EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000042699 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 3297 bases
Position: chr18:3382068-3385364
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000047056	RVT_1	PF00078.27	2.5e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000051970	-	3297	-	ENSAMXP00000047056	1098 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000042699's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000042699's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000042699	-	88	52.556	ENSAMXG00000041694	-	97	52.563
ENSAMXG00000042699	-	56	67.619	ENSAMXG00000043875	-	90	69.055
ENSAMXG00000042699	-	64	68.175	ENSAMXG00000031305	-	68	68.175
ENSAMXG00000042699	-	54	60.204	ENSAMXG00000037157	-	67	60.204
ENSAMXG00000042699	-	87	52.560	ENSAMXG00000040695	-	61	54.264
ENSAMXG00000042699	-	78	55.006	ENSAMXG00000040915	-	83	51.012
ENSAMXG00000042699	-	90	73.360	ENSAMXG00000040149	-	64	73.360
ENSAMXG00000042699	-	55	46.262	ENSAMXG00000038544	-	94	46.322
ENSAMXG00000042699	-	86	51.509	ENSAMXG00000033138	-	64	52.637
ENSAMXG00000042699	-	98	70.718	ENSAMXG00000036523	-	65	70.718
ENSAMXG00000042699	-	96	71.148	ENSAMXG00000040104	-	64	71.295
ENSAMXG00000042699	-	64	75.424	ENSAMXG00000042521	-	56	75.424
ENSAMXG00000042699	-	62	68.279	ENSAMXG00000033831	-	94	67.121
ENSAMXG00000042699	-	65	67.445	ENSAMXG00000036897	-	99	67.445
ENSAMXG00000042699	-	56	69.502	ENSAMXG00000029689	-	81	70.432
ENSAMXG00000042699	-	56	46.615	ENSAMXG00000030934	-	97	46.677

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000042699	-	88	50.459	ENSDARG00000111789	BX571665.1	64	50.205	Danio_rerio
ENSAMXG00000042699	-	88	50.968	ENSDARG00000114395	CU929458.1	64	50.717	Danio_rerio
ENSAMXG00000042699	-	88	51.070	ENSDARG00000115891	CR533578.1	64	50.820	Danio_rerio
ENSAMXG00000042699	-	50	30.893	ENSHCOG00000019997	-	92	30.674	Hippocampus_comes
ENSAMXG00000042699	-	82	43.660	ENSKMAG00000007139	-	68	43.889	Kryptolebias_marmoratus
ENSAMXG00000042699	-	88	44.184	ENSORLG00000027396	-	62	46.257	Oryzias_latipes
ENSAMXG00000042699	-	83	45.631	ENSORLG00020019993	-	89	45.993	Oryzias_latipes_hni
ENSAMXG00000042699	-	54	33.025	ENSORLG00015000130	-	56	33.025	Oryzias_latipes_hsok
ENSAMXG00000042699	-	87	44.831	ENSORLG00015020336	-	89	46.740	Oryzias_latipes_hsok
ENSAMXG00000042699	-	88	44.422	ENSORLG00015015202	-	83	43.980	Oryzias_latipes_hsok