EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000042902 (Gene tree)
Gene ID: 103037511
Gene Symbol: lsm8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 5128 bases
Position: chr7:38893569-38898696
Accession: 103037511
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000054062	LSM	PF01423.22	7.9e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000053827	-	913	XM_007252362	ENSAMXP00000054062	96 (aa)	XP_007252424	W5KQQ2

Gene Model

Click here to download ENSAMXG00000042902's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03018	RNA degradation	KEGG
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000042902's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000042902	lsm8	76	33.333	ENSAMXG00000005441	lsm1	56	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000042902	lsm8	100	94.792	ENSG00000128534	LSM8	100	98.667	Homo_sapiens
ENSAMXG00000042902	lsm8	100	97.917	ENSAPOG00000008649	lsm8	100	97.917	Acanthochromis_polyacanthus
ENSAMXG00000042902	lsm8	100	94.792	ENSAMEG00000001162	LSM8	100	94.792	Ailuropoda_melanoleuca
ENSAMXG00000042902	lsm8	78	98.667	ENSACIG00000014694	lsm8	100	98.667	Amphilophus_citrinellus
ENSAMXG00000042902	lsm8	100	97.917	ENSAOCG00000013926	lsm8	100	97.917	Amphiprion_ocellaris
ENSAMXG00000042902	lsm8	100	97.917	ENSAPEG00000023502	lsm8	100	97.917	Amphiprion_percula
ENSAMXG00000042902	lsm8	78	98.667	ENSATEG00000023432	lsm8	100	98.667	Anabas_testudineus
ENSAMXG00000042902	lsm8	95	91.489	ENSAPLG00000005115	LSM8	95	91.489	Anas_platyrhynchos
ENSAMXG00000042902	lsm8	100	94.792	ENSANAG00000027771	LSM8	100	95.946	Aotus_nancymaae
ENSAMXG00000042902	lsm8	100	97.917	ENSACLG00000011253	lsm8	100	97.917	Astatotilapia_calliptera
ENSAMXG00000042902	lsm8	100	94.792	ENSBTAG00000012649	LSM8	100	94.792	Bos_taurus
ENSAMXG00000042902	lsm8	98	55.319	WBGene00003082	lsm-8	96	55.319	Caenorhabditis_elegans
ENSAMXG00000042902	lsm8	100	94.792	ENSCJAG00000046406	LSM8	100	95.946	Callithrix_jacchus
ENSAMXG00000042902	lsm8	98	95.745	ENSCAFG00000016459	LSM8	95	95.745	Canis_familiaris
ENSAMXG00000042902	lsm8	89	94.118	ENSCAFG00020012800	-	66	94.118	Canis_lupus_dingo
ENSAMXG00000042902	lsm8	100	94.792	ENSCAFG00020007643	-	100	94.792	Canis_lupus_dingo
ENSAMXG00000042902	lsm8	89	97.647	ENSCHIG00000014201	LSM8	90	97.647	Capra_hircus
ENSAMXG00000042902	lsm8	100	94.792	ENSTSYG00000032434	LSM8	100	94.792	Carlito_syrichta
ENSAMXG00000042902	lsm8	77	97.297	ENSCAPG00000008253	LSM8	100	97.297	Cavia_aperea
ENSAMXG00000042902	lsm8	100	94.792	ENSCPOG00000035673	LSM8	100	94.792	Cavia_porcellus
ENSAMXG00000042902	lsm8	100	94.792	ENSCCAG00000021329	LSM8	100	95.946	Cebus_capucinus
ENSAMXG00000042902	lsm8	100	94.792	ENSCATG00000045302	LSM8	100	95.946	Cercocebus_atys
ENSAMXG00000042902	lsm8	100	94.792	ENSCLAG00000003726	LSM8	100	94.792	Chinchilla_lanigera
ENSAMXG00000042902	lsm8	100	94.792	ENSCSAG00000010802	-	100	94.792	Chlorocebus_sabaeus
ENSAMXG00000042902	lsm8	100	90.625	ENSCSAG00000019007	-	100	90.625	Chlorocebus_sabaeus
ENSAMXG00000042902	lsm8	89	97.647	ENSCPBG00000008154	LSM8	87	97.647	Chrysemys_picta_bellii
ENSAMXG00000042902	lsm8	100	75.000	ENSCING00000024877	-	100	75.000	Ciona_intestinalis
ENSAMXG00000042902	lsm8	100	94.792	ENSCANG00000040728	LSM8	100	95.946	Colobus_angolensis_palliatus
ENSAMXG00000042902	lsm8	100	94.792	ENSCGRG00001000450	Lsm8	100	94.792	Cricetulus_griseus_chok1gshd
ENSAMXG00000042902	lsm8	89	97.647	ENSCGRG00000005587	Lsm8	100	97.647	Cricetulus_griseus_crigri
ENSAMXG00000042902	lsm8	100	85.417	ENSCSEG00000004164	lsm8	100	85.417	Cynoglossus_semilaevis
ENSAMXG00000042902	lsm8	100	96.875	ENSCVAG00000020547	lsm8	100	96.875	Cyprinodon_variegatus
ENSAMXG00000042902	lsm8	100	96.875	ENSDARG00000091656	lsm8	100	96.875	Danio_rerio
ENSAMXG00000042902	lsm8	100	94.792	ENSDNOG00000034613	LSM8	100	94.792	Dasypus_novemcinctus
ENSAMXG00000042902	lsm8	100	94.792	ENSDORG00000027868	Lsm8	100	94.792	Dipodomys_ordii
ENSAMXG00000042902	lsm8	98	71.277	FBgn0035271	CG2021	99	71.277	Drosophila_melanogaster
ENSAMXG00000042902	lsm8	100	95.833	ENSETEG00000011594	LSM8	100	95.833	Echinops_telfairi
ENSAMXG00000042902	lsm8	77	93.243	ENSEBUG00000012017	lsm8	100	93.243	Eptatretus_burgeri
ENSAMXG00000042902	lsm8	100	94.792	ENSEASG00005008932	LSM8	62	94.792	Equus_asinus_asinus
ENSAMXG00000042902	lsm8	89	97.647	ENSECAG00000024025	LSM8	77	97.647	Equus_caballus
ENSAMXG00000042902	lsm8	100	94.792	ENSELUG00000010138	lsm8	100	94.792	Esox_lucius
ENSAMXG00000042902	lsm8	85	74.390	ENSFCAG00000044794	-	83	74.390	Felis_catus
ENSAMXG00000042902	lsm8	100	94.792	ENSFCAG00000036620	-	100	94.792	Felis_catus
ENSAMXG00000042902	lsm8	100	95.833	ENSFALG00000010023	LSM8	100	95.833	Ficedula_albicollis
ENSAMXG00000042902	lsm8	100	94.792	ENSFDAG00000019530	LSM8	100	94.792	Fukomys_damarensis
ENSAMXG00000042902	lsm8	100	97.917	ENSFHEG00000013729	lsm8	100	97.917	Fundulus_heteroclitus
ENSAMXG00000042902	lsm8	100	95.833	ENSGALG00000009110	LSM8	100	95.833	Gallus_gallus
ENSAMXG00000042902	lsm8	100	96.875	ENSGAFG00000001135	lsm8	100	96.875	Gambusia_affinis
ENSAMXG00000042902	lsm8	100	94.792	ENSGAGG00000017366	LSM8	100	94.792	Gopherus_agassizii
ENSAMXG00000042902	lsm8	100	94.792	ENSGGOG00000041883	LSM8	100	94.792	Gorilla_gorilla
ENSAMXG00000042902	lsm8	100	97.917	ENSHBUG00000003646	lsm8	100	97.917	Haplochromis_burtoni
ENSAMXG00000042902	lsm8	71	94.118	ENSHGLG00000001988	-	99	94.118	Heterocephalus_glaber_female
ENSAMXG00000042902	lsm8	100	88.542	ENSHGLG00000019782	-	100	88.542	Heterocephalus_glaber_female
ENSAMXG00000042902	lsm8	100	90.625	ENSHGLG00100012166	-	100	90.625	Heterocephalus_glaber_male
ENSAMXG00000042902	lsm8	98	93.617	ENSHGLG00100003934	-	94	93.617	Heterocephalus_glaber_male
ENSAMXG00000042902	lsm8	100	96.875	ENSHCOG00000005037	lsm8	100	96.875	Hippocampus_comes
ENSAMXG00000042902	lsm8	100	100.000	ENSIPUG00000019811	NAA38	100	100.000	Ictalurus_punctatus
ENSAMXG00000042902	lsm8	100	94.792	ENSSTOG00000009039	LSM8	100	94.792	Ictidomys_tridecemlineatus
ENSAMXG00000042902	lsm8	92	85.227	ENSSTOG00000034801	-	81	85.227	Ictidomys_tridecemlineatus
ENSAMXG00000042902	lsm8	100	94.792	ENSJJAG00000009031	Lsm8	99	94.792	Jaculus_jaculus
ENSAMXG00000042902	lsm8	100	97.917	ENSKMAG00000018983	lsm8	100	97.917	Kryptolebias_marmoratus
ENSAMXG00000042902	lsm8	100	93.750	ENSLACG00000010231	LSM8	100	93.750	Latimeria_chalumnae
ENSAMXG00000042902	lsm8	100	98.958	ENSLOCG00000015580	lsm8	100	98.958	Lepisosteus_oculatus
ENSAMXG00000042902	lsm8	100	93.814	ENSLAFG00000011242	LSM8	100	93.814	Loxodonta_africana
ENSAMXG00000042902	lsm8	100	94.792	ENSMFAG00000035798	LSM8	100	95.946	Macaca_fascicularis
ENSAMXG00000042902	lsm8	100	90.625	ENSMFAG00000013044	-	100	90.625	Macaca_fascicularis
ENSAMXG00000042902	lsm8	100	94.792	ENSMMUG00000046401	LSM8	100	95.946	Macaca_mulatta
ENSAMXG00000042902	lsm8	78	94.667	ENSMNEG00000011141	-	100	94.667	Macaca_nemestrina
ENSAMXG00000042902	lsm8	100	94.792	ENSMNEG00000036764	-	100	95.946	Macaca_nemestrina
ENSAMXG00000042902	lsm8	100	94.792	ENSMLEG00000035828	-	100	95.946	Mandrillus_leucophaeus
ENSAMXG00000042902	lsm8	100	79.167	ENSMLEG00000039324	-	100	79.167	Mandrillus_leucophaeus
ENSAMXG00000042902	lsm8	78	98.667	ENSMAMG00000018839	lsm8	100	98.667	Mastacembelus_armatus
ENSAMXG00000042902	lsm8	100	97.917	ENSMZEG00005019138	lsm8	100	97.917	Maylandia_zebra
ENSAMXG00000042902	lsm8	100	95.833	ENSMGAG00000008808	LSM8	100	95.833	Meleagris_gallopavo
ENSAMXG00000042902	lsm8	100	88.542	ENSMAUG00000015721	-	100	88.542	Mesocricetus_auratus
ENSAMXG00000042902	lsm8	75	91.667	ENSMAUG00000020287	-	100	89.189	Mesocricetus_auratus
ENSAMXG00000042902	lsm8	100	76.042	ENSMAUG00000015356	-	100	76.042	Mesocricetus_auratus
ENSAMXG00000042902	lsm8	100	94.792	ENSMICG00000042730	LSM8	100	94.792	Microcebus_murinus
ENSAMXG00000042902	lsm8	100	94.792	ENSMOCG00000001688	Lsm8	100	94.792	Microtus_ochrogaster
ENSAMXG00000042902	lsm8	78	98.667	ENSMMOG00000006046	lsm8	100	98.667	Mola_mola
ENSAMXG00000042902	lsm8	76	86.667	ENSMODG00000015729	LSM8	96	86.667	Monodelphis_domestica
ENSAMXG00000042902	lsm8	100	98.958	ENSMALG00000000405	lsm8	100	98.958	Monopterus_albus
ENSAMXG00000042902	lsm8	100	94.792	MGP_CAROLIEiJ_G0028125	-	100	94.792	Mus_caroli
ENSAMXG00000042902	lsm8	100	94.792	ENSMUSG00000044155	Lsm8	100	94.792	Mus_musculus
ENSAMXG00000042902	lsm8	100	94.792	MGP_PahariEiJ_G0021881	Lsm8	100	98.667	Mus_pahari
ENSAMXG00000042902	lsm8	100	94.792	MGP_SPRETEiJ_G0029125	-	100	94.792	Mus_spretus
ENSAMXG00000042902	lsm8	100	94.792	ENSMLUG00000006837	-	100	94.792	Myotis_lucifugus
ENSAMXG00000042902	lsm8	100	93.750	ENSMLUG00000027762	-	100	93.750	Myotis_lucifugus
ENSAMXG00000042902	lsm8	100	94.792	ENSNGAG00000016554	Lsm8	100	94.792	Nannospalax_galili
ENSAMXG00000042902	lsm8	100	97.917	ENSNBRG00000014441	lsm8	100	97.917	Neolamprologus_brichardi
ENSAMXG00000042902	lsm8	100	94.792	ENSNLEG00000011768	LSM8	100	94.792	Nomascus_leucogenys
ENSAMXG00000042902	lsm8	100	83.333	ENSMEUG00000007801	LSM8	100	83.333	Notamacropus_eugenii
ENSAMXG00000042902	lsm8	89	97.647	ENSOPRG00000014809	LSM8	100	97.647	Ochotona_princeps
ENSAMXG00000042902	lsm8	90	77.907	ENSODEG00000020290	-	100	77.907	Octodon_degus
ENSAMXG00000042902	lsm8	100	94.792	ENSODEG00000000418	-	100	94.792	Octodon_degus
ENSAMXG00000042902	lsm8	100	93.750	ENSOANG00000014536	LSM8	100	93.750	Ornithorhynchus_anatinus
ENSAMXG00000042902	lsm8	100	93.814	ENSOCUG00000017359	LSM8	100	93.814	Oryctolagus_cuniculus
ENSAMXG00000042902	lsm8	100	86.458	ENSORLG00000017432	lsm8	100	86.458	Oryzias_latipes
ENSAMXG00000042902	lsm8	100	86.458	ENSORLG00020004376	lsm8	100	86.458	Oryzias_latipes_hni
ENSAMXG00000042902	lsm8	100	97.917	ENSORLG00015003757	lsm8	100	97.917	Oryzias_latipes_hsok
ENSAMXG00000042902	lsm8	100	84.375	ENSOMEG00000022509	lsm8	100	85.417	Oryzias_melastigma
ENSAMXG00000042902	lsm8	100	94.792	ENSOGAG00000013377	LSM8	100	94.792	Otolemur_garnettii
ENSAMXG00000042902	lsm8	100	94.792	ENSOARG00000017974	LSM8	100	94.792	Ovis_aries
ENSAMXG00000042902	lsm8	78	98.667	ENSPPAG00000043228	-	100	98.667	Pan_paniscus
ENSAMXG00000042902	lsm8	100	94.792	ENSPPRG00000006444	LSM8	100	94.792	Panthera_pardus
ENSAMXG00000042902	lsm8	100	94.792	ENSPTIG00000004722	LSM8	100	94.792	Panthera_tigris_altaica
ENSAMXG00000042902	lsm8	78	98.667	ENSPTRG00000046596	-	100	98.667	Pan_troglodytes
ENSAMXG00000042902	lsm8	100	88.542	ENSPANG00000019395	-	100	88.542	Papio_anubis
ENSAMXG00000042902	lsm8	100	94.792	ENSPANG00000035470	-	100	95.946	Papio_anubis
ENSAMXG00000042902	lsm8	89	97.647	ENSPKIG00000006092	lsm8	86	97.647	Paramormyrops_kingsleyae
ENSAMXG00000042902	lsm8	78	98.667	ENSPSIG00000017054	LSM8	100	98.667	Pelodiscus_sinensis
ENSAMXG00000042902	lsm8	78	98.667	ENSPMGG00000016442	lsm8	100	98.667	Periophthalmus_magnuspinnatus
ENSAMXG00000042902	lsm8	77	95.946	ENSPEMG00000009153	Lsm8	100	95.946	Peromyscus_maniculatus_bairdii
ENSAMXG00000042902	lsm8	97	95.699	ENSPCIG00000021467	LSM8	98	95.699	Phascolarctos_cinereus
ENSAMXG00000042902	lsm8	100	96.875	ENSPFOG00000012340	lsm8	100	96.875	Poecilia_formosa
ENSAMXG00000042902	lsm8	100	87.500	ENSPLAG00000000516	lsm8	100	87.500	Poecilia_latipinna
ENSAMXG00000042902	lsm8	100	96.875	ENSPMEG00000022567	lsm8	100	96.875	Poecilia_mexicana
ENSAMXG00000042902	lsm8	76	86.250	ENSPREG00000005527	lsm8	72	86.250	Poecilia_reticulata
ENSAMXG00000042902	lsm8	100	94.792	ENSPPYG00000017942	LSM8	100	94.792	Pongo_abelii
ENSAMXG00000042902	lsm8	97	75.269	ENSPCOG00000017982	-	97	75.269	Propithecus_coquereli
ENSAMXG00000042902	lsm8	100	94.792	ENSPCOG00000003309	-	100	94.792	Propithecus_coquereli
ENSAMXG00000042902	lsm8	89	96.471	ENSPVAG00000000990	LSM8	100	96.471	Pteropus_vampyrus
ENSAMXG00000042902	lsm8	100	97.917	ENSPNYG00000011448	lsm8	100	97.917	Pundamilia_nyererei
ENSAMXG00000042902	lsm8	100	100.000	ENSPNAG00000010252	lsm8	100	100.000	Pygocentrus_nattereri
ENSAMXG00000042902	lsm8	100	94.792	ENSRNOG00000058677	Lsm8	100	94.792	Rattus_norvegicus
ENSAMXG00000042902	lsm8	100	94.792	ENSRBIG00000032851	LSM8	100	95.946	Rhinopithecus_bieti
ENSAMXG00000042902	lsm8	100	94.792	ENSRROG00000039618	LSM8	100	95.946	Rhinopithecus_roxellana
ENSAMXG00000042902	lsm8	100	94.792	ENSSBOG00000023223	LSM8	100	95.946	Saimiri_boliviensis_boliviensis
ENSAMXG00000042902	lsm8	100	94.792	ENSSHAG00000018435	-	100	94.792	Sarcophilus_harrisii
ENSAMXG00000042902	lsm8	100	96.875	ENSSFOG00015004412	lsm8	100	96.875	Scleropages_formosus
ENSAMXG00000042902	lsm8	78	96.000	ENSSMAG00000009458	lsm8	100	96.000	Scophthalmus_maximus
ENSAMXG00000042902	lsm8	100	97.917	ENSSDUG00000014702	lsm8	100	97.917	Seriola_dumerili
ENSAMXG00000042902	lsm8	78	98.667	ENSSLDG00000016870	lsm8	100	98.667	Seriola_lalandi_dorsalis
ENSAMXG00000042902	lsm8	75	98.611	ENSSARG00000009628	-	100	98.611	Sorex_araneus
ENSAMXG00000042902	lsm8	100	94.792	ENSSPUG00000017419	LSM8	100	94.792	Sphenodon_punctatus
ENSAMXG00000042902	lsm8	100	97.917	ENSSPAG00000021422	lsm8	100	97.917	Stegastes_partitus
ENSAMXG00000042902	lsm8	100	94.792	ENSSSCG00000021652	LSM8	100	94.792	Sus_scrofa
ENSAMXG00000042902	lsm8	100	94.792	ENSTGUG00000016823	-	100	94.792	Taeniopygia_guttata
ENSAMXG00000042902	lsm8	100	95.833	ENSTGUG00000004730	-	100	95.833	Taeniopygia_guttata
ENSAMXG00000042902	lsm8	100	97.917	ENSTRUG00000025192	lsm8	100	97.917	Takifugu_rubripes
ENSAMXG00000042902	lsm8	100	97.917	ENSTNIG00000002864	lsm8	100	97.917	Tetraodon_nigroviridis
ENSAMXG00000042902	lsm8	100	94.792	ENSTTRG00000001023	LSM8	100	94.792	Tursiops_truncatus
ENSAMXG00000042902	lsm8	92	94.318	ENSUAMG00000006943	-	92	94.318	Ursus_americanus
ENSAMXG00000042902	lsm8	92	94.318	ENSUMAG00000003073	LSM8	94	94.318	Ursus_maritimus
ENSAMXG00000042902	lsm8	100	94.792	ENSVPAG00000001530	LSM8	100	94.792	Vicugna_pacos
ENSAMXG00000042902	lsm8	78	96.000	ENSVVUG00000013248	-	82	96.000	Vulpes_vulpes
ENSAMXG00000042902	lsm8	93	96.629	ENSXETG00000021829	lsm8	92	96.629	Xenopus_tropicalis
ENSAMXG00000042902	lsm8	100	94.792	ENSXCOG00000012938	lsm8	100	94.792	Xiphophorus_couchianus
ENSAMXG00000042902	lsm8	100	96.875	ENSXMAG00000025919	lsm8	100	96.875	Xiphophorus_maculatus