766UPI000BBDBFDE
Gene Model
Click here to download ENSAMXG00000041030's gene model file
Pathways
Pathway IDPathway NameSource
amex03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000041030's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSAMXG00000041030puf60b5637.255ENSAMXG00000039454u2af2b6637.255
ENSAMXG00000041030puf60b10077.973ENSAMXG00000036570puf60a9778.752
ENSAMXG00000041030puf60b6134.375ENSAMXG00000033347u2af2a6538.235
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAMXG00000041030puf60b10076.735ENSG00000179950PUF6010076.449Homo_sapiens
ENSAMXG00000041030puf60b10081.404ENSAPOG00000001713puf60b9880.835Acanthochromis_polyacanthus
ENSAMXG00000041030puf60b10075.568ENSAMEG00000006406PUF609275.094Ailuropoda_melanoleuca
ENSAMXG00000041030puf60b10082.543ENSACIG00000021705puf60b10081.973Amphilophus_citrinellus
ENSAMXG00000041030puf60b10072.421ENSACIG00000003263-9972.222Amphilophus_citrinellus
ENSAMXG00000041030puf60b10075.947ENSAOCG00000015558-9775.712Amphiprion_ocellaris
ENSAMXG00000041030puf60b10081.404ENSAOCG00000005395puf60b10080.835Amphiprion_ocellaris
ENSAMXG00000041030puf60b10074.506ENSAPEG00000001836-9974.704Amphiprion_percula
ENSAMXG00000041030puf60b10078.431ENSAPEG00000011923puf60b9777.843Amphiprion_percula
ENSAMXG00000041030puf60b10081.025ENSATEG00000001730puf60b9880.835Anabas_testudineus
ENSAMXG00000041030puf60b10076.426ENSATEG00000006303-9876.326Anabas_testudineus
ENSAMXG00000041030puf60b10074.719ENSAPLG00000010150PUF609977.196Anas_platyrhynchos
ENSAMXG00000041030puf60b10074.026ENSACAG00000001645PUF609677.138Anolis_carolinensis
ENSAMXG00000041030puf60b10076.735ENSANAG00000018626PUF6010076.449Aotus_nancymaae
ENSAMXG00000041030puf60b10082.543ENSACLG00000004462puf60b10081.973Astatotilapia_calliptera
ENSAMXG00000041030puf60b10074.906ENSBTAG00000037493PUF609876.636Bos_taurus
ENSAMXG00000041030puf60b7352.747WBGene00004389rnp-67554.054Caenorhabditis_elegans
ENSAMXG00000041030puf60b10076.735ENSCJAG00000021485PUF609776.449Callithrix_jacchus
ENSAMXG00000041030puf60b10074.345ENSCAFG00000001400PUF609276.075Canis_familiaris
ENSAMXG00000041030puf60b10074.719ENSCAFG00020018754PUF609776.449Canis_lupus_dingo
ENSAMXG00000041030puf60b10074.906ENSCHIG00000001618PUF608676.636Capra_hircus
ENSAMXG00000041030puf60b10074.719ENSTSYG00000011912PUF6010076.449Carlito_syrichta
ENSAMXG00000041030puf60b10069.888ENSCPOG00000014613PUF609371.614Cavia_porcellus
ENSAMXG00000041030puf60b10076.735ENSCCAG00000007744PUF609776.636Cebus_capucinus
ENSAMXG00000041030puf60b10076.735ENSCATG00000035405PUF609776.449Cercocebus_atys
ENSAMXG00000041030puf60b10074.719ENSCLAG00000009154PUF609176.449Chinchilla_lanigera
ENSAMXG00000041030puf60b10076.735ENSCSAG00000008878PUF6010076.449Chlorocebus_sabaeus
ENSAMXG00000041030puf60b10074.532ENSCPBG00000005595PUF609777.009Chrysemys_picta_bellii
ENSAMXG00000041030puf60b6161.420ENSCING00000002156-8861.420Ciona_intestinalis
ENSAMXG00000041030puf60b9847.741ENSCING00000008436-5159.449Ciona_intestinalis
ENSAMXG00000041030puf60b9751.145ENSCSAVG00000001385-8765.306Ciona_savignyi
ENSAMXG00000041030puf60b9746.201ENSCSAVG00000004765-5161.207Ciona_savignyi
ENSAMXG00000041030puf60b6886.575ENSCANG00000041843PUF608886.339Colobus_angolensis_palliatus
ENSAMXG00000041030puf60b10074.719ENSCGRG00001017442Puf609176.636Cricetulus_griseus_chok1gshd
ENSAMXG00000041030puf60b10074.719ENSCGRG00000003717Puf609276.636Cricetulus_griseus_crigri
ENSAMXG00000041030puf60b10070.175ENSCSEG00000014845-8972.407Cynoglossus_semilaevis
ENSAMXG00000041030puf60b10080.076ENSCSEG00000019887puf60b9179.886Cynoglossus_semilaevis
ENSAMXG00000041030puf60b9175.569ENSCVAG00000001560-9875.311Cyprinodon_variegatus
ENSAMXG00000041030puf60b10081.594ENSCVAG00000009386puf60b10081.025Cyprinodon_variegatus
ENSAMXG00000041030puf60b10078.759ENSDARG00000032175puf60a9992.241Danio_rerio
ENSAMXG00000041030puf60b10085.192ENSDARG00000001241puf60b9997.619Danio_rerio
ENSAMXG00000041030puf60b9960.606ENSDNOG00000043278PUF609062.382Dasypus_novemcinctus
ENSAMXG00000041030puf60b10074.906ENSDORG00000004585Puf609476.636Dipodomys_ordii
ENSAMXG00000041030puf60b7963.051FBgn0028577hfp7758.805Drosophila_melanogaster
ENSAMXG00000041030puf60b9766.265ENSEBUG00000005470-8865.863Eptatretus_burgeri
ENSAMXG00000041030puf60b9857.746ENSEBUG00000014291puf60b8158.772Eptatretus_burgeri
ENSAMXG00000041030puf60b10074.719ENSEASG00005009695PUF609776.449Equus_asinus_asinus
ENSAMXG00000041030puf60b10074.719ENSECAG00000024681PUF609676.449Equus_caballus
ENSAMXG00000041030puf60b10077.180ENSELUG00000006507puf60b9976.449Esox_lucius
ENSAMXG00000041030puf60b10080.303ENSELUG00000018443-9980.039Esox_lucius
ENSAMXG00000041030puf60b10074.719ENSFCAG00000001045PUF6010076.449Felis_catus
ENSAMXG00000041030puf60b10065.543ENSFALG00000001136PUF609768.224Ficedula_albicollis
ENSAMXG00000041030puf60b10074.906ENSFDAG00000017177PUF609176.636Fukomys_damarensis
ENSAMXG00000041030puf60b10081.404ENSFHEG00000020046puf60b10080.835Fundulus_heteroclitus
ENSAMXG00000041030puf60b9675.446ENSFHEG00000021687PUF6010075.806Fundulus_heteroclitus
ENSAMXG00000041030puf60b10067.235ENSGMOG00000006392puf60b9966.983Gadus_morhua
ENSAMXG00000041030puf60b6483.721ENSGALG00000039901PUF609486.880Gallus_gallus
ENSAMXG00000041030puf60b10081.214ENSGAFG00000021040puf60b10080.835Gambusia_affinis
ENSAMXG00000041030puf60b10077.030ENSGAFG00000004334-9976.923Gambusia_affinis
ENSAMXG00000041030puf60b10068.381ENSGACG00000001484-10066.288Gasterosteus_aculeatus
ENSAMXG00000041030puf60b10068.501ENSGACG00000004717puf60b9768.501Gasterosteus_aculeatus
ENSAMXG00000041030puf60b10074.532ENSGAGG00000013289PUF609177.009Gopherus_agassizii
ENSAMXG00000041030puf60b10076.735ENSGGOG00000004646PUF609776.449Gorilla_gorilla
ENSAMXG00000041030puf60b10082.543ENSHBUG00000015118puf60b10081.973Haplochromis_burtoni
ENSAMXG00000041030puf60b10078.039ENSHBUG00000009634-10076.275Haplochromis_burtoni
ENSAMXG00000041030puf60b10074.906ENSHGLG00000006111PUF609176.636Heterocephalus_glaber_female
ENSAMXG00000041030puf60b10074.906ENSHGLG00100012362PUF609176.636Heterocephalus_glaber_male
ENSAMXG00000041030puf60b10077.306ENSHCOG00000015541puf60b9978.782Hippocampus_comes
ENSAMXG00000041030puf60b9867.921ENSHCOG00000000378-9965.779Hippocampus_comes
ENSAMXG00000041030puf60b10087.572ENSIPUG00000004660puf60b9987.332Ictalurus_punctatus
ENSAMXG00000041030puf60b10077.165ENSIPUG00000002453puf60a9977.362Ictalurus_punctatus
ENSAMXG00000041030puf60b10074.719ENSSTOG00000025037PUF609276.449Ictidomys_tridecemlineatus
ENSAMXG00000041030puf60b10074.906ENSJJAG00000001076Puf609276.636Jaculus_jaculus
ENSAMXG00000041030puf60b10081.784ENSKMAG00000016745puf60b10081.214Kryptolebias_marmoratus
ENSAMXG00000041030puf60b10072.932ENSKMAG00000010106-10073.308Kryptolebias_marmoratus
ENSAMXG00000041030puf60b10083.117ENSLBEG00000012505puf60b10083.117Labrus_bergylta
ENSAMXG00000041030puf60b5680.743ENSLACG00000005456PUF608184.122Latimeria_chalumnae
ENSAMXG00000041030puf60b10079.317ENSLOCG00000010106puf60b9879.395Lepisosteus_oculatus
ENSAMXG00000041030puf60b10073.783ENSLAFG00000022929PUF609375.514Loxodonta_africana
ENSAMXG00000041030puf60b10076.735ENSMFAG00000043373PUF609876.449Macaca_fascicularis
ENSAMXG00000041030puf60b10076.735ENSMMUG00000013558PUF609776.449Macaca_mulatta
ENSAMXG00000041030puf60b10076.735ENSMNEG00000031099PUF609776.449Macaca_nemestrina
ENSAMXG00000041030puf60b10076.735ENSMLEG00000040009PUF6010076.449Mandrillus_leucophaeus
ENSAMXG00000041030puf60b10076.660ENSMAMG00000019476-9877.230Mastacembelus_armatus
ENSAMXG00000041030puf60b10079.886ENSMAMG00000010394puf60b10077.306Mastacembelus_armatus
ENSAMXG00000041030puf60b10077.989ENSMZEG00005019425-9876.281Maylandia_zebra
ENSAMXG00000041030puf60b10082.543ENSMZEG00005018515puf60b10081.973Maylandia_zebra
ENSAMXG00000041030puf60b10074.719ENSMGAG00000013070PUF609587.209Meleagris_gallopavo
ENSAMXG00000041030puf60b6783.657ENSMAUG00000014267-8886.667Mesocricetus_auratus
ENSAMXG00000041030puf60b9662.325ENSMAUG00000018549-9562.020Mesocricetus_auratus
ENSAMXG00000041030puf60b10074.719ENSMICG00000012226PUF609876.449Microcebus_murinus
ENSAMXG00000041030puf60b10074.906ENSMOCG00000018780Puf609276.636Microtus_ochrogaster
ENSAMXG00000041030puf60b10069.643ENSMMOG00000018059-9972.336Mola_mola
ENSAMXG00000041030puf60b10080.645ENSMMOG00000004217puf60b10080.266Mola_mola
ENSAMXG00000041030puf60b10074.719ENSMODG00000009161PUF609376.735Monodelphis_domestica
ENSAMXG00000041030puf60b10075.285ENSMALG00000000200-9874.953Monopterus_albus
ENSAMXG00000041030puf60b10074.566ENSMALG00000006797puf60b9773.410Monopterus_albus
ENSAMXG00000041030puf60b10074.719MGP_CAROLIEiJ_G0019910Puf609176.449Mus_caroli
ENSAMXG00000041030puf60b10074.719ENSMUSG00000002524Puf609176.449Mus_musculus
ENSAMXG00000041030puf60b10074.719MGP_PahariEiJ_G0019920Puf609176.449Mus_pahari
ENSAMXG00000041030puf60b10074.719MGP_SPRETEiJ_G0020812Puf609176.449Mus_spretus
ENSAMXG00000041030puf60b10074.532ENSMPUG00000008137PUF609176.262Mustela_putorius_furo
ENSAMXG00000041030puf60b10070.793ENSMLUG00000013032-9772.973Myotis_lucifugus
ENSAMXG00000041030puf60b10075.188ENSMLUG00000000238-9277.213Myotis_lucifugus
ENSAMXG00000041030puf60b10074.906ENSNGAG00000000712Puf6010076.636Nannospalax_galili
ENSAMXG00000041030puf60b7983.777ENSNBRG00000013047puf60b8392.179Neolamprologus_brichardi
ENSAMXG00000041030puf60b10077.883ENSNBRG00000017223-9876.326Neolamprologus_brichardi
ENSAMXG00000041030puf60b10076.735ENSNLEG00000002156PUF609776.449Nomascus_leucogenys
ENSAMXG00000041030puf60b7293.863ENSOPRG00000002147PUF607293.863Ochotona_princeps
ENSAMXG00000041030puf60b9857.143ENSODEG00000015513-9756.038Octodon_degus
ENSAMXG00000041030puf60b7090.625ENSODEG00000014024-8990.625Octodon_degus
ENSAMXG00000041030puf60b10078.220ENSONIG00000014030-9776.515Oreochromis_niloticus
ENSAMXG00000041030puf60b10082.543ENSONIG00000006247puf60b9781.973Oreochromis_niloticus
ENSAMXG00000041030puf60b9766.206ENSOANG00000006962PUF609765.217Ornithorhynchus_anatinus
ENSAMXG00000041030puf60b10081.214ENSORLG00000012279puf60b10081.214Oryzias_latipes
ENSAMXG00000041030puf60b9976.693ENSORLG00000028655-9976.693Oryzias_latipes
ENSAMXG00000041030puf60b9976.136ENSORLG00020018144-9776.136Oryzias_latipes_hni
ENSAMXG00000041030puf60b10081.214ENSORLG00020007333puf6010081.214Oryzias_latipes_hni
ENSAMXG00000041030puf60b10081.025ENSORLG00015007718puf60b10080.835Oryzias_latipes_hsok
ENSAMXG00000041030puf60b9976.136ENSORLG00015016833-9776.136Oryzias_latipes_hsok
ENSAMXG00000041030puf60b9976.136ENSOMEG00000022185-9775.947Oryzias_melastigma
ENSAMXG00000041030puf60b10081.113ENSOMEG00000001643puf60b10080.716Oryzias_melastigma
ENSAMXG00000041030puf60b10074.719ENSOGAG00000006259PUF609276.449Otolemur_garnettii
ENSAMXG00000041030puf60b10074.667ENSOARG00000016235PUF609775.188Ovis_aries
ENSAMXG00000041030puf60b10076.735ENSPPAG00000029933PUF609776.449Pan_paniscus
ENSAMXG00000041030puf60b10074.719ENSPPRG00000003257PUF6010076.449Panthera_pardus
ENSAMXG00000041030puf60b10075.775ENSPTIG00000009795PUF609874.206Panthera_tigris_altaica
ENSAMXG00000041030puf60b10076.923ENSPTRG00000020670PUF609776.636Pan_troglodytes
ENSAMXG00000041030puf60b10076.923ENSPTRG00000043963-9776.636Pan_troglodytes
ENSAMXG00000041030puf60b10076.735ENSPANG00000021936PUF609776.449Papio_anubis
ENSAMXG00000041030puf60b10079.773ENSPKIG00000004295puf60a9988.358Paramormyrops_kingsleyae
ENSAMXG00000041030puf60b10080.455ENSPKIG00000012204puf60b10081.784Paramormyrops_kingsleyae
ENSAMXG00000041030puf60b10074.157ENSPSIG00000004679PUF609876.636Pelodiscus_sinensis
ENSAMXG00000041030puf60b10080.040ENSPMGG00000013444puf60b9979.249Periophthalmus_magnuspinnatus
ENSAMXG00000041030puf60b10074.906ENSPEMG00000008820Puf609276.636Peromyscus_maniculatus_bairdii
ENSAMXG00000041030puf60b10074.719ENSPCIG00000020270PUF609876.449Phascolarctos_cinereus
ENSAMXG00000041030puf60b10075.758ENSPFOG00000011118-9775.047Poecilia_formosa
ENSAMXG00000041030puf60b10081.404ENSPFOG00000019217puf60b9880.196Poecilia_formosa
ENSAMXG00000041030puf60b10081.404ENSPLAG00000010754puf60b10080.835Poecilia_latipinna
ENSAMXG00000041030puf60b10075.947ENSPLAG00000017025-9074.763Poecilia_latipinna
ENSAMXG00000041030puf60b10081.404ENSPMEG00000000838puf60b10080.835Poecilia_mexicana
ENSAMXG00000041030puf60b10075.947ENSPMEG00000009767-9075.142Poecilia_mexicana
ENSAMXG00000041030puf60b10081.909ENSPREG00000005440puf60b10080.915Poecilia_reticulata
ENSAMXG00000041030puf60b6884.658ENSPPYG00000018951-8484.426Pongo_abelii
ENSAMXG00000041030puf60b6883.333ENSPCAG00000014837PUF608886.066Procavia_capensis
ENSAMXG00000041030puf60b10074.532ENSPCOG00000027981PUF609876.262Propithecus_coquereli
ENSAMXG00000041030puf60b10096.203ENSPVAG00000016167PUF608196.203Pteropus_vampyrus
ENSAMXG00000041030puf60b10082.543ENSPNYG00000002556puf60b10081.973Pundamilia_nyererei
ENSAMXG00000041030puf60b10077.989ENSPNYG00000004273-9876.281Pundamilia_nyererei
ENSAMXG00000041030puf60b10089.495ENSPNAG00000019415puf60b8989.495Pygocentrus_nattereri
ENSAMXG00000041030puf60b10078.168ENSPNAG00000019909puf60a9978.947Pygocentrus_nattereri
ENSAMXG00000041030puf60b10074.719ENSRNOG00000009960Puf609276.449Rattus_norvegicus
ENSAMXG00000041030puf60b10076.735ENSRBIG00000035274PUF609776.449Rhinopithecus_bieti
ENSAMXG00000041030puf60b10076.735ENSRROG00000029360PUF609876.449Rhinopithecus_roxellana
ENSAMXG00000041030puf60b10075.422ENSSBOG00000027089PUF609775.000Saimiri_boliviensis_boliviensis
ENSAMXG00000041030puf60b8973.640ENSSHAG00000006668PUF608875.574Sarcophilus_harrisii
ENSAMXG00000041030puf60b10081.574ENSSFOG00015019619puf60b9980.754Scleropages_formosus
ENSAMXG00000041030puf60b10074.503ENSSFOG00015019371puf60a9879.563Scleropages_formosus
ENSAMXG00000041030puf60b7394.946ENSSMAG00000016381puf60b7294.946Scophthalmus_maximus
ENSAMXG00000041030puf60b10079.920ENSSDUG00000009935puf60b9980.769Seriola_dumerili
ENSAMXG00000041030puf60b9777.210ENSSDUG00000007048-9577.299Seriola_dumerili
ENSAMXG00000041030puf60b10075.188ENSSLDG00000007366-9975.514Seriola_lalandi_dorsalis
ENSAMXG00000041030puf60b10081.025ENSSLDG00000024011puf60b10078.413Seriola_lalandi_dorsalis
ENSAMXG00000041030puf60b6376.401ENSSPUG00000013518PUF609276.970Sphenodon_punctatus
ENSAMXG00000041030puf60b10075.856ENSSPAG00000020285-10077.273Stegastes_partitus
ENSAMXG00000041030puf60b10077.306ENSSPAG00000012144puf60b10078.229Stegastes_partitus
ENSAMXG00000041030puf60b10074.719ENSSSCG00000038800PUF6010073.134Sus_scrofa
ENSAMXG00000041030puf60b10073.546ENSTGUG00000012797-6687.719Taeniopygia_guttata
ENSAMXG00000041030puf60b10080.266ENSTRUG00000005420puf60b10078.413Takifugu_rubripes
ENSAMXG00000041030puf60b10074.560ENSTRUG00000008843-10073.973Takifugu_rubripes
ENSAMXG00000041030puf60b10072.624ENSTNIG00000003069-9973.143Tetraodon_nigroviridis
ENSAMXG00000041030puf60b10080.266ENSTNIG00000013675puf60b9980.455Tetraodon_nigroviridis
ENSAMXG00000041030puf60b5678.767ENSTBEG00000002751-9782.474Tupaia_belangeri
ENSAMXG00000041030puf60b7755.710ENSTBEG00000001899-10057.418Tupaia_belangeri
ENSAMXG00000041030puf60b10074.672ENSTTRG00000017088PUF6010075.514Tursiops_truncatus
ENSAMXG00000041030puf60b10074.719ENSUAMG00000024917PUF609776.449Ursus_americanus
ENSAMXG00000041030puf60b10075.568ENSUMAG00000000272PUF608084.426Ursus_maritimus
ENSAMXG00000041030puf60b10074.719ENSVVUG00000022527PUF6010076.449Vulpes_vulpes
ENSAMXG00000041030puf60b10074.532ENSXETG00000012469puf609875.969Xenopus_tropicalis
ENSAMXG00000041030puf60b10080.784ENSXCOG00000012355puf60b10080.196Xiphophorus_couchianus
ENSAMXG00000041030puf60b10075.391ENSXMAG00000010507-9874.219Xiphophorus_maculatus
ENSAMXG00000041030puf60b10081.404ENSXMAG00000001862puf60b10080.835Xiphophorus_maculatus

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