EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000042724 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 7568 bases
Position: chrAPWO02001263.1:253575-261142
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000046486	MMR_HSR1	PF01926.23	9.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000030433	-	1188	-	ENSAMXP00000046486	395 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000042724's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000042724's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000042724	-	62	39.695	ENSAMXG00000007079	-	95	39.695
ENSAMXG00000042724	-	51	49.231	ENSAMXG00000002562	-	88	56.923
ENSAMXG00000042724	-	54	41.784	ENSAMXG00000043046	-	82	43.192
ENSAMXG00000042724	-	59	36.975	ENSAMXG00000039246	-	82	36.975
ENSAMXG00000042724	-	54	41.202	ENSAMXG00000012113	-	76	41.202
ENSAMXG00000042724	-	53	35.000	ENSAMXG00000030744	-	74	35.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000042724	-	53	40.435	ENSACIG00000007466	-	67	40.435	Amphilophus_citrinellus
ENSAMXG00000042724	-	52	40.278	ENSACIG00000019524	-	88	40.278	Amphilophus_citrinellus
ENSAMXG00000042724	-	56	38.211	ENSAOCG00000023240	-	80	38.211	Amphiprion_ocellaris
ENSAMXG00000042724	-	57	36.981	ENSAOCG00000023255	-	93	36.981	Amphiprion_ocellaris
ENSAMXG00000042724	-	54	32.773	ENSACLG00000011913	-	70	32.773	Astatotilapia_calliptera
ENSAMXG00000042724	-	53	42.424	ENSACLG00000010048	-	78	42.424	Astatotilapia_calliptera
ENSAMXG00000042724	-	54	32.773	ENSACLG00000011921	-	80	32.773	Astatotilapia_calliptera
ENSAMXG00000042724	-	51	34.934	ENSCSEG00000002150	zgc:113625	71	34.934	Cynoglossus_semilaevis
ENSAMXG00000042724	-	51	42.857	ENSCVAG00000004346	-	91	42.857	Cyprinodon_variegatus
ENSAMXG00000042724	-	55	44.304	ENSDARG00000095076	si:dkey-73p2.3	88	44.304	Danio_rerio
ENSAMXG00000042724	-	50	42.424	ENSDARG00000116928	CABZ01059408.1	94	42.424	Danio_rerio
ENSAMXG00000042724	-	50	38.362	ENSDARG00000054160	zgc:113625	64	44.944	Danio_rerio
ENSAMXG00000042724	-	52	57.554	ENSELUG00000015115	-	75	57.554	Esox_lucius
ENSAMXG00000042724	-	51	42.661	ENSELUG00000015171	-	73	42.661	Esox_lucius
ENSAMXG00000042724	-	59	37.109	ENSHBUG00000007729	-	75	37.109	Haplochromis_burtoni
ENSAMXG00000042724	-	67	34.564	ENSKMAG00000002395	-	51	34.564	Kryptolebias_marmoratus
ENSAMXG00000042724	-	50	37.850	ENSKMAG00000001775	-	87	54.701	Kryptolebias_marmoratus
ENSAMXG00000042724	-	55	31.727	ENSLBEG00000025797	-	80	31.727	Labrus_bergylta
ENSAMXG00000042724	-	54	33.193	ENSMZEG00005006351	-	79	33.193	Maylandia_zebra
ENSAMXG00000042724	-	60	32.443	ENSMZEG00005006362	-	78	32.443	Maylandia_zebra
ENSAMXG00000042724	-	53	41.414	ENSMZEG00005022792	-	78	41.414	Maylandia_zebra
ENSAMXG00000042724	-	51	45.312	ENSNBRG00000020282	-	79	45.312	Neolamprologus_brichardi
ENSAMXG00000042724	-	52	40.708	ENSNBRG00000024169	-	76	40.708	Neolamprologus_brichardi
ENSAMXG00000042724	-	53	48.558	ENSONIG00000011631	-	61	48.558	Oreochromis_niloticus
ENSAMXG00000042724	-	51	36.792	ENSONIG00000007439	-	86	36.792	Oreochromis_niloticus
ENSAMXG00000042724	-	54	46.739	ENSONIG00000013606	-	86	46.739	Oreochromis_niloticus
ENSAMXG00000042724	-	52	40.265	ENSONIG00000016463	-	76	40.265	Oreochromis_niloticus
ENSAMXG00000042724	-	50	42.922	ENSPKIG00000012111	zgc:171452	57	42.922	Paramormyrops_kingsleyae
ENSAMXG00000042724	-	51	40.086	ENSPMGG00000013352	-	82	43.541	Periophthalmus_magnuspinnatus
ENSAMXG00000042724	-	52	35.622	ENSPFOG00000022860	-	82	36.481	Poecilia_formosa
ENSAMXG00000042724	-	56	38.174	ENSPFOG00000001239	-	98	38.174	Poecilia_formosa
ENSAMXG00000042724	-	56	32.922	ENSPMEG00000019934	-	74	32.922	Poecilia_mexicana
ENSAMXG00000042724	-	53	46.330	ENSPMEG00000007417	-	91	46.330	Poecilia_mexicana
ENSAMXG00000042724	-	56	47.826	ENSPMEG00000011042	-	73	47.826	Poecilia_mexicana
ENSAMXG00000042724	-	56	36.471	ENSPMEG00000002161	-	87	36.471	Poecilia_mexicana
ENSAMXG00000042724	-	62	36.327	ENSPREG00000006805	-	100	36.327	Poecilia_reticulata
ENSAMXG00000042724	-	60	34.874	ENSPREG00000006751	-	97	34.874	Poecilia_reticulata
ENSAMXG00000042724	-	64	32.270	ENSPREG00000000353	-	91	32.270	Poecilia_reticulata
ENSAMXG00000042724	-	57	39.271	ENSPNYG00000022032	-	83	39.271	Pundamilia_nyererei
ENSAMXG00000042724	-	50	42.130	ENSPNYG00000023964	-	80	42.130	Pundamilia_nyererei
ENSAMXG00000042724	-	51	39.111	ENSSDUG00000003711	-	77	39.111	Seriola_dumerili
ENSAMXG00000042724	-	54	39.916	ENSSLDG00000011176	-	68	46.703	Seriola_lalandi_dorsalis
ENSAMXG00000042724	-	57	37.445	ENSXCOG00000014966	zgc:113625	88	37.445	Xiphophorus_couchianus
ENSAMXG00000042724	-	57	39.506	ENSXCOG00000009883	-	78	39.506	Xiphophorus_couchianus
ENSAMXG00000042724	-	67	34.091	ENSXMAG00000012592	-	93	34.091	Xiphophorus_maculatus
ENSAMXG00000042724	-	50	41.589	ENSXMAG00000028555	-	75	41.589	Xiphophorus_maculatus