EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000041609 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 2825 bases
Position: chrAPWO02000402.1:374094-376918
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000047982	zf-C2H2	PF00096.26	1.3e-58	1	8
ENSAMXP00000047982	zf-C2H2	PF00096.26	1.3e-58	2	8
ENSAMXP00000047982	zf-C2H2	PF00096.26	1.3e-58	3	8
ENSAMXP00000047982	zf-C2H2	PF00096.26	1.3e-58	4	8
ENSAMXP00000047982	zf-C2H2	PF00096.26	1.3e-58	5	8
ENSAMXP00000047982	zf-C2H2	PF00096.26	1.3e-58	6	8
ENSAMXP00000047982	zf-C2H2	PF00096.26	1.3e-58	7	8
ENSAMXP00000047982	zf-C2H2	PF00096.26	1.3e-58	8	8
ENSAMXP00000047982	zf-met	PF12874.7	1.1e-11	1	3
ENSAMXP00000047982	zf-met	PF12874.7	1.1e-11	2	3
ENSAMXP00000047982	zf-met	PF12874.7	1.1e-11	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000039428	-	2657	-	ENSAMXP00000047982	335 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000041609's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000041609's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000041609	-	92	36.747	ENSAMXG00000002273	patz1	56	42.308
ENSAMXG00000041609	-	95	62.016	ENSAMXG00000037326	-	92	60.000
ENSAMXG00000041609	-	92	68.919	ENSAMXG00000009558	-	93	68.553
ENSAMXG00000041609	-	92	72.403	ENSAMXG00000039879	-	98	72.403
ENSAMXG00000041609	-	95	42.500	ENSAMXG00000037544	GFI1B	57	42.500
ENSAMXG00000041609	-	91	42.958	ENSAMXG00000034873	-	80	42.958
ENSAMXG00000041609	-	97	50.235	ENSAMXG00000013492	-	97	44.068
ENSAMXG00000041609	-	96	56.875	ENSAMXG00000038325	-	96	56.875
ENSAMXG00000041609	-	88	42.478	ENSAMXG00000035246	-	66	42.478
ENSAMXG00000041609	-	91	60.104	ENSAMXG00000019489	-	93	60.104
ENSAMXG00000041609	-	99	66.667	ENSAMXG00000039408	-	96	61.538
ENSAMXG00000041609	-	96	71.610	ENSAMXG00000037703	-	84	71.163
ENSAMXG00000041609	-	99	59.127	ENSAMXG00000037709	-	91	61.658
ENSAMXG00000041609	-	95	49.071	ENSAMXG00000035127	-	89	44.681
ENSAMXG00000041609	-	92	38.785	ENSAMXG00000029059	-	67	38.785
ENSAMXG00000041609	-	92	60.714	ENSAMXG00000029960	-	95	60.714
ENSAMXG00000041609	-	92	63.761	ENSAMXG00000033013	-	81	63.761
ENSAMXG00000041609	-	96	62.416	ENSAMXG00000032212	-	86	62.416
ENSAMXG00000041609	-	92	43.519	ENSAMXG00000041862	-	95	43.256
ENSAMXG00000041609	-	100	69.512	ENSAMXG00000041861	-	94	69.512
ENSAMXG00000041609	-	92	70.100	ENSAMXG00000041865	-	98	70.100
ENSAMXG00000041609	-	97	40.323	ENSAMXG00000041864	prdm5	89	42.604
ENSAMXG00000041609	-	100	62.941	ENSAMXG00000017959	-	99	62.136
ENSAMXG00000041609	-	92	72.483	ENSAMXG00000024978	-	96	72.483
ENSAMXG00000041609	-	92	43.750	ENSAMXG00000015228	-	53	43.750
ENSAMXG00000041609	-	92	56.667	ENSAMXG00000034333	-	84	56.667
ENSAMXG00000041609	-	92	73.077	ENSAMXG00000035920	-	87	73.077
ENSAMXG00000041609	-	92	63.946	ENSAMXG00000037143	-	93	63.946
ENSAMXG00000041609	-	96	34.295	ENSAMXG00000039622	zbtb41	52	34.524
ENSAMXG00000041609	-	91	45.652	ENSAMXG00000037382	-	95	34.826
ENSAMXG00000041609	-	92	61.780	ENSAMXG00000041650	-	86	61.780
ENSAMXG00000041609	-	93	65.957	ENSAMXG00000030530	-	97	66.667
ENSAMXG00000041609	-	96	61.039	ENSAMXG00000033201	-	97	61.039
ENSAMXG00000041609	-	99	58.702	ENSAMXG00000035875	-	99	58.702
ENSAMXG00000041609	-	95	66.667	ENSAMXG00000038324	-	80	66.667
ENSAMXG00000041609	-	99	54.693	ENSAMXG00000042174	-	94	56.311
ENSAMXG00000041609	-	94	75.000	ENSAMXG00000029878	-	91	75.000
ENSAMXG00000041609	-	92	63.509	ENSAMXG00000039752	-	90	63.509
ENSAMXG00000041609	-	97	70.548	ENSAMXG00000030963	-	64	70.548
ENSAMXG00000041609	-	94	63.602	ENSAMXG00000029109	-	87	63.602
ENSAMXG00000041609	-	99	64.242	ENSAMXG00000040677	-	88	64.242
ENSAMXG00000041609	-	91	72.993	ENSAMXG00000038636	-	93	71.141
ENSAMXG00000041609	-	91	41.121	ENSAMXG00000038235	snai2	51	41.121
ENSAMXG00000041609	-	92	73.050	ENSAMXG00000041975	-	82	72.881
ENSAMXG00000041609	-	99	63.636	ENSAMXG00000037760	-	100	63.636
ENSAMXG00000041609	-	92	70.805	ENSAMXG00000039162	-	95	70.805
ENSAMXG00000041609	-	91	73.519	ENSAMXG00000008613	-	96	73.519
ENSAMXG00000041609	-	99	64.286	ENSAMXG00000009563	-	99	64.286
ENSAMXG00000041609	-	92	70.982	ENSAMXG00000031009	-	81	69.900
ENSAMXG00000041609	-	99	64.085	ENSAMXG00000042275	-	96	64.085
ENSAMXG00000041609	-	92	69.966	ENSAMXG00000031900	-	93	69.966
ENSAMXG00000041609	-	94	55.556	ENSAMXG00000042784	-	92	57.391
ENSAMXG00000041609	-	99	72.990	ENSAMXG00000034958	-	96	72.990
ENSAMXG00000041609	-	92	72.483	ENSAMXG00000036567	-	76	72.483
ENSAMXG00000041609	-	92	67.845	ENSAMXG00000038453	-	77	67.845
ENSAMXG00000041609	-	94	73.057	ENSAMXG00000035683	-	95	71.500
ENSAMXG00000041609	-	97	71.477	ENSAMXG00000011804	-	87	63.303
ENSAMXG00000041609	-	92	68.421	ENSAMXG00000031646	-	95	68.421
ENSAMXG00000041609	-	92	68.182	ENSAMXG00000031489	-	93	68.182
ENSAMXG00000041609	-	92	72.078	ENSAMXG00000007092	-	98	72.078
ENSAMXG00000041609	-	95	63.707	ENSAMXG00000037981	-	77	60.294
ENSAMXG00000041609	-	94	41.475	ENSAMXG00000042191	zbtb47a	74	41.475
ENSAMXG00000041609	-	99	69.153	ENSAMXG00000036233	-	82	65.831
ENSAMXG00000041609	-	99	35.065	ENSAMXG00000035525	znf646	77	31.302
ENSAMXG00000041609	-	94	64.286	ENSAMXG00000029161	-	90	64.286
ENSAMXG00000041609	-	94	37.143	ENSAMXG00000034158	scrt2	55	37.143
ENSAMXG00000041609	-	92	68.456	ENSAMXG00000030911	-	65	68.456
ENSAMXG00000041609	-	92	56.106	ENSAMXG00000012604	-	96	56.106
ENSAMXG00000041609	-	94	37.121	ENSAMXG00000038085	scrt1a	59	37.121
ENSAMXG00000041609	-	89	61.667	ENSAMXG00000043978	-	87	61.667
ENSAMXG00000041609	-	96	62.687	ENSAMXG00000042167	-	97	61.538
ENSAMXG00000041609	-	96	70.667	ENSAMXG00000003002	-	94	65.432
ENSAMXG00000041609	-	92	73.913	ENSAMXG00000039744	-	99	73.913
ENSAMXG00000041609	-	92	69.128	ENSAMXG00000000353	-	93	69.128
ENSAMXG00000041609	-	99	72.239	ENSAMXG00000040212	-	91	72.239
ENSAMXG00000041609	-	92	54.762	ENSAMXG00000038122	-	89	54.762
ENSAMXG00000041609	-	100	59.333	ENSAMXG00000040806	-	93	59.333
ENSAMXG00000041609	-	96	58.514	ENSAMXG00000038536	-	90	60.234
ENSAMXG00000041609	-	99	64.726	ENSAMXG00000036849	-	90	64.726
ENSAMXG00000041609	-	97	63.987	ENSAMXG00000037923	-	99	64.495
ENSAMXG00000041609	-	99	57.639	ENSAMXG00000033124	-	65	57.639
ENSAMXG00000041609	-	96	57.716	ENSAMXG00000042746	-	90	58.480
ENSAMXG00000041609	-	95	75.439	ENSAMXG00000029178	-	96	75.439
ENSAMXG00000041609	-	98	69.492	ENSAMXG00000010078	-	89	69.492
ENSAMXG00000041609	-	91	49.741	ENSAMXG00000014745	-	81	49.741
ENSAMXG00000041609	-	99	57.658	ENSAMXG00000026144	-	94	57.931
ENSAMXG00000041609	-	95	64.026	ENSAMXG00000026142	-	92	63.576
ENSAMXG00000041609	-	92	73.052	ENSAMXG00000037885	-	97	73.052
ENSAMXG00000041609	-	95	62.034	ENSAMXG00000044028	-	97	62.034
ENSAMXG00000041609	-	95	56.680	ENSAMXG00000034344	-	77	55.844
ENSAMXG00000041609	-	99	68.847	ENSAMXG00000035690	-	75	68.847
ENSAMXG00000041609	-	92	62.411	ENSAMXG00000043019	-	92	62.411
ENSAMXG00000041609	-	99	57.192	ENSAMXG00000026143	-	96	57.192
ENSAMXG00000041609	-	91	36.538	ENSAMXG00000042624	SCRT1	60	36.538
ENSAMXG00000041609	-	99	61.569	ENSAMXG00000031496	-	91	61.364
ENSAMXG00000041609	-	96	76.774	ENSAMXG00000035809	-	99	76.774
ENSAMXG00000041609	-	96	63.107	ENSAMXG00000044110	-	91	63.107
ENSAMXG00000041609	-	99	56.954	ENSAMXG00000043541	-	86	54.321
ENSAMXG00000041609	-	90	43.750	ENSAMXG00000044096	-	82	43.750
ENSAMXG00000041609	-	97	57.679	ENSAMXG00000032237	-	93	57.679
ENSAMXG00000041609	-	95	66.349	ENSAMXG00000032619	-	99	66.349
ENSAMXG00000041609	-	92	73.052	ENSAMXG00000043251	-	95	73.052
ENSAMXG00000041609	-	99	55.682	ENSAMXG00000029783	-	90	55.682
ENSAMXG00000041609	-	92	71.226	ENSAMXG00000032457	-	93	71.226
ENSAMXG00000041609	-	99	62.575	ENSAMXG00000031844	-	98	62.575
ENSAMXG00000041609	-	99	53.704	ENSAMXG00000034096	-	91	56.957
ENSAMXG00000041609	-	92	69.434	ENSAMXG00000035949	-	74	64.599
ENSAMXG00000041609	-	96	63.430	ENSAMXG00000040630	-	99	63.607
ENSAMXG00000041609	-	92	63.345	ENSAMXG00000030742	-	99	64.078
ENSAMXG00000041609	-	93	70.588	ENSAMXG00000039182	-	64	70.588
ENSAMXG00000041609	-	94	70.470	ENSAMXG00000041725	-	91	70.470
ENSAMXG00000041609	-	99	65.455	ENSAMXG00000041721	-	77	65.455
ENSAMXG00000041609	-	92	49.451	ENSAMXG00000033252	-	98	46.018
ENSAMXG00000041609	-	94	66.667	ENSAMXG00000042774	-	95	66.667
ENSAMXG00000041609	-	99	61.382	ENSAMXG00000039700	-	95	61.382
ENSAMXG00000041609	-	90	38.288	ENSAMXG00000044034	-	73	36.546
ENSAMXG00000041609	-	92	68.627	ENSAMXG00000041128	-	88	68.627
ENSAMXG00000041609	-	92	72.105	ENSAMXG00000004610	-	96	70.312
ENSAMXG00000041609	-	99	62.388	ENSAMXG00000042633	-	98	62.388
ENSAMXG00000041609	-	92	66.552	ENSAMXG00000039016	-	80	66.552
ENSAMXG00000041609	-	99	55.049	ENSAMXG00000038284	-	97	55.049
ENSAMXG00000041609	-	96	57.895	ENSAMXG00000038280	-	90	57.895
ENSAMXG00000041609	-	92	45.955	ENSAMXG00000012589	-	86	45.955
ENSAMXG00000041609	-	99	69.536	ENSAMXG00000031794	-	100	68.085
ENSAMXG00000041609	-	92	71.812	ENSAMXG00000031501	-	88	71.812
ENSAMXG00000041609	-	95	60.726	ENSAMXG00000034402	-	94	60.726
ENSAMXG00000041609	-	96	56.643	ENSAMXG00000034857	-	68	56.643
ENSAMXG00000041609	-	99	58.407	ENSAMXG00000042593	-	99	58.407
ENSAMXG00000041609	-	99	62.941	ENSAMXG00000036241	-	91	62.941
ENSAMXG00000041609	-	92	71.066	ENSAMXG00000035145	-	63	71.066
ENSAMXG00000041609	-	94	71.631	ENSAMXG00000036762	-	96	71.631
ENSAMXG00000041609	-	92	73.154	ENSAMXG00000025965	-	94	73.154
ENSAMXG00000041609	-	91	70.213	ENSAMXG00000029518	-	52	70.213
ENSAMXG00000041609	-	96	57.419	ENSAMXG00000030659	-	76	57.419
ENSAMXG00000041609	-	99	56.500	ENSAMXG00000031307	-	67	56.886
ENSAMXG00000041609	-	92	72.603	ENSAMXG00000041404	-	96	76.503
ENSAMXG00000041609	-	99	48.634	ENSAMXG00000007973	-	91	50.000
ENSAMXG00000041609	-	92	73.754	ENSAMXG00000018161	-	94	73.754
ENSAMXG00000041609	-	92	40.964	ENSAMXG00000007441	-	57	40.964
ENSAMXG00000041609	-	99	56.690	ENSAMXG00000012873	-	96	53.435
ENSAMXG00000041609	-	94	60.390	ENSAMXG00000039770	-	87	60.390
ENSAMXG00000041609	-	96	66.260	ENSAMXG00000042938	-	87	63.964
ENSAMXG00000041609	-	99	65.517	ENSAMXG00000035437	-	99	65.517
ENSAMXG00000041609	-	92	66.832	ENSAMXG00000039004	-	88	66.667
ENSAMXG00000041609	-	96	50.370	ENSAMXG00000035286	si:ch1073-224n8.1	84	42.584
ENSAMXG00000041609	-	95	65.505	ENSAMXG00000010930	-	82	68.792
ENSAMXG00000041609	-	92	36.612	ENSAMXG00000016921	znf341	51	36.612
ENSAMXG00000041609	-	90	44.848	ENSAMXG00000034934	-	80	44.848
ENSAMXG00000041609	-	98	55.720	ENSAMXG00000038905	-	94	53.356
ENSAMXG00000041609	-	94	42.929	ENSAMXG00000033299	-	70	42.929
ENSAMXG00000041609	-	99	76.415	ENSAMXG00000017609	-	79	76.415
ENSAMXG00000041609	-	100	74.561	ENSAMXG00000039977	-	98	74.561
ENSAMXG00000041609	-	94	60.396	ENSAMXG00000036915	-	97	59.091
ENSAMXG00000041609	-	96	68.000	ENSAMXG00000001626	-	96	64.026
ENSAMXG00000041609	-	96	42.063	ENSAMXG00000006669	GFI1	58	42.063
ENSAMXG00000041609	-	92	36.765	ENSAMXG00000005882	znf131	68	31.016
ENSAMXG00000041609	-	99	70.139	ENSAMXG00000034847	-	91	70.139
ENSAMXG00000041609	-	99	68.440	ENSAMXG00000039432	-	100	68.440
ENSAMXG00000041609	-	92	67.532	ENSAMXG00000009776	-	97	67.532
ENSAMXG00000041609	-	92	40.426	ENSAMXG00000025761	-	89	40.426
ENSAMXG00000041609	-	92	70.543	ENSAMXG00000033500	-	92	71.351
ENSAMXG00000041609	-	93	38.462	ENSAMXG00000033001	-	53	38.462
ENSAMXG00000041609	-	92	59.817	ENSAMXG00000036257	-	90	55.696
ENSAMXG00000041609	-	97	37.460	ENSAMXG00000024907	znf319b	87	37.460
ENSAMXG00000041609	-	99	61.818	ENSAMXG00000036633	-	66	61.786
ENSAMXG00000041609	-	98	70.089	ENSAMXG00000025452	-	100	70.089
ENSAMXG00000041609	-	92	73.519	ENSAMXG00000025455	-	98	73.519
ENSAMXG00000041609	-	92	65.677	ENSAMXG00000029828	-	97	65.677
ENSAMXG00000041609	-	99	70.448	ENSAMXG00000043423	-	80	70.448
ENSAMXG00000041609	-	99	62.927	ENSAMXG00000013274	-	95	62.927
ENSAMXG00000041609	-	96	38.624	ENSAMXG00000032845	-	56	38.624
ENSAMXG00000041609	-	100	62.719	ENSAMXG00000032841	-	84	62.719
ENSAMXG00000041609	-	99	63.475	ENSAMXG00000037717	-	97	63.475
ENSAMXG00000041609	-	92	61.224	ENSAMXG00000043302	-	72	61.224
ENSAMXG00000041609	-	93	61.066	ENSAMXG00000044107	-	89	57.692
ENSAMXG00000041609	-	94	52.830	ENSAMXG00000043178	-	74	52.830
ENSAMXG00000041609	-	98	61.842	ENSAMXG00000010805	-	98	61.842
ENSAMXG00000041609	-	96	64.455	ENSAMXG00000043291	-	66	64.455

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000041609	-	93	38.532	ENSAPEG00000021575	-	59	38.532	Amphiprion_percula
ENSAMXG00000041609	-	92	42.296	ENSACLG00000017925	-	69	42.296	Astatotilapia_calliptera
ENSAMXG00000041609	-	91	54.723	ENSCSAVG00000007918	-	99	54.723	Ciona_savignyi
ENSAMXG00000041609	-	92	47.586	ENSHBUG00000002307	-	70	45.238	Haplochromis_burtoni
ENSAMXG00000041609	-	99	45.565	ENSHBUG00000012007	-	76	45.565	Haplochromis_burtoni
ENSAMXG00000041609	-	92	42.296	ENSMZEG00005024424	-	69	42.296	Maylandia_zebra
ENSAMXG00000041609	-	92	42.731	ENSOANG00000005971	-	71	42.731	Ornithorhynchus_anatinus
ENSAMXG00000041609	-	92	45.745	ENSPMEG00000014701	-	64	45.745	Poecilia_mexicana
ENSAMXG00000041609	-	94	42.857	ENSSDUG00000002174	-	72	42.857	Seriola_dumerili
ENSAMXG00000041609	-	94	42.857	ENSSLDG00000002776	-	72	42.857	Seriola_lalandi_dorsalis
ENSAMXG00000041609	-	96	52.985	ENSSLDG00000010390	-	89	51.770	Seriola_lalandi_dorsalis
ENSAMXG00000041609	-	93	57.407	ENSSPAG00000008958	-	82	57.407	Stegastes_partitus
ENSAMXG00000041609	-	95	50.168	ENSTGUG00000015090	-	99	50.168	Taeniopygia_guttata