EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSAMXG00000041214 (Gene tree)
Gene ID
103043938
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Astyanax_mexicanus
Status
putative
Strand
Plus strand
Length
5029 bases
Position
chr22:643647-648675
Accession
103043938
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAMXP00000046037LSMPF01423.224e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAMXT00000049725-2593XM_007251495ENSAMXP00000046037102 (aa)XP_007251557UPI000440B6B6
Gene Model
Click here to download ENSAMXG00000041214's gene model file
Pathways
Pathway IDPathway NameSource
amex03018RNA degradationKEGG
amex03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000041214's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSAMXG00000041214lsm37732.927ENSAMXG00000033526snrpd26932.927
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAMXG00000041214lsm310097.059ENSG00000170860LSM310097.059Homo_sapiens
ENSAMXG00000041214lsm310098.039ENSAPOG00000018947lsm310098.039Acanthochromis_polyacanthus
ENSAMXG00000041214lsm310097.059ENSAMEG00000009405LSM310097.059Ailuropoda_melanoleuca
ENSAMXG00000041214lsm310097.059ENSACIG00000004574lsm37197.059Amphilophus_citrinellus
ENSAMXG00000041214lsm310098.039ENSAOCG00000007658lsm310098.039Amphiprion_ocellaris
ENSAMXG00000041214lsm310098.039ENSAPEG00000018621lsm310098.039Amphiprion_percula
ENSAMXG00000041214lsm310098.039ENSATEG00000005153lsm310098.039Anabas_testudineus
ENSAMXG00000041214lsm39398.947ENSAPLG00000014499LSM310098.947Anas_platyrhynchos
ENSAMXG00000041214lsm310098.039ENSACAG00000013503LSM310098.039Anolis_carolinensis
ENSAMXG00000041214lsm310097.059ENSANAG00000034627LSM310097.059Aotus_nancymaae
ENSAMXG00000041214lsm310093.137ENSANAG00000002903-10093.137Aotus_nancymaae
ENSAMXG00000041214lsm39597.938ENSACLG00000001726-9497.938Astatotilapia_calliptera
ENSAMXG00000041214lsm39498.958ENSBTAG00000007363LSM310098.958Bos_taurus
ENSAMXG00000041214lsm310070.588WBGene00003077lsm-310070.588Caenorhabditis_elegans
ENSAMXG00000041214lsm310095.098ENSCAFG00000001760LSM310095.098Canis_familiaris
ENSAMXG00000041214lsm310088.235ENSCAFG00020016680-10088.235Canis_lupus_dingo
ENSAMXG00000041214lsm310094.118ENSCAFG00020026452-10094.118Canis_lupus_dingo
ENSAMXG00000041214lsm310095.098ENSCAFG00020021584-10095.098Canis_lupus_dingo
ENSAMXG00000041214lsm310086.916ENSCAFG00020020950-10086.916Canis_lupus_dingo
ENSAMXG00000041214lsm310095.098ENSCAFG00020017266-10095.098Canis_lupus_dingo
ENSAMXG00000041214lsm310097.059ENSCHIG00000024650LSM310097.059Capra_hircus
ENSAMXG00000041214lsm39979.208ENSTSYG00000028528-9979.208Carlito_syrichta
ENSAMXG00000041214lsm310098.039ENSTSYG00000005204-10098.039Carlito_syrichta
ENSAMXG00000041214lsm39498.958ENSCAPG00000015760LSM310098.958Cavia_aperea
ENSAMXG00000041214lsm310097.059ENSCPOG00000034071LSM310097.059Cavia_porcellus
ENSAMXG00000041214lsm310077.451ENSCCAG00000032763-10077.451Cebus_capucinus
ENSAMXG00000041214lsm310097.059ENSCCAG00000036499-10097.059Cebus_capucinus
ENSAMXG00000041214lsm310097.059ENSCCAG00000019503-10097.059Cebus_capucinus
ENSAMXG00000041214lsm310097.059ENSCATG00000039421LSM310097.059Cercocebus_atys
ENSAMXG00000041214lsm39977.228ENSCATG00000031630-9977.228Cercocebus_atys
ENSAMXG00000041214lsm310097.059ENSCLAG00000015997LSM310097.059Chinchilla_lanigera
ENSAMXG00000041214lsm310092.157ENSCSAG00000019525-10092.157Chlorocebus_sabaeus
ENSAMXG00000041214lsm310098.039ENSCPBG00000014531LSM310098.039Chrysemys_picta_bellii
ENSAMXG00000041214lsm310082.692ENSCSAVG00000009542-10082.692Ciona_savignyi
ENSAMXG00000041214lsm310097.059ENSCANG00000033944-10097.059Colobus_angolensis_palliatus
ENSAMXG00000041214lsm310094.118ENSCANG00000038037-10094.118Colobus_angolensis_palliatus
ENSAMXG00000041214lsm310094.118ENSCANG00000018782-10094.118Colobus_angolensis_palliatus
ENSAMXG00000041214lsm39882.000ENSCGRG00001011396-10082.000Cricetulus_griseus_chok1gshd
ENSAMXG00000041214lsm310097.059ENSCGRG00001017598Lsm310097.059Cricetulus_griseus_chok1gshd
ENSAMXG00000041214lsm310073.786ENSCGRG00001008639-10073.786Cricetulus_griseus_chok1gshd
ENSAMXG00000041214lsm39384.211ENSCGRG00000012129-10084.211Cricetulus_griseus_crigri
ENSAMXG00000041214lsm310097.059ENSCGRG00000016159Lsm310097.059Cricetulus_griseus_crigri
ENSAMXG00000041214lsm310098.039ENSCSEG00000015071lsm37798.039Cynoglossus_semilaevis
ENSAMXG00000041214lsm310097.059ENSCVAG00000006933lsm310097.059Cyprinodon_variegatus
ENSAMXG00000041214lsm310098.039ENSDARG00000089663lsm310098.039Danio_rerio
ENSAMXG00000041214lsm310097.059ENSDNOG00000030808LSM310097.059Dasypus_novemcinctus
ENSAMXG00000041214lsm310097.059ENSDORG00000006894-10097.059Dipodomys_ordii
ENSAMXG00000041214lsm310077.451ENSDORG00000024490-10077.451Dipodomys_ordii
ENSAMXG00000041214lsm310079.612FBgn0051184LSm310079.612Drosophila_melanogaster
ENSAMXG00000041214lsm310097.059ENSETEG00000016207LSM310097.059Echinops_telfairi
ENSAMXG00000041214lsm310089.216ENSEBUG00000004943lsm310089.216Eptatretus_burgeri
ENSAMXG00000041214lsm310097.059ENSEASG00005015443LSM310097.059Equus_asinus_asinus
ENSAMXG00000041214lsm310097.059ENSECAG00000007803LSM310097.059Equus_caballus
ENSAMXG00000041214lsm310099.020ENSELUG00000018922lsm310099.020Esox_lucius
ENSAMXG00000041214lsm310073.529ENSFCAG00000044344-10073.529Felis_catus
ENSAMXG00000041214lsm310097.059ENSFCAG00000038453LSM310097.059Felis_catus
ENSAMXG00000041214lsm310098.039ENSFALG00000012644LSM310098.039Ficedula_albicollis
ENSAMXG00000041214lsm310097.059ENSFDAG00000011470LSM310097.059Fukomys_damarensis
ENSAMXG00000041214lsm310098.039ENSFHEG00000000876lsm310098.039Fundulus_heteroclitus
ENSAMXG00000041214lsm39397.895ENSGMOG00000011024lsm310097.895Gadus_morhua
ENSAMXG00000041214lsm310098.039ENSGAFG00000013965lsm310098.039Gambusia_affinis
ENSAMXG00000041214lsm310098.039ENSGACG00000003488lsm310098.039Gasterosteus_aculeatus
ENSAMXG00000041214lsm310098.039ENSGAGG00000025707LSM310098.039Gopherus_agassizii
ENSAMXG00000041214lsm310097.059ENSGGOG00000010006LSM310097.059Gorilla_gorilla
ENSAMXG00000041214lsm310098.039ENSHBUG00000022399lsm310098.039Haplochromis_burtoni
ENSAMXG00000041214lsm310097.059ENSHGLG00000000651LSM310097.059Heterocephalus_glaber_female
ENSAMXG00000041214lsm310077.451ENSHGLG00000015564-10077.451Heterocephalus_glaber_female
ENSAMXG00000041214lsm310077.451ENSHGLG00100010658-10077.451Heterocephalus_glaber_male
ENSAMXG00000041214lsm310097.059ENSHGLG00100011343LSM310097.059Heterocephalus_glaber_male
ENSAMXG00000041214lsm310097.059ENSHCOG00000013481lsm310097.059Hippocampus_comes
ENSAMXG00000041214lsm310098.039ENSIPUG00000009207lsm310098.039Ictalurus_punctatus
ENSAMXG00000041214lsm310097.059ENSSTOG00000006842LSM310097.059Ictidomys_tridecemlineatus
ENSAMXG00000041214lsm310097.059ENSJJAG00000017351Lsm310097.059Jaculus_jaculus
ENSAMXG00000041214lsm310088.235ENSJJAG00000012797-10088.235Jaculus_jaculus
ENSAMXG00000041214lsm39974.510ENSJJAG00000018311-10074.510Jaculus_jaculus
ENSAMXG00000041214lsm310097.059ENSKMAG00000015182lsm310097.059Kryptolebias_marmoratus
ENSAMXG00000041214lsm39695.918ENSLBEG00000021292lsm310095.918Labrus_bergylta
ENSAMXG00000041214lsm310098.039ENSLOCG00000013560lsm310098.039Lepisosteus_oculatus
ENSAMXG00000041214lsm310096.117ENSLAFG00000023308LSM310096.117Loxodonta_africana
ENSAMXG00000041214lsm310097.059ENSMFAG00000003185LSM310097.059Macaca_fascicularis
ENSAMXG00000041214lsm310097.059ENSMMUG00000023126LSM310097.059Macaca_mulatta
ENSAMXG00000041214lsm39677.551ENSMMUG00000002294-9577.551Macaca_mulatta
ENSAMXG00000041214lsm310074.510ENSMMUG00000043596-10074.510Macaca_mulatta
ENSAMXG00000041214lsm39979.208ENSMNEG00000037686-9979.208Macaca_nemestrina
ENSAMXG00000041214lsm310097.059ENSMNEG00000043632LSM310097.059Macaca_nemestrina
ENSAMXG00000041214lsm310097.059ENSMLEG00000036162LSM310097.059Mandrillus_leucophaeus
ENSAMXG00000041214lsm310098.039ENSMAMG00000012807lsm310098.039Mastacembelus_armatus
ENSAMXG00000041214lsm310098.039ENSMZEG00005016682lsm37398.039Maylandia_zebra
ENSAMXG00000041214lsm39498.958ENSMGAG00000007776LSM310098.958Meleagris_gallopavo
ENSAMXG00000041214lsm310082.353ENSMICG00000027821-10082.353Microcebus_murinus
ENSAMXG00000041214lsm310096.078ENSMICG00000032361-10096.078Microcebus_murinus
ENSAMXG00000041214lsm310097.059ENSMOCG00000014269Lsm310097.059Microtus_ochrogaster
ENSAMXG00000041214lsm310097.059ENSMMOG00000020715lsm310097.059Mola_mola
ENSAMXG00000041214lsm310096.078ENSMODG00000007275LSM310096.078Monodelphis_domestica
ENSAMXG00000041214lsm310098.039ENSMALG00000006485lsm310098.039Monopterus_albus
ENSAMXG00000041214lsm310097.059ENSMUSG00000034192Lsm310097.059Mus_musculus
ENSAMXG00000041214lsm310097.059MGP_PahariEiJ_G0022402Lsm310097.059Mus_pahari
ENSAMXG00000041214lsm310097.059MGP_SPRETEiJ_G0029681Lsm310097.059Mus_spretus
ENSAMXG00000041214lsm39785.859ENSMPUG00000019120-9785.859Mustela_putorius_furo
ENSAMXG00000041214lsm38389.412ENSMPUG00000017256-10089.412Mustela_putorius_furo
ENSAMXG00000041214lsm310092.157ENSMLUG00000024700-10092.157Myotis_lucifugus
ENSAMXG00000041214lsm310097.059ENSMLUG00000010677LSM310097.059Myotis_lucifugus
ENSAMXG00000041214lsm310071.569ENSNGAG00000013716-10071.569Nannospalax_galili
ENSAMXG00000041214lsm310097.059ENSNGAG00000022450Lsm310097.059Nannospalax_galili
ENSAMXG00000041214lsm39979.208ENSNGAG00000010207-9979.208Nannospalax_galili
ENSAMXG00000041214lsm310098.039ENSNBRG00000014318lsm310098.039Neolamprologus_brichardi
ENSAMXG00000041214lsm310097.059ENSNLEG00000005079LSM310097.059Nomascus_leucogenys
ENSAMXG00000041214lsm310088.235ENSNLEG00000030229-10088.235Nomascus_leucogenys
ENSAMXG00000041214lsm310095.098ENSODEG00000019158-10095.098Octodon_degus
ENSAMXG00000041214lsm310097.059ENSODEG00000001726LSM310097.059Octodon_degus
ENSAMXG00000041214lsm310096.078ENSODEG00000019740-10096.078Octodon_degus
ENSAMXG00000041214lsm310089.216ENSODEG00000019403-10089.216Octodon_degus
ENSAMXG00000041214lsm310098.039ENSONIG00000021369-10098.039Oreochromis_niloticus
ENSAMXG00000041214lsm310098.039ENSONIG00000000370lsm310098.039Oreochromis_niloticus
ENSAMXG00000041214lsm310096.078ENSOANG00000012273LSM310096.078Ornithorhynchus_anatinus
ENSAMXG00000041214lsm310092.157ENSOCUG00000011088-10092.157Oryctolagus_cuniculus
ENSAMXG00000041214lsm310097.059ENSOCUG00000027653-10097.059Oryctolagus_cuniculus
ENSAMXG00000041214lsm310096.078ENSORLG00000025900lsm310096.078Oryzias_latipes
ENSAMXG00000041214lsm310096.078ENSORLG00020007125lsm310096.078Oryzias_latipes_hni
ENSAMXG00000041214lsm310096.078ENSORLG00015002944lsm310096.078Oryzias_latipes_hsok
ENSAMXG00000041214lsm310096.078ENSOMEG00000001915lsm310096.078Oryzias_melastigma
ENSAMXG00000041214lsm310087.255ENSOGAG00000033051-10087.255Otolemur_garnettii
ENSAMXG00000041214lsm310097.059ENSOGAG00000007659-10097.059Otolemur_garnettii
ENSAMXG00000041214lsm39695.918ENSOGAG00000028858-10095.918Otolemur_garnettii
ENSAMXG00000041214lsm310096.117ENSOARG00000000600LSM310096.117Ovis_aries
ENSAMXG00000041214lsm310097.059ENSPPAG00000034074LSM310097.059Pan_paniscus
ENSAMXG00000041214lsm39989.109ENSPPRG00000010610-8989.109Panthera_pardus
ENSAMXG00000041214lsm310096.078ENSPPRG00000020953-10096.078Panthera_pardus
ENSAMXG00000041214lsm310097.059ENSPPRG00000012912-10097.059Panthera_pardus
ENSAMXG00000041214lsm310097.059ENSPTIG00000003463-10097.059Panthera_tigris_altaica
ENSAMXG00000041214lsm310097.059ENSPTIG00000013072-10097.059Panthera_tigris_altaica
ENSAMXG00000041214lsm310097.059ENSPTRG00000014650LSM310097.059Pan_troglodytes
ENSAMXG00000041214lsm310075.490ENSPANG00000032192-10075.490Papio_anubis
ENSAMXG00000041214lsm310097.059ENSPANG00000009378LSM310097.059Papio_anubis
ENSAMXG00000041214lsm310099.020ENSPKIG00000008037lsm39199.020Paramormyrops_kingsleyae
ENSAMXG00000041214lsm310098.039ENSPSIG00000015720LSM310098.039Pelodiscus_sinensis
ENSAMXG00000041214lsm39593.814ENSPMGG00000012103lsm39893.814Periophthalmus_magnuspinnatus
ENSAMXG00000041214lsm310081.373ENSPEMG00000020213-10081.373Peromyscus_maniculatus_bairdii
ENSAMXG00000041214lsm310097.059ENSPEMG00000015797Lsm310097.059Peromyscus_maniculatus_bairdii
ENSAMXG00000041214lsm310098.039ENSPFOG00000008372lsm310098.039Poecilia_formosa
ENSAMXG00000041214lsm310098.039ENSPLAG00000000563lsm310098.039Poecilia_latipinna
ENSAMXG00000041214lsm310098.039ENSPMEG00000022052lsm310098.039Poecilia_mexicana
ENSAMXG00000041214lsm310098.039ENSPREG00000022485lsm310098.039Poecilia_reticulata
ENSAMXG00000041214lsm310097.059ENSPPYG00000013402LSM310097.059Pongo_abelii
ENSAMXG00000041214lsm310097.059ENSPCAG00000017077LSM310097.059Procavia_capensis
ENSAMXG00000041214lsm39476.042ENSPCOG00000014435-9876.042Propithecus_coquereli
ENSAMXG00000041214lsm310096.078ENSPCOG00000016217-10096.078Propithecus_coquereli
ENSAMXG00000041214lsm310097.059ENSPVAG00000016795LSM310097.059Pteropus_vampyrus
ENSAMXG00000041214lsm310098.039ENSPNYG00000009552lsm37398.039Pundamilia_nyererei
ENSAMXG00000041214lsm3100100.000ENSPNAG00000023467lsm3100100.000Pygocentrus_nattereri
ENSAMXG00000041214lsm310097.059ENSRNOG00000008733Lsm310097.059Rattus_norvegicus
ENSAMXG00000041214lsm310097.059ENSRBIG00000034399LSM310097.059Rhinopithecus_bieti
ENSAMXG00000041214lsm310081.373ENSRBIG00000043783-10081.373Rhinopithecus_bieti
ENSAMXG00000041214lsm310086.275ENSRROG00000044047-10086.275Rhinopithecus_roxellana
ENSAMXG00000041214lsm310097.059ENSRROG00000033276-10097.059Rhinopithecus_roxellana
ENSAMXG00000041214lsm310082.353ENSRROG00000039868-10082.353Rhinopithecus_roxellana
ENSAMXG00000041214lsm310078.431ENSRROG00000044056-10078.431Rhinopithecus_roxellana
ENSAMXG00000041214lsm310097.059ENSSBOG00000024310LSM310097.059Saimiri_boliviensis_boliviensis
ENSAMXG00000041214lsm3100100.000ENSSFOG00015007071lsm3100100.000Scleropages_formosus
ENSAMXG00000041214lsm310098.039ENSSMAG00000001818lsm310098.039Scophthalmus_maximus
ENSAMXG00000041214lsm310098.039ENSSDUG00000006040lsm310098.039Seriola_dumerili
ENSAMXG00000041214lsm310098.039ENSSLDG00000006399lsm310098.039Seriola_lalandi_dorsalis
ENSAMXG00000041214lsm35798.276ENSSARG00000005275-10098.276Sorex_araneus
ENSAMXG00000041214lsm39398.947ENSSPUG00000017047-9998.947Sphenodon_punctatus
ENSAMXG00000041214lsm310088.235ENSSPUG00000005394LSM310088.235Sphenodon_punctatus
ENSAMXG00000041214lsm310086.275ENSSPAG00000000934lsm310086.275Stegastes_partitus
ENSAMXG00000041214lsm310097.059ENSSSCG00000011601LSM310097.059Sus_scrofa
ENSAMXG00000041214lsm39574.227ENSSSCG00000023718-9974.227Sus_scrofa
ENSAMXG00000041214lsm310098.039ENSTGUG00000008327LSM310098.039Taeniopygia_guttata
ENSAMXG00000041214lsm310097.059ENSTRUG00000023175lsm310097.059Takifugu_rubripes
ENSAMXG00000041214lsm310097.059ENSTNIG00000005589lsm310097.059Tetraodon_nigroviridis
ENSAMXG00000041214lsm310087.255ENSTBEG00000001050-9987.255Tupaia_belangeri
ENSAMXG00000041214lsm310097.059ENSTTRG00000011197LSM310097.059Tursiops_truncatus
ENSAMXG00000041214lsm310097.059ENSUAMG00000017250-10097.059Ursus_americanus
ENSAMXG00000041214lsm310097.059ENSUMAG00000015905LSM310097.059Ursus_maritimus
ENSAMXG00000041214lsm39398.947ENSVPAG00000010709LSM310098.947Vicugna_pacos
ENSAMXG00000041214lsm310093.137ENSVVUG00000007332-9193.137Vulpes_vulpes
ENSAMXG00000041214lsm310091.176ENSVVUG00000005684-10091.176Vulpes_vulpes
ENSAMXG00000041214lsm310093.137ENSVVUG00000029294-10093.137Vulpes_vulpes
ENSAMXG00000041214lsm310088.235ENSVVUG00000024228-10088.235Vulpes_vulpes
ENSAMXG00000041214lsm310092.157ENSVVUG00000006481-10092.157Vulpes_vulpes
ENSAMXG00000041214lsm310097.059ENSXETG00000011534lsm310097.059Xenopus_tropicalis
ENSAMXG00000041214lsm310098.039ENSXCOG00000017432LSM310098.039Xiphophorus_couchianus
ENSAMXG00000041214lsm310098.039ENSXMAG00000009151lsm310098.039Xiphophorus_maculatus

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