EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000042187 (Gene tree)
Gene ID: 103031971
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 20610 bases
Position: chr17:8494803-8515412
Accession: 103031971
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000051219	UPF1_Zn_bind	PF09416.10	9.1e-75	1	1
ENSAMXP00000051219	ResIII	PF04851.15	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000034815	-	4507	XM_022678828	ENSAMXP00000051219	1100 (aa)	XP_022534549	UPI000BBDAF9C

Gene Model

Click here to download ENSAMXG00000042187's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03013	RNA transport	KEGG
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000042187's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000042187	upf1	100	93.405	ENSG00000005007	UPF1	100	92.959	Homo_sapiens
ENSAMXG00000042187	upf1	100	94.389	ENSAPOG00000023773	upf1	100	94.389	Acanthochromis_polyacanthus
ENSAMXG00000042187	upf1	100	95.104	ENSAPOG00000010916	-	100	94.923	Acanthochromis_polyacanthus
ENSAMXG00000042187	upf1	100	93.079	ENSAMEG00000011474	UPF1	100	92.635	Ailuropoda_melanoleuca
ENSAMXG00000042187	upf1	93	94.547	ENSACIG00000010985	-	100	94.358	Amphilophus_citrinellus
ENSAMXG00000042187	upf1	100	94.661	ENSACIG00000019949	upf1	100	94.818	Amphilophus_citrinellus
ENSAMXG00000042187	upf1	100	95.195	ENSAOCG00000006352	-	100	95.014	Amphiprion_ocellaris
ENSAMXG00000042187	upf1	100	93.909	ENSAOCG00000018519	upf1	100	93.986	Amphiprion_ocellaris
ENSAMXG00000042187	upf1	100	95.195	ENSAPEG00000006292	-	100	95.014	Amphiprion_percula
ENSAMXG00000042187	upf1	100	93.909	ENSAPEG00000016344	upf1	100	93.986	Amphiprion_percula
ENSAMXG00000042187	upf1	100	93.316	ENSATEG00000017867	upf1	100	93.728	Anabas_testudineus
ENSAMXG00000042187	upf1	100	95.104	ENSATEG00000016606	-	100	94.923	Anabas_testudineus
ENSAMXG00000042187	upf1	95	95.265	ENSAPLG00000009175	UPF1	100	94.697	Anas_platyrhynchos
ENSAMXG00000042187	upf1	95	92.918	ENSANAG00000024107	UPF1	96	92.351	Aotus_nancymaae
ENSAMXG00000042187	upf1	100	94.480	ENSACLG00000007181	upf1	100	94.636	Astatotilapia_calliptera
ENSAMXG00000042187	upf1	100	94.374	ENSACLG00000022630	-	100	94.828	Astatotilapia_calliptera
ENSAMXG00000042187	upf1	100	93.091	ENSBTAG00000020922	UPF1	100	92.648	Bos_taurus
ENSAMXG00000042187	upf1	81	54.596	WBGene00004880	smg-2	83	54.374	Caenorhabditis_elegans
ENSAMXG00000042187	upf1	100	92.668	ENSCJAG00000019627	UPF1	100	92.226	Callithrix_jacchus
ENSAMXG00000042187	upf1	100	92.845	ENSCAFG00000014578	UPF1	100	92.403	Canis_familiaris
ENSAMXG00000042187	upf1	100	93.583	ENSCAFG00020012347	UPF1	100	93.137	Canis_lupus_dingo
ENSAMXG00000042187	upf1	100	93.834	ENSCHIG00000011018	UPF1	100	93.387	Capra_hircus
ENSAMXG00000042187	upf1	95	94.587	ENSTSYG00000008877	UPF1	98	94.017	Carlito_syrichta
ENSAMXG00000042187	upf1	96	93.709	ENSCAPG00000005758	UPF1	95	93.827	Cavia_aperea
ENSAMXG00000042187	upf1	100	93.621	ENSCPOG00000025463	UPF1	100	93.082	Cavia_porcellus
ENSAMXG00000042187	upf1	100	93.405	ENSCCAG00000032175	UPF1	100	92.959	Cebus_capucinus
ENSAMXG00000042187	upf1	94	94.852	ENSCATG00000040306	UPF1	98	94.112	Cercocebus_atys
ENSAMXG00000042187	upf1	95	94.777	ENSCLAG00000004037	UPF1	99	94.207	Chinchilla_lanigera
ENSAMXG00000042187	upf1	100	93.405	ENSCSAG00000005276	UPF1	100	92.959	Chlorocebus_sabaeus
ENSAMXG00000042187	upf1	100	93.817	ENSCPBG00000012513	UPF1	100	93.280	Chrysemys_picta_bellii
ENSAMXG00000042187	upf1	77	79.719	ENSCING00000021399	-	99	79.484	Ciona_intestinalis
ENSAMXG00000042187	upf1	99	72.392	ENSCSAVG00000006533	-	99	71.928	Ciona_savignyi
ENSAMXG00000042187	upf1	95	94.777	ENSCANG00000029819	UPF1	97	94.207	Colobus_angolensis_palliatus
ENSAMXG00000042187	upf1	100	93.286	ENSCGRG00001021067	Upf1	100	92.838	Cricetulus_griseus_chok1gshd
ENSAMXG00000042187	upf1	95	94.207	ENSCGRG00000013480	Upf1	98	93.637	Cricetulus_griseus_crigri
ENSAMXG00000042187	upf1	100	94.737	ENSCSEG00000016159	-	100	94.192	Cynoglossus_semilaevis
ENSAMXG00000042187	upf1	100	88.657	ENSCSEG00000017239	upf1	100	88.018	Cynoglossus_semilaevis
ENSAMXG00000042187	upf1	100	93.835	ENSCVAG00000010561	upf1	100	94.288	Cyprinodon_variegatus
ENSAMXG00000042187	upf1	100	98.909	ENSDARG00000016302	upf1	100	98.909	Danio_rerio
ENSAMXG00000042187	upf1	95	92.220	ENSDORG00000009984	Upf1	95	91.651	Dipodomys_ordii
ENSAMXG00000042187	upf1	85	72.495	FBgn0030354	Upf1	81	71.369	Drosophila_melanogaster
ENSAMXG00000042187	upf1	54	86.446	ENSEBUG00000010069	upf1	96	86.777	Eptatretus_burgeri
ENSAMXG00000042187	upf1	100	93.744	ENSEASG00005006549	UPF1	100	93.298	Equus_asinus_asinus
ENSAMXG00000042187	upf1	100	93.744	ENSECAG00000010639	UPF1	100	93.298	Equus_caballus
ENSAMXG00000042187	upf1	100	94.480	ENSELUG00000020917	upf1	100	93.484	Esox_lucius
ENSAMXG00000042187	upf1	100	93.857	ENSELUG00000012916	-	100	94.399	Esox_lucius
ENSAMXG00000042187	upf1	100	92.845	ENSFCAG00000009757	UPF1	100	92.403	Felis_catus
ENSAMXG00000042187	upf1	95	95.619	ENSFALG00000009312	UPF1	96	95.048	Ficedula_albicollis
ENSAMXG00000042187	upf1	95	94.682	ENSFDAG00000014816	UPF1	99	94.112	Fukomys_damarensis
ENSAMXG00000042187	upf1	100	91.367	ENSFHEG00000006428	upf1	100	90.412	Fundulus_heteroclitus
ENSAMXG00000042187	upf1	86	94.565	ENSFHEG00000016276	-	96	94.203	Fundulus_heteroclitus
ENSAMXG00000042187	upf1	100	93.178	ENSGMOG00000007541	upf1	100	93.447	Gadus_morhua
ENSAMXG00000042187	upf1	100	93.839	ENSGALG00000003220	UPF1	100	93.214	Gallus_gallus
ENSAMXG00000042187	upf1	63	95.540	ENSGAFG00000015443	-	85	95.540	Gambusia_affinis
ENSAMXG00000042187	upf1	100	93.835	ENSGAFG00000004831	upf1	100	94.288	Gambusia_affinis
ENSAMXG00000042187	upf1	100	94.419	ENSGAGG00000022217	UPF1	100	93.969	Gopherus_agassizii
ENSAMXG00000042187	upf1	95	95.590	ENSGGOG00000002608	UPF1	99	95.014	Gorilla_gorilla
ENSAMXG00000042187	upf1	89	93.590	ENSHBUG00000014694	upf1	100	93.590	Haplochromis_burtoni
ENSAMXG00000042187	upf1	86	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSAMXG00000042187	upf1	100	92.403	ENSHGLG00000010900	UPF1	100	91.961	Heterocephalus_glaber_female
ENSAMXG00000042187	upf1	95	92.783	ENSHGLG00100005904	UPF1	96	92.213	Heterocephalus_glaber_male
ENSAMXG00000042187	upf1	100	94.651	ENSHCOG00000008918	upf1	100	94.651	Hippocampus_comes
ENSAMXG00000042187	upf1	100	99.273	ENSIPUG00000005108	UPF1	100	99.273	Ictalurus_punctatus
ENSAMXG00000042187	upf1	100	93.405	ENSSTOG00000009196	UPF1	100	92.959	Ictidomys_tridecemlineatus
ENSAMXG00000042187	upf1	100	92.444	ENSJJAG00000023151	Upf1	100	92.000	Jaculus_jaculus
ENSAMXG00000042187	upf1	100	93.926	ENSKMAG00000004962	upf1	100	94.379	Kryptolebias_marmoratus
ENSAMXG00000042187	upf1	100	93.088	ENSLBEG00000014862	upf1	100	93.178	Labrus_bergylta
ENSAMXG00000042187	upf1	100	94.923	ENSLBEG00000027848	-	100	94.742	Labrus_bergylta
ENSAMXG00000042187	upf1	63	96.418	ENSLACG00000008482	UPF1	100	95.989	Latimeria_chalumnae
ENSAMXG00000042187	upf1	100	97.187	ENSLOCG00000002072	upf1	100	97.187	Lepisosteus_oculatus
ENSAMXG00000042187	upf1	100	92.566	ENSLAFG00000014963	UPF1	100	92.124	Loxodonta_africana
ENSAMXG00000042187	upf1	100	93.327	ENSMFAG00000037748	UPF1	100	92.883	Macaca_fascicularis
ENSAMXG00000042187	upf1	100	93.079	ENSMMUG00000023286	UPF1	100	92.635	Macaca_mulatta
ENSAMXG00000042187	upf1	100	93.327	ENSMNEG00000000046	UPF1	100	92.883	Macaca_nemestrina
ENSAMXG00000042187	upf1	95	94.777	ENSMLEG00000028404	UPF1	99	94.207	Mandrillus_leucophaeus
ENSAMXG00000042187	upf1	100	94.832	ENSMAMG00000006231	-	100	94.651	Mastacembelus_armatus
ENSAMXG00000042187	upf1	100	93.100	ENSMAMG00000006229	upf1	100	93.638	Mastacembelus_armatus
ENSAMXG00000042187	upf1	100	94.374	ENSMZEG00005016386	-	100	94.828	Maylandia_zebra
ENSAMXG00000042187	upf1	100	93.470	ENSMZEG00005003489	upf1	100	94.149	Maylandia_zebra
ENSAMXG00000042187	upf1	95	94.782	ENSMGAG00000004745	UPF1	100	94.213	Meleagris_gallopavo
ENSAMXG00000042187	upf1	95	94.207	ENSMAUG00000011398	Upf1	95	93.637	Mesocricetus_auratus
ENSAMXG00000042187	upf1	100	93.316	ENSMICG00000001659	UPF1	100	92.870	Microcebus_murinus
ENSAMXG00000042187	upf1	100	92.547	ENSMOCG00000005699	Upf1	100	92.192	Microtus_ochrogaster
ENSAMXG00000042187	upf1	100	93.909	ENSMMOG00000007881	upf1	100	94.000	Mola_mola
ENSAMXG00000042187	upf1	95	92.550	ENSMMOG00000007537	-	99	92.359	Mola_mola
ENSAMXG00000042187	upf1	100	92.599	ENSMODG00000003689	UPF1	100	92.247	Monodelphis_domestica
ENSAMXG00000042187	upf1	100	93.909	ENSMALG00000000144	upf1	100	94.182	Monopterus_albus
ENSAMXG00000042187	upf1	100	93.586	ENSMALG00000018100	-	100	93.406	Monopterus_albus
ENSAMXG00000042187	upf1	100	93.196	MGP_CAROLIEiJ_G0031142	Upf1	100	92.748	Mus_caroli
ENSAMXG00000042187	upf1	100	93.196	ENSMUSG00000058301	Upf1	100	92.748	Mus_musculus
ENSAMXG00000042187	upf1	100	93.196	MGP_PahariEiJ_G0021607	Upf1	100	92.748	Mus_pahari
ENSAMXG00000042187	upf1	100	93.196	MGP_SPRETEiJ_G0032260	Upf1	100	92.748	Mus_spretus
ENSAMXG00000042187	upf1	100	93.583	ENSMPUG00000015516	UPF1	100	93.137	Mustela_putorius_furo
ENSAMXG00000042187	upf1	99	93.381	ENSMLUG00000012122	UPF1	99	92.934	Myotis_lucifugus
ENSAMXG00000042187	upf1	100	92.212	ENSNGAG00000024107	Upf1	100	91.770	Nannospalax_galili
ENSAMXG00000042187	upf1	100	90.901	ENSNBRG00000022069	-	100	94.180	Neolamprologus_brichardi
ENSAMXG00000042187	upf1	100	92.760	ENSNBRG00000000670	upf1	100	92.909	Neolamprologus_brichardi
ENSAMXG00000042187	upf1	95	88.984	ENSNLEG00000006062	UPF1	99	88.414	Nomascus_leucogenys
ENSAMXG00000042187	upf1	83	89.844	ENSMEUG00000014146	-	83	88.672	Notamacropus_eugenii
ENSAMXG00000042187	upf1	95	88.495	ENSOPRG00000014018	UPF1	99	87.919	Ochotona_princeps
ENSAMXG00000042187	upf1	100	93.795	ENSODEG00000012426	UPF1	100	93.255	Octodon_degus
ENSAMXG00000042187	upf1	100	93.470	ENSONIG00000010452	upf1	100	94.149	Oreochromis_niloticus
ENSAMXG00000042187	upf1	100	94.374	ENSONIG00000012729	-	100	94.828	Oreochromis_niloticus
ENSAMXG00000042187	upf1	100	92.920	ENSOANG00000004568	UPF1	100	92.212	Ornithorhynchus_anatinus
ENSAMXG00000042187	upf1	100	94.742	ENSORLG00000008453	upf1	100	94.560	Oryzias_latipes
ENSAMXG00000042187	upf1	100	94.656	ENSORLG00020014758	upf1	100	94.475	Oryzias_latipes_hni
ENSAMXG00000042187	upf1	100	94.656	ENSORLG00015010165	upf1	100	94.475	Oryzias_latipes_hsok
ENSAMXG00000042187	upf1	100	94.832	ENSOMEG00000003665	upf1	100	94.651	Oryzias_melastigma
ENSAMXG00000042187	upf1	100	93.494	ENSOGAG00000012866	UPF1	100	93.048	Otolemur_garnettii
ENSAMXG00000042187	upf1	96	92.004	ENSOARG00000010739	UPF1	100	91.268	Ovis_aries
ENSAMXG00000042187	upf1	95	94.777	ENSPPAG00000043884	UPF1	96	94.207	Pan_paniscus
ENSAMXG00000042187	upf1	100	92.845	ENSPPRG00000023470	UPF1	100	92.403	Panthera_pardus
ENSAMXG00000042187	upf1	95	93.589	ENSPTIG00000010159	UPF1	99	93.014	Panthera_tigris_altaica
ENSAMXG00000042187	upf1	100	93.327	ENSPTRG00000010721	UPF1	100	92.883	Pan_troglodytes
ENSAMXG00000042187	upf1	100	93.327	ENSPANG00000008847	UPF1	100	92.883	Papio_anubis
ENSAMXG00000042187	upf1	91	96.822	ENSPKIG00000006069	upf1	97	96.822	Paramormyrops_kingsleyae
ENSAMXG00000042187	upf1	70	94.654	ENSPSIG00000009491	UPF1	100	93.872	Pelodiscus_sinensis
ENSAMXG00000042187	upf1	100	92.928	ENSPMGG00000017327	upf1	100	92.928	Periophthalmus_magnuspinnatus
ENSAMXG00000042187	upf1	100	92.547	ENSPEMG00000001085	Upf1	100	92.103	Peromyscus_maniculatus_bairdii
ENSAMXG00000042187	upf1	100	88.018	ENSPMAG00000001206	upf1	100	87.556	Petromyzon_marinus
ENSAMXG00000042187	upf1	100	93.845	ENSPCIG00000006156	UPF1	100	93.399	Phascolarctos_cinereus
ENSAMXG00000042187	upf1	100	93.654	ENSPLAG00000016232	-	100	93.841	Poecilia_latipinna
ENSAMXG00000042187	upf1	100	92.876	ENSPLAG00000018155	-	100	91.975	Poecilia_latipinna
ENSAMXG00000042187	upf1	100	93.194	ENSPMEG00000011443	-	100	92.636	Poecilia_mexicana
ENSAMXG00000042187	upf1	100	93.744	ENSPMEG00000016319	-	100	93.931	Poecilia_mexicana
ENSAMXG00000042187	upf1	100	92.709	ENSPREG00000009940	upf1	100	91.989	Poecilia_reticulata
ENSAMXG00000042187	upf1	100	93.472	ENSPREG00000011247	-	100	93.659	Poecilia_reticulata
ENSAMXG00000042187	upf1	100	87.721	ENSPPYG00000009752	UPF1	100	87.367	Pongo_abelii
ENSAMXG00000042187	upf1	75	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSAMXG00000042187	upf1	100	93.250	ENSPCOG00000023813	UPF1	100	92.806	Propithecus_coquereli
ENSAMXG00000042187	upf1	68	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSAMXG00000042187	upf1	100	94.374	ENSPNYG00000016731	-	100	94.828	Pundamilia_nyererei
ENSAMXG00000042187	upf1	100	93.470	ENSPNYG00000003694	upf1	100	94.149	Pundamilia_nyererei
ENSAMXG00000042187	upf1	100	99.545	ENSPNAG00000025614	upf1	100	99.545	Pygocentrus_nattereri
ENSAMXG00000042187	upf1	100	93.196	ENSRNOG00000020134	Upf1	100	92.748	Rattus_norvegicus
ENSAMXG00000042187	upf1	95	92.403	ENSRBIG00000013894	UPF1	98	94.978	Rhinopithecus_bieti
ENSAMXG00000042187	upf1	95	94.777	ENSRROG00000040935	UPF1	98	94.978	Rhinopithecus_roxellana
ENSAMXG00000042187	upf1	73	57.697	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSAMXG00000042187	upf1	95	94.772	ENSSBOG00000023632	UPF1	96	94.202	Saimiri_boliviensis_boliviensis
ENSAMXG00000042187	upf1	95	94.976	ENSSHAG00000010499	UPF1	100	94.408	Sarcophilus_harrisii
ENSAMXG00000042187	upf1	100	97.368	ENSSFOG00015021095	upf1	100	97.368	Scleropages_formosus
ENSAMXG00000042187	upf1	100	92.460	ENSSMAG00000005055	upf1	100	92.549	Scophthalmus_maximus
ENSAMXG00000042187	upf1	100	95.376	ENSSMAG00000021018	-	100	95.195	Scophthalmus_maximus
ENSAMXG00000042187	upf1	100	93.280	ENSSDUG00000013320	upf1	100	93.817	Seriola_dumerili
ENSAMXG00000042187	upf1	100	95.286	ENSSDUG00000009629	-	100	95.104	Seriola_dumerili
ENSAMXG00000042187	upf1	100	94.123	ENSSLDG00000020868	upf1	100	94.404	Seriola_lalandi_dorsalis
ENSAMXG00000042187	upf1	100	95.286	ENSSLDG00000006878	-	100	95.104	Seriola_lalandi_dorsalis
ENSAMXG00000042187	upf1	100	94.160	ENSSPUG00000010538	UPF1	100	93.711	Sphenodon_punctatus
ENSAMXG00000042187	upf1	100	94.379	ENSSPAG00000011521	-	100	94.379	Stegastes_partitus
ENSAMXG00000042187	upf1	100	92.656	ENSSPAG00000000003	upf1	100	92.287	Stegastes_partitus
ENSAMXG00000042187	upf1	100	93.744	ENSSSCG00000039301	UPF1	99	95.024	Sus_scrofa
ENSAMXG00000042187	upf1	82	88.191	ENSTGUG00000001057	UPF1	100	92.456	Taeniopygia_guttata
ENSAMXG00000042187	upf1	100	92.954	ENSTRUG00000005131	-	100	93.835	Takifugu_rubripes
ENSAMXG00000042187	upf1	100	93.818	ENSTRUG00000000150	upf1	100	93.636	Takifugu_rubripes
ENSAMXG00000042187	upf1	100	90.080	ENSTTRG00000011544	UPF1	100	89.544	Tursiops_truncatus
ENSAMXG00000042187	upf1	100	93.583	ENSUAMG00000007093	UPF1	100	93.137	Ursus_americanus
ENSAMXG00000042187	upf1	99	91.916	ENSUMAG00000006652	UPF1	99	95.553	Ursus_maritimus
ENSAMXG00000042187	upf1	100	93.583	ENSVVUG00000007797	UPF1	100	93.137	Vulpes_vulpes
ENSAMXG00000042187	upf1	100	80.722	ENSXETG00000013602	upf1	100	80.106	Xenopus_tropicalis
ENSAMXG00000042187	upf1	97	92.568	ENSXCOG00000015275	-	96	92.575	Xiphophorus_couchianus
ENSAMXG00000042187	upf1	94	94.385	ENSXCOG00000005764	-	99	94.869	Xiphophorus_couchianus
ENSAMXG00000042187	upf1	100	92.727	ENSXMAG00000001703	-	100	92.734	Xiphophorus_maculatus
ENSAMXG00000042187	upf1	100	94.016	ENSXMAG00000002540	-	100	94.470	Xiphophorus_maculatus