EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000041683 (Gene tree)
Gene ID: 103043827
Gene Symbol: gpatch8
Alias: fa12a04|fb30h12|gpatc8|wu:fa12a04|wu:fb30h12|wu:fj32a09
Full Name: G-patch domain containing 8
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 79618 bases
Position: chr2:7939115-8018732
Accession: 103043827
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000045895	zf-C2H2_jaz	PF12171.8	3.7e-06	1	1
ENSAMXP00000033754	zf-C2H2_jaz	PF12171.8	3.8e-06	1	1
ENSAMXP00000038425	zf-C2H2_jaz	PF12171.8	3.9e-06	1	1
ENSAMXP00000030028	zf-C2H2_jaz	PF12171.8	4e-06	1	1
ENSAMXP00000038425	G-patch	PF01585.23	1.2e-12	1	1
ENSAMXP00000030028	G-patch	PF01585.23	1.2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000040710	-	4722	-	ENSAMXP00000038425	1573 (aa)	-	-
ENSAMXT00000035591	-	4633	XM_007229941	ENSAMXP00000033754	1515 (aa)	XP_007230003	UPI000BBD9F3A
ENSAMXT00000054801	-	4855	XM_007229939	ENSAMXP00000030028	1578 (aa)	XP_007230001	UPI000BBD9D93
ENSAMXT00000043054	-	4656	XM_015605828	ENSAMXP00000045895	1499 (aa)	XP_015461314	UPI000BBD6D59

Gene Model

Click here to download ENSAMXG00000041683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000041683's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000041683	gpatch8	57	64.159	ENSAPOG00000023938	gpatch8	59	60.874	Acanthochromis_polyacanthus
ENSAMXG00000041683	gpatch8	57	63.978	ENSAOCG00000018102	gpatch8	99	63.281	Amphiprion_ocellaris
ENSAMXG00000041683	gpatch8	57	64.088	ENSAPEG00000016776	gpatch8	99	63.128	Amphiprion_percula
ENSAMXG00000041683	gpatch8	57	60.951	ENSATEG00000003247	gpatch8	100	63.033	Anabas_testudineus
ENSAMXG00000041683	gpatch8	57	62.130	ENSACLG00000004165	gpatch8	59	60.534	Astatotilapia_calliptera
ENSAMXG00000041683	gpatch8	72	57.753	ENSCLAG00000016710	GPATCH8	72	56.329	Chinchilla_lanigera
ENSAMXG00000041683	gpatch8	100	69.090	ENSDARG00000059768	gpatch8	59	65.892	Danio_rerio
ENSAMXG00000041683	gpatch8	57	59.276	ENSELUG00000019920	gpatch8	60	58.811	Esox_lucius
ENSAMXG00000041683	gpatch8	56	61.581	ENSFHEG00000005791	gpatch8	99	62.468	Fundulus_heteroclitus
ENSAMXG00000041683	gpatch8	56	59.513	ENSGAFG00000018138	gpatch8	76	59.398	Gambusia_affinis
ENSAMXG00000041683	gpatch8	57	62.459	ENSHBUG00000002669	gpatch8	59	60.246	Haplochromis_burtoni
ENSAMXG00000041683	gpatch8	74	55.644	ENSHGLG00100010738	GPATCH8	75	60.331	Heterocephalus_glaber_male
ENSAMXG00000041683	gpatch8	100	77.001	ENSIPUG00000015431	gpatch8	100	75.394	Ictalurus_punctatus
ENSAMXG00000041683	gpatch8	61	77.586	ENSLOCG00000012265	gpatch8	73	71.631	Lepisosteus_oculatus
ENSAMXG00000041683	gpatch8	57	62.239	ENSMZEG00005022584	gpatch8	59	60.637	Maylandia_zebra
ENSAMXG00000041683	gpatch8	57	61.301	ENSMALG00000004204	gpatch8	59	60.104	Monopterus_albus
ENSAMXG00000041683	gpatch8	51	61.143	ENSMLUG00000013840	GPATCH8	53	63.253	Myotis_lucifugus
ENSAMXG00000041683	gpatch8	57	61.732	ENSNBRG00000016402	gpatch8	59	60.270	Neolamprologus_brichardi
ENSAMXG00000041683	gpatch8	56	58.571	ENSOMEG00000023809	gpatch8	59	59.294	Oryzias_melastigma
ENSAMXG00000041683	gpatch8	52	79.487	ENSPKIG00000018753	gpatch8	90	59.345	Paramormyrops_kingsleyae
ENSAMXG00000041683	gpatch8	56	60.000	ENSPFOG00000014833	gpatch8	52	64.908	Poecilia_formosa
ENSAMXG00000041683	gpatch8	56	59.474	ENSPLAG00000001035	gpatch8	52	65.276	Poecilia_latipinna
ENSAMXG00000041683	gpatch8	56	60.265	ENSPREG00000008911	gpatch8	56	65.366	Poecilia_reticulata
ENSAMXG00000041683	gpatch8	57	62.020	ENSPNYG00000009426	gpatch8	59	60.432	Pundamilia_nyererei
ENSAMXG00000041683	gpatch8	93	83.129	ENSPNAG00000016200	gpatch8	97	83.265	Pygocentrus_nattereri
ENSAMXG00000041683	gpatch8	56	54.135	ENSSFOG00015021377	-	56	79.751	Scleropages_formosus
ENSAMXG00000041683	gpatch8	88	59.964	ENSSFOG00015004299	GPATCH8	56	81.931	Scleropages_formosus
ENSAMXG00000041683	gpatch8	55	60.306	ENSSDUG00000018065	gpatch8	57	58.472	Seriola_dumerili
ENSAMXG00000041683	gpatch8	56	63.048	ENSSLDG00000009225	gpatch8	96	62.111	Seriola_lalandi_dorsalis
ENSAMXG00000041683	gpatch8	57	59.567	ENSTBEG00000009486	GPATCH8	56	59.636	Tupaia_belangeri
ENSAMXG00000041683	gpatch8	84	51.937	ENSXETG00000008843	gpatch8	56	63.922	Xenopus_tropicalis