EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000042824 (Gene tree)
Gene ID: 103021392
Gene Symbol: arl13b
Alias: arl2l1|chunp6872|dkfzp761h079|fc23g07|scorpion|un-named hi459|unm hi459|wu:fc23g07|zgc:123149
Full Name: ADP ribosylation factor like GTPase 13B
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 13247 bases
Position: chr12:8499090-8512336
Accession: 103021392
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000039135	MMR_HSR1	PF01926.23	9.2e-05	1	1
ENSAMXP00000038687	MMR_HSR1	PF01926.23	9.4e-05	1	1
ENSAMXP00000051557	MMR_HSR1	PF01926.23	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000052976	-	2000	-	ENSAMXP00000038687	392 (aa)	-	-
ENSAMXT00000045943	-	1170	XM_007246691	ENSAMXP00000039135	389 (aa)	XP_007246753	-
ENSAMXT00000057975	-	1233	XM_007246689	ENSAMXP00000051557	410 (aa)	XP_007246751	UPI000BBDF151

Gene Model

Click here to download ENSAMXG00000042824's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000042824's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000042824	arl13b	88	38.000	ENSAMXG00000021495	arl13a	94	34.865

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000042824	arl13b	99	77.062	ENSAPOG00000013256	arl13b	99	76.755	Acanthochromis_polyacanthus
ENSAMXG00000042824	arl13b	100	75.366	ENSACIG00000017582	arl13b	93	91.593	Amphilophus_citrinellus
ENSAMXG00000042824	arl13b	99	76.804	ENSAOCG00000002828	arl13b	99	76.513	Amphiprion_ocellaris
ENSAMXG00000042824	arl13b	100	75.765	ENSAPEG00000014654	arl13b	100	75.765	Amphiprion_percula
ENSAMXG00000042824	arl13b	100	73.333	ENSATEG00000017586	arl13b	99	74.940	Anabas_testudineus
ENSAMXG00000042824	arl13b	99	60.096	ENSACAG00000000523	ARL13B	99	60.817	Anolis_carolinensis
ENSAMXG00000042824	arl13b	100	73.171	ENSACLG00000024227	arl13b	90	90.995	Astatotilapia_calliptera
ENSAMXG00000042824	arl13b	95	56.997	ENSCAPG00000006764	ARL13B	77	79.612	Cavia_aperea
ENSAMXG00000042824	arl13b	99	58.596	ENSCPOG00000002558	ARL13B	99	57.946	Cavia_porcellus
ENSAMXG00000042824	arl13b	95	58.118	ENSCLAG00000006379	ARL13B	100	57.773	Chinchilla_lanigera
ENSAMXG00000042824	arl13b	100	62.187	ENSCPBG00000005599	ARL13B	100	62.759	Chrysemys_picta_bellii
ENSAMXG00000042824	arl13b	100	71.899	ENSCSEG00000005258	arl13b	99	72.837	Cynoglossus_semilaevis
ENSAMXG00000042824	arl13b	100	71.913	ENSCVAG00000001545	arl13b	89	89.381	Cyprinodon_variegatus
ENSAMXG00000042824	arl13b	100	83.415	ENSDARG00000012763	arl13b	100	84.428	Danio_rerio
ENSAMXG00000042824	arl13b	69	51.866	ENSEBUG00000006528	arl13b	90	50.746	Eptatretus_burgeri
ENSAMXG00000042824	arl13b	100	57.437	ENSEEUG00000010823	ARL13B	74	73.978	Erinaceus_europaeus
ENSAMXG00000042824	arl13b	99	59.611	ENSFALG00000001654	ARL13B	100	59.606	Ficedula_albicollis
ENSAMXG00000042824	arl13b	100	62.385	ENSFDAG00000006556	ARL13B	100	63.134	Fukomys_damarensis
ENSAMXG00000042824	arl13b	100	72.774	ENSFHEG00000016049	arl13b	100	73.791	Fundulus_heteroclitus
ENSAMXG00000042824	arl13b	95	65.985	ENSGMOG00000018628	arl13b	100	83.534	Gadus_morhua
ENSAMXG00000042824	arl13b	99	71.282	ENSGAFG00000000025	arl13b	84	88.938	Gambusia_affinis
ENSAMXG00000042824	arl13b	99	74.352	ENSGACG00000014228	arl13b	99	73.206	Gasterosteus_aculeatus
ENSAMXG00000042824	arl13b	100	62.415	ENSGAGG00000019336	ARL13B	100	62.385	Gopherus_agassizii
ENSAMXG00000042824	arl13b	100	76.642	ENSHBUG00000020619	arl13b	100	74.820	Haplochromis_burtoni
ENSAMXG00000042824	arl13b	100	76.154	ENSHCOG00000006106	arl13b	100	74.619	Hippocampus_comes
ENSAMXG00000042824	arl13b	99	78.182	ENSKMAG00000001122	arl13b	99	75.610	Kryptolebias_marmoratus
ENSAMXG00000042824	arl13b	99	73.634	ENSLBEG00000014612	arl13b	99	75.121	Labrus_bergylta
ENSAMXG00000042824	arl13b	100	70.776	ENSLOCG00000010465	arl13b	100	70.091	Lepisosteus_oculatus
ENSAMXG00000042824	arl13b	99	76.289	ENSMAMG00000021452	arl13b	99	75.610	Mastacembelus_armatus
ENSAMXG00000042824	arl13b	100	75.061	ENSMZEG00005017827	arl13b	100	74.580	Maylandia_zebra
ENSAMXG00000042824	arl13b	99	73.127	ENSMMOG00000010253	arl13b	99	73.723	Mola_mola
ENSAMXG00000042824	arl13b	99	68.052	ENSMALG00000014655	arl13b	99	66.993	Monopterus_albus
ENSAMXG00000042824	arl13b	100	60.599	MGP_CAROLIEiJ_G0020856	Arl13b	100	61.060	Mus_caroli
ENSAMXG00000042824	arl13b	100	59.954	ENSMUSG00000022911	Arl13b	100	62.093	Mus_musculus
ENSAMXG00000042824	arl13b	100	61.806	MGP_PahariEiJ_G0016561	Arl13b	100	61.751	Mus_pahari
ENSAMXG00000042824	arl13b	100	58.824	MGP_SPRETEiJ_G0021763	Arl13b	100	61.521	Mus_spretus
ENSAMXG00000042824	arl13b	95	60.911	ENSMLUG00000017473	ARL13B	96	61.151	Myotis_lucifugus
ENSAMXG00000042824	arl13b	100	71.951	ENSNBRG00000004078	arl13b	91	92.035	Neolamprologus_brichardi
ENSAMXG00000042824	arl13b	100	61.136	ENSNLEG00000001772	ARL13B	100	60.412	Nomascus_leucogenys
ENSAMXG00000042824	arl13b	80	64.516	ENSMEUG00000008036	-	61	64.516	Notamacropus_eugenii
ENSAMXG00000042824	arl13b	100	60.000	ENSODEG00000011381	ARL13B	100	62.212	Octodon_degus
ENSAMXG00000042824	arl13b	100	72.603	ENSONIG00000001864	arl13b	100	71.005	Oreochromis_niloticus
ENSAMXG00000042824	arl13b	99	74.083	ENSORLG00000006350	arl13b	89	91.150	Oryzias_latipes
ENSAMXG00000042824	arl13b	99	74.572	ENSORLG00020013754	arl13b	99	75.610	Oryzias_latipes_hni
ENSAMXG00000042824	arl13b	99	74.083	ENSORLG00015012586	arl13b	99	74.390	Oryzias_latipes_hsok
ENSAMXG00000042824	arl13b	56	87.558	ENSOMEG00000010187	arl13b	88	86.726	Oryzias_melastigma
ENSAMXG00000042824	arl13b	99	62.169	ENSPSIG00000018115	ARL13B	99	62.319	Pelodiscus_sinensis
ENSAMXG00000042824	arl13b	99	74.485	ENSPMGG00000004584	arl13b	99	74.217	Periophthalmus_magnuspinnatus
ENSAMXG00000042824	arl13b	100	48.064	ENSPCIG00000026984	ARL13B	62	59.191	Phascolarctos_cinereus
ENSAMXG00000042824	arl13b	99	72.727	ENSPFOG00000005379	arl13b	100	72.993	Poecilia_formosa
ENSAMXG00000042824	arl13b	100	71.465	ENSPLAG00000008699	arl13b	100	73.077	Poecilia_latipinna
ENSAMXG00000042824	arl13b	97	69.949	ENSPMEG00000015387	arl13b	99	72.081	Poecilia_mexicana
ENSAMXG00000042824	arl13b	100	73.077	ENSPREG00000006291	arl13b	100	72.993	Poecilia_reticulata
ENSAMXG00000042824	arl13b	95	72.379	ENSPNYG00000022879	arl13b	98	71.355	Pundamilia_nyererei
ENSAMXG00000042824	arl13b	100	90.732	ENSPNAG00000003803	arl13b	100	91.463	Pygocentrus_nattereri
ENSAMXG00000042824	arl13b	58	84.444	ENSSFOG00015005491	arl13b	88	84.444	Scleropages_formosus
ENSAMXG00000042824	arl13b	55	74.074	ENSSFOG00015023057	arl13b	85	74.074	Scleropages_formosus
ENSAMXG00000042824	arl13b	99	71.059	ENSSMAG00000015450	arl13b	99	70.560	Scophthalmus_maximus
ENSAMXG00000042824	arl13b	100	77.179	ENSSDUG00000005560	arl13b	99	77.387	Seriola_dumerili
ENSAMXG00000042824	arl13b	100	77.436	ENSSLDG00000013361	arl13b	100	78.517	Seriola_lalandi_dorsalis
ENSAMXG00000042824	arl13b	99	60.698	ENSSARG00000003872	ARL13B	62	73.783	Sorex_araneus
ENSAMXG00000042824	arl13b	59	82.174	ENSSPUG00000006649	ARL13B	92	81.858	Sphenodon_punctatus
ENSAMXG00000042824	arl13b	100	76.923	ENSSPAG00000016442	arl13b	91	76.131	Stegastes_partitus
ENSAMXG00000042824	arl13b	100	61.201	ENSTGUG00000013493	ARL13B	100	60.465	Taeniopygia_guttata
ENSAMXG00000042824	arl13b	54	71.292	ENSTRUG00000003641	arl13b	78	70.732	Takifugu_rubripes
ENSAMXG00000042824	arl13b	100	53.201	ENSTRUG00000013035	-	88	71.239	Takifugu_rubripes
ENSAMXG00000042824	arl13b	100	57.763	ENSVVUG00000021511	ARL13B	100	58.661	Vulpes_vulpes
ENSAMXG00000042824	arl13b	70	34.545	ENSXETG00000026166	arl13a	50	40.284	Xenopus_tropicalis
ENSAMXG00000042824	arl13b	100	61.556	ENSXETG00000032383	ARL13B	97	77.491	Xenopus_tropicalis
ENSAMXG00000042824	arl13b	100	69.512	ENSXCOG00000016955	arl13b	100	70.073	Xiphophorus_couchianus
ENSAMXG00000042824	arl13b	100	73.008	ENSXMAG00000002089	arl13b	100	73.333	Xiphophorus_maculatus