EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000041694 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 5664 bases
Position: chr23:4189314-4194977
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000042735	RVT_1	PF00078.27	5.4e-30	1	1
ENSAMXP00000033622	RVT_1	PF00078.27	6.3e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000054789	-	4692	-	ENSAMXP00000033622	1017 (aa)	-	-
ENSAMXT00000032405	-	3219	-	ENSAMXP00000042735	916 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000041694's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000041694's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000041694	-	73	58.488	ENSAMXG00000031305	-	72	58.488
ENSAMXG00000041694	-	65	44.671	ENSAMXG00000030934	-	96	44.671
ENSAMXG00000041694	-	69	46.586	ENSAMXG00000036897	-	90	46.586
ENSAMXG00000041694	-	99	51.699	ENSAMXG00000040149	-	66	51.336
ENSAMXG00000041694	-	62	48.908	ENSAMXG00000029689	-	79	48.908
ENSAMXG00000041694	-	69	45.630	ENSAMXG00000033831	-	85	45.778
ENSAMXG00000041694	-	96	53.286	ENSAMXG00000033138	-	70	53.286
ENSAMXG00000041694	-	73	56.366	ENSAMXG00000042521	-	59	56.366
ENSAMXG00000041694	-	98	51.260	ENSAMXG00000036523	-	61	51.357
ENSAMXG00000041694	-	60	49.744	ENSAMXG00000043875	-	84	49.915
ENSAMXG00000041694	-	97	52.563	ENSAMXG00000042699	-	88	52.556
ENSAMXG00000041694	-	98	56.250	ENSAMXG00000040915	-	95	51.847
ENSAMXG00000041694	-	64	44.304	ENSAMXG00000038544	-	93	44.304
ENSAMXG00000041694	-	62	61.746	ENSAMXG00000037157	-	73	61.746
ENSAMXG00000041694	-	98	53.073	ENSAMXG00000040104	-	61	53.073
ENSAMXG00000041694	-	94	54.667	ENSAMXG00000040695	-	66	54.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000041694	-	99	51.249	ENSDARG00000111789	BX571665.1	68	50.977	Danio_rerio
ENSAMXG00000041694	-	99	51.900	ENSDARG00000115891	CR533578.1	68	51.562	Danio_rerio
ENSAMXG00000041694	-	99	51.792	ENSDARG00000114395	CU929458.1	68	51.465	Danio_rerio
ENSAMXG00000041694	-	96	45.125	ENSKMAG00000007139	-	69	46.053	Kryptolebias_marmoratus
ENSAMXG00000041694	-	99	42.888	ENSORLG00000027396	-	70	43.385	Oryzias_latipes
ENSAMXG00000041694	-	96	44.444	ENSORLG00020019993	-	98	44.423	Oryzias_latipes_hni
ENSAMXG00000041694	-	97	45.435	ENSORLG00015020336	-	97	45.260	Oryzias_latipes_hsok
ENSAMXG00000041694	-	98	43.445	ENSORLG00015015202	-	81	43.699	Oryzias_latipes_hsok