EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000042692 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: sfrs6|sfrs6b|wu:faa54g02|wu:fc17h09|zgc:103497
Full Name: serine/arginine-rich splicing factor 6
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 5544 bases
Position: chr22:7354355-7359898
Accession: 103037081
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000040373	RRM_1	PF00076.22	1.2e-29	1	2
ENSAMXP00000040373	RRM_1	PF00076.22	1.2e-29	2	2
ENSAMXP00000054860	RRM_1	PF00076.22	6.4e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000040957	-	1020	XM_007251384	ENSAMXP00000040373	339 (aa)	XP_007251446	-
ENSAMXT00000030389	-	423	-	ENSAMXP00000054860	140 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000042692's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000042692's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000042692	-	99	37.241	ENSAMXG00000032281	srsf9	74	38.144
ENSAMXG00000042692	-	95	65.414	ENSAMXG00000030476	srsf5a	66	62.842
ENSAMXG00000042692	-	96	66.912	ENSAMXG00000034811	srsf4	72	76.712
ENSAMXG00000042692	-	99	41.096	ENSAMXG00000035996	srsf1a	66	44.318
ENSAMXG00000042692	-	95	58.647	ENSAMXG00000011932	srsf5b	81	56.923
ENSAMXG00000042692	-	96	85.185	ENSAMXG00000003101	-	91	69.591

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000042692	-	96	78.519	ENSG00000124193	SRSF6	55	91.892	Homo_sapiens
ENSAMXG00000042692	-	97	85.294	ENSAPOG00000016635	-	83	86.029	Acanthochromis_polyacanthus
ENSAMXG00000042692	-	96	58.993	ENSAMEG00000003710	SRSF6	53	68.449	Ailuropoda_melanoleuca
ENSAMXG00000042692	-	94	81.061	ENSACIG00000023658	-	56	85.792	Amphilophus_citrinellus
ENSAMXG00000042692	-	96	82.222	ENSACIG00000020091	-	95	80.000	Amphilophus_citrinellus
ENSAMXG00000042692	-	96	82.222	ENSAOCG00000004309	-	57	80.645	Amphiprion_ocellaris
ENSAMXG00000042692	-	56	94.872	ENSAOCG00000019438	-	68	94.805	Amphiprion_ocellaris
ENSAMXG00000042692	-	96	81.481	ENSAPEG00000020746	-	65	81.720	Amphiprion_percula
ENSAMXG00000042692	-	96	88.889	ENSAPEG00000013086	-	91	55.605	Amphiprion_percula
ENSAMXG00000042692	-	96	82.222	ENSATEG00000007255	-	71	78.919	Anabas_testudineus
ENSAMXG00000042692	-	96	79.259	ENSACAG00000002061	SRSF6	52	82.796	Anolis_carolinensis
ENSAMXG00000042692	-	96	78.519	ENSANAG00000024080	SRSF6	55	91.892	Aotus_nancymaae
ENSAMXG00000042692	-	52	94.521	ENSACLG00000024373	-	77	94.521	Astatotilapia_calliptera
ENSAMXG00000042692	-	96	78.519	ENSBTAG00000008527	SRSF6	55	93.243	Bos_taurus
ENSAMXG00000042692	-	96	78.519	ENSCJAG00000048403	SRSF6	68	83.333	Callithrix_jacchus
ENSAMXG00000042692	-	96	78.519	ENSCAFG00000009289	SRSF6	55	93.243	Canis_familiaris
ENSAMXG00000042692	-	96	78.519	ENSCAFG00020013559	SRSF6	55	93.243	Canis_lupus_dingo
ENSAMXG00000042692	-	96	77.037	ENSCHIG00000009148	-	53	82.258	Capra_hircus
ENSAMXG00000042692	-	96	78.519	ENSCHIG00000015890	-	55	93.243	Capra_hircus
ENSAMXG00000042692	-	96	78.519	ENSCPOG00000011761	SRSF6	55	91.892	Cavia_porcellus
ENSAMXG00000042692	-	96	78.519	ENSCCAG00000026018	-	55	91.892	Cebus_capucinus
ENSAMXG00000042692	-	96	78.519	ENSCATG00000030794	SRSF6	55	91.892	Cercocebus_atys
ENSAMXG00000042692	-	96	78.519	ENSCLAG00000010247	SRSF6	55	91.892	Chinchilla_lanigera
ENSAMXG00000042692	-	96	78.519	ENSCSAG00000014022	SRSF6	53	83.333	Chlorocebus_sabaeus
ENSAMXG00000042692	-	96	82.963	ENSCPBG00000018200	SRSF6	93	68.902	Chrysemys_picta_bellii
ENSAMXG00000042692	-	96	77.778	ENSCANG00000037774	-	53	82.258	Colobus_angolensis_palliatus
ENSAMXG00000042692	-	96	78.519	ENSCGRG00001022339	Srsf6	55	91.892	Cricetulus_griseus_chok1gshd
ENSAMXG00000042692	-	98	77.372	ENSCSEG00000019778	SRSF6	92	77.372	Cynoglossus_semilaevis
ENSAMXG00000042692	-	97	81.618	ENSCVAG00000001863	SRSF6	95	83.846	Cyprinodon_variegatus
ENSAMXG00000042692	-	96	71.111	ENSDARG00000013729	srsf6a	59	81.250	Danio_rerio
ENSAMXG00000042692	-	96	87.407	ENSDARG00000016783	srsf6b	85	93.827	Danio_rerio
ENSAMXG00000042692	-	96	78.519	ENSDNOG00000008410	SRSF6	53	83.333	Dasypus_novemcinctus
ENSAMXG00000042692	-	96	78.519	ENSDORG00000028378	Srsf6	55	91.892	Dipodomys_ordii
ENSAMXG00000042692	-	96	78.358	ENSETEG00000006221	SRSF6	53	80.108	Echinops_telfairi
ENSAMXG00000042692	-	96	78.519	ENSEASG00005023429	SRSF6	53	83.333	Equus_asinus_asinus
ENSAMXG00000042692	-	96	78.519	ENSECAG00000023932	SRSF6	56	83.333	Equus_caballus
ENSAMXG00000042692	-	96	85.185	ENSELUG00000013506	SRSF6	69	93.506	Esox_lucius
ENSAMXG00000042692	-	98	83.212	ENSELUG00000024182	SRSF6	90	90.244	Esox_lucius
ENSAMXG00000042692	-	96	78.519	ENSFCAG00000032814	SRSF6	53	83.333	Felis_catus
ENSAMXG00000042692	-	96	85.926	ENSFHEG00000023065	srsf6a	54	86.022	Fundulus_heteroclitus
ENSAMXG00000042692	-	96	69.630	ENSGMOG00000006105	srsf6a	62	69.780	Gadus_morhua
ENSAMXG00000042692	-	96	82.222	ENSGMOG00000014458	srsf6a	51	82.105	Gadus_morhua
ENSAMXG00000042692	-	96	82.222	ENSGALG00000000990	SRSF6	55	91.892	Gallus_gallus
ENSAMXG00000042692	-	94	82.443	ENSGAFG00000019088	-	72	89.600	Gambusia_affinis
ENSAMXG00000042692	-	96	85.926	ENSGACG00000006084	srsf6a	53	85.484	Gasterosteus_aculeatus
ENSAMXG00000042692	-	96	82.963	ENSGAGG00000003238	SRSF6	93	68.902	Gopherus_agassizii
ENSAMXG00000042692	-	96	78.519	ENSGGOG00000009808	SRSF6	55	91.892	Gorilla_gorilla
ENSAMXG00000042692	-	96	80.000	ENSHBUG00000006386	-	57	81.720	Haplochromis_burtoni
ENSAMXG00000042692	-	96	62.222	ENSHGLG00000007701	-	57	66.667	Heterocephalus_glaber_female
ENSAMXG00000042692	-	96	78.519	ENSHGLG00000007348	SRSF6	55	91.892	Heterocephalus_glaber_female
ENSAMXG00000042692	-	96	79.259	ENSHCOG00000002740	srsf6a	57	81.183	Hippocampus_comes
ENSAMXG00000042692	-	96	82.353	ENSIPUG00000004776	-	92	67.925	Ictalurus_punctatus
ENSAMXG00000042692	-	96	78.519	ENSSTOG00000010866	SRSF6	55	91.892	Ictidomys_tridecemlineatus
ENSAMXG00000042692	-	96	76.296	ENSKMAG00000011934	srsf6a	59	80.645	Kryptolebias_marmoratus
ENSAMXG00000042692	-	96	85.926	ENSLBEG00000007356	srsf6a	51	84.865	Labrus_bergylta
ENSAMXG00000042692	-	96	85.185	ENSLACG00000005466	SRSF6	54	81.720	Latimeria_chalumnae
ENSAMXG00000042692	-	96	78.519	ENSMFAG00000036925	SRSF6	55	91.892	Macaca_fascicularis
ENSAMXG00000042692	-	96	78.519	ENSMMUG00000006742	SRSF6	55	91.892	Macaca_mulatta
ENSAMXG00000042692	-	96	78.519	ENSMNEG00000027392	-	55	91.892	Macaca_nemestrina
ENSAMXG00000042692	-	96	78.519	ENSMNEG00000038270	-	53	83.333	Macaca_nemestrina
ENSAMXG00000042692	-	96	88.889	ENSMAMG00000017161	srsf6a	53	86.022	Mastacembelus_armatus
ENSAMXG00000042692	-	59	92.683	ENSMAMG00000023477	-	78	94.521	Mastacembelus_armatus
ENSAMXG00000042692	-	96	80.000	ENSMZEG00005008032	-	57	81.720	Maylandia_zebra
ENSAMXG00000042692	-	96	76.296	ENSMZEG00005020658	-	60	78.804	Maylandia_zebra
ENSAMXG00000042692	-	74	75.000	ENSMAUG00000019086	-	55	91.892	Mesocricetus_auratus
ENSAMXG00000042692	-	96	78.519	ENSMICG00000008537	SRSF6	55	91.892	Microcebus_murinus
ENSAMXG00000042692	-	56	93.590	ENSMMOG00000015241	-	72	93.506	Mola_mola
ENSAMXG00000042692	-	96	77.778	ENSMODG00000003107	SRSF6	100	63.714	Monodelphis_domestica
ENSAMXG00000042692	-	96	78.519	MGP_CAROLIEiJ_G0024606	Srsf6	55	91.892	Mus_caroli
ENSAMXG00000042692	-	96	78.519	ENSMUSG00000016921	Srsf6	55	91.892	Mus_musculus
ENSAMXG00000042692	-	96	78.519	MGP_PahariEiJ_G0026050	Srsf6	55	91.892	Mus_pahari
ENSAMXG00000042692	-	96	78.519	MGP_SPRETEiJ_G0025528	Srsf6	55	91.892	Mus_spretus
ENSAMXG00000042692	-	96	78.519	ENSMPUG00000017692	SRSF6	64	83.333	Mustela_putorius_furo
ENSAMXG00000042692	-	96	53.333	ENSMLUG00000016618	SRSF6	53	56.604	Myotis_lucifugus
ENSAMXG00000042692	-	96	78.519	ENSNGAG00000017560	Srsf6	55	91.892	Nannospalax_galili
ENSAMXG00000042692	-	96	80.000	ENSNBRG00000014709	-	57	81.720	Neolamprologus_brichardi
ENSAMXG00000042692	-	96	88.148	ENSNBRG00000001846	-	91	71.779	Neolamprologus_brichardi
ENSAMXG00000042692	-	96	78.519	ENSNLEG00000006524	SRSF6	55	91.892	Nomascus_leucogenys
ENSAMXG00000042692	-	96	77.778	ENSMEUG00000014615	SRSF6	61	82.258	Notamacropus_eugenii
ENSAMXG00000042692	-	74	75.000	ENSODEG00000016510	-	55	91.892	Octodon_degus
ENSAMXG00000042692	-	96	81.481	ENSONIG00000001925	-	88	74.922	Oreochromis_niloticus
ENSAMXG00000042692	-	96	82.222	ENSONIG00000020247	-	53	83.333	Oreochromis_niloticus
ENSAMXG00000042692	-	96	61.268	ENSOCUG00000009785	-	63	68.912	Oryctolagus_cuniculus
ENSAMXG00000042692	-	94	46.212	ENSOCUG00000023999	-	70	47.541	Oryctolagus_cuniculus
ENSAMXG00000042692	-	94	79.545	ENSORLG00020017506	srsf6a	90	69.620	Oryzias_latipes_hni
ENSAMXG00000042692	-	96	78.519	ENSOGAG00000014468	SRSF6	53	82.796	Otolemur_garnettii
ENSAMXG00000042692	-	96	76.296	ENSOARG00000003117	SRSF6	53	80.645	Ovis_aries
ENSAMXG00000042692	-	96	77.778	ENSPPAG00000034327	-	53	83.784	Pan_paniscus
ENSAMXG00000042692	-	96	69.630	ENSPPAG00000043131	-	57	67.742	Pan_paniscus
ENSAMXG00000042692	-	96	78.519	ENSPPRG00000008917	SRSF6	53	83.333	Panthera_pardus
ENSAMXG00000042692	-	96	78.519	ENSPTRG00000044686	-	55	91.892	Pan_troglodytes
ENSAMXG00000042692	-	96	69.630	ENSPTRG00000046274	-	57	67.742	Pan_troglodytes
ENSAMXG00000042692	-	96	78.519	ENSPANG00000035224	SRSF6	55	91.892	Papio_anubis
ENSAMXG00000042692	-	98	85.401	ENSPKIG00000015603	-	88	88.462	Paramormyrops_kingsleyae
ENSAMXG00000042692	-	94	70.229	ENSPKIG00000015703	-	95	55.921	Paramormyrops_kingsleyae
ENSAMXG00000042692	-	96	87.407	ENSPKIG00000018463	-	76	94.805	Paramormyrops_kingsleyae
ENSAMXG00000042692	-	96	86.667	ENSPMGG00000014963	srsf6a	55	88.172	Periophthalmus_magnuspinnatus
ENSAMXG00000042692	-	96	77.778	ENSPCIG00000003820	SRSF6	100	63.714	Phascolarctos_cinereus
ENSAMXG00000042692	-	96	87.407	ENSPFOG00000006437	srsf6a	91	66.947	Poecilia_formosa
ENSAMXG00000042692	-	96	85.926	ENSPLAG00000009243	srsf6a	80	89.764	Poecilia_latipinna
ENSAMXG00000042692	-	96	86.667	ENSPMEG00000006042	SRSF6	94	74.769	Poecilia_mexicana
ENSAMXG00000042692	-	98	83.942	ENSPREG00000001040	srsf6a	87	90.769	Poecilia_reticulata
ENSAMXG00000042692	-	96	78.519	ENSPPYG00000011019	SRSF6	53	83.333	Pongo_abelii
ENSAMXG00000042692	-	96	77.037	ENSPCAG00000010954	SRSF6	55	82.258	Procavia_capensis
ENSAMXG00000042692	-	96	78.519	ENSPCOG00000026364	SRSF6	55	91.892	Propithecus_coquereli
ENSAMXG00000042692	-	96	78.519	ENSPVAG00000015232	SRSF6	53	83.243	Pteropus_vampyrus
ENSAMXG00000042692	-	96	88.148	ENSPNYG00000011272	-	85	52.055	Pundamilia_nyererei
ENSAMXG00000042692	-	96	80.000	ENSPNYG00000004944	-	57	81.720	Pundamilia_nyererei
ENSAMXG00000042692	-	98	83.942	ENSPNAG00000023179	-	94	84.615	Pygocentrus_nattereri
ENSAMXG00000042692	-	96	78.519	ENSRNOG00000006380	Srsf6	54	83.333	Rattus_norvegicus
ENSAMXG00000042692	-	96	78.519	ENSRBIG00000041414	SRSF6	57	91.892	Rhinopithecus_bieti
ENSAMXG00000042692	-	96	78.519	ENSRROG00000029989	SRSF6	55	91.892	Rhinopithecus_roxellana
ENSAMXG00000042692	-	96	65.185	ENSSBOG00000034078	-	54	70.109	Saimiri_boliviensis_boliviensis
ENSAMXG00000042692	-	96	78.519	ENSSBOG00000033708	-	55	91.892	Saimiri_boliviensis_boliviensis
ENSAMXG00000042692	-	96	77.778	ENSSHAG00000012805	SRSF6	100	63.714	Sarcophilus_harrisii
ENSAMXG00000042692	-	96	85.000	ENSSFOG00015019681	-	53	87.565	Scleropages_formosus
ENSAMXG00000042692	-	96	83.704	ENSSFOG00015015169	SRSF6	59	88.172	Scleropages_formosus
ENSAMXG00000042692	-	57	91.250	ENSSMAG00000014861	-	54	93.151	Scophthalmus_maximus
ENSAMXG00000042692	-	96	77.778	ENSSMAG00000017447	-	55	79.459	Scophthalmus_maximus
ENSAMXG00000042692	-	96	88.889	ENSSDUG00000016097	srsf6a	53	86.022	Seriola_dumerili
ENSAMXG00000042692	-	59	92.683	ENSSDUG00000011036	-	79	94.521	Seriola_dumerili
ENSAMXG00000042692	-	59	92.683	ENSSLDG00000014858	-	79	94.521	Seriola_lalandi_dorsalis
ENSAMXG00000042692	-	96	88.889	ENSSLDG00000022841	srsf6a	53	86.022	Seriola_lalandi_dorsalis
ENSAMXG00000042692	-	96	80.741	ENSSPUG00000004967	SRSF6	55	91.892	Sphenodon_punctatus
ENSAMXG00000042692	-	59	91.463	ENSSPAG00000021913	-	76	94.521	Stegastes_partitus
ENSAMXG00000042692	-	96	88.889	ENSSPAG00000002362	srsf6a	92	67.913	Stegastes_partitus
ENSAMXG00000042692	-	96	81.481	ENSSSCG00000007362	SRSF6	61	83.333	Sus_scrofa
ENSAMXG00000042692	-	96	82.222	ENSTGUG00000003455	SRSF6	93	62.883	Taeniopygia_guttata
ENSAMXG00000042692	-	57	93.750	ENSTRUG00000021397	-	79	94.521	Takifugu_rubripes
ENSAMXG00000042692	-	96	84.444	ENSTNIG00000001692	srsf6a	56	87.097	Tetraodon_nigroviridis
ENSAMXG00000042692	-	96	78.519	ENSUAMG00000003559	SRSF6	55	93.243	Ursus_americanus
ENSAMXG00000042692	-	96	82.963	ENSXMAG00000021849	srsf6a	93	70.769	Xiphophorus_maculatus