EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000041879 (Gene tree)
Gene ID: 103034073
Gene Symbol: ovol1b
Alias: si:dkey-17e16.13
Full Name: putative transcription factor Ovo-like 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 6835 bases
Position: chr14:5719822-5726656
Accession: 103034073
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000051491	zf-C2H2	PF00096.26	2e-16	1	3
ENSAMXP00000051491	zf-C2H2	PF00096.26	2e-16	2	3
ENSAMXP00000051491	zf-C2H2	PF00096.26	2e-16	3	3
ENSAMXP00000051491	zf-met	PF12874.7	9.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000047231	-	4310	XM_015607098	ENSAMXP00000051491	285 (aa)	XP_015462584	UPI000BBD8D51

Gene Model

Click here to download ENSAMXG00000041879's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000041879's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000041879	ovol1b	74	35.106	ENSAMXG00000034158	scrt2	74	35.106
ENSAMXG00000041879	ovol1b	61	38.462	ENSAMXG00000037544	GFI1B	50	38.462
ENSAMXG00000041879	ovol1b	67	32.663	ENSAMXG00000033252	-	98	32.663
ENSAMXG00000041879	ovol1b	88	45.139	ENSAMXG00000011046	ovol1a	98	44.582
ENSAMXG00000041879	ovol1b	60	36.364	ENSAMXG00000044028	-	96	34.722
ENSAMXG00000041879	ovol1b	53	32.353	ENSAMXG00000033001	-	56	32.353
ENSAMXG00000041879	ovol1b	61	36.283	ENSAMXG00000030659	-	87	36.283

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000041879	ovol1b	98	47.040	ENSDARG00000076472	ovol1a	99	47.040	Danio_rerio
ENSAMXG00000041879	ovol1b	96	52.941	ENSDARG00000078256	ovol1b	99	52.941	Danio_rerio
ENSAMXG00000041879	ovol1b	88	45.338	ENSELUG00000000343	ovol1a	98	43.149	Esox_lucius
ENSAMXG00000041879	ovol1b	89	44.737	ENSFHEG00000002773	-	98	42.433	Fundulus_heteroclitus
ENSAMXG00000041879	ovol1b	88	46.063	ENSGACG00000018794	ovol1a	98	42.612	Gasterosteus_aculeatus
ENSAMXG00000041879	ovol1b	98	41.284	ENSHCOG00000015860	ovol1a	98	41.284	Hippocampus_comes
ENSAMXG00000041879	ovol1b	87	45.118	ENSKMAG00000002605	-	99	41.935	Kryptolebias_marmoratus
ENSAMXG00000041879	ovol1b	87	42.953	ENSMAMG00000009768	ovol1a	98	42.398	Mastacembelus_armatus
ENSAMXG00000041879	ovol1b	98	41.420	ENSMALG00000008421	ovol1a	98	41.420	Monopterus_albus
ENSAMXG00000041879	ovol1b	91	50.562	ENSPKIG00000024718	ovol1a	87	50.562	Paramormyrops_kingsleyae
ENSAMXG00000041879	ovol1b	98	43.195	ENSPFOG00000008841	-	97	43.820	Poecilia_formosa
ENSAMXG00000041879	ovol1b	89	69.565	ENSPNAG00000016198	ovol1b	94	69.565	Pygocentrus_nattereri
ENSAMXG00000041879	ovol1b	96	46.203	ENSPNAG00000020630	ovol1a	96	46.203	Pygocentrus_nattereri
ENSAMXG00000041879	ovol1b	88	43.182	ENSSDUG00000009846	ovol1a	91	42.769	Seriola_dumerili