EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000042940 (Gene tree)
Gene ID: 103031781
Gene Symbol: rnaseh1
Alias: zgc:91971
Full Name: ribonuclease H1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 8186 bases
Position: chr3:42317865-42326050
Accession: 103031781
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000047009	RNase_H	PF00075.24	6.7e-36	1	1
ENSAMXP00000053791	RNase_H	PF00075.24	6.8e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000038887	-	771	-	ENSAMXP00000047009	256 (aa)	-	-
ENSAMXT00000041299	-	780	XM_007260836	ENSAMXP00000053791	259 (aa)	XP_007260898	-

Gene Model

Click here to download ENSAMXG00000042940's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03030	DNA replication	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000042940's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000042940	rnaseh1	97	50.562	ENSG00000171865	RNASEH1	91	50.579	Homo_sapiens
ENSAMXG00000042940	rnaseh1	97	59.124	ENSAPOG00000000412	rnaseh1	97	53.952	Acanthochromis_polyacanthus
ENSAMXG00000042940	rnaseh1	97	49.434	ENSAMEG00000018433	RNASEH1	99	49.123	Ailuropoda_melanoleuca
ENSAMXG00000042940	rnaseh1	97	57.993	ENSACIG00000014666	rnaseh1	95	55.052	Amphilophus_citrinellus
ENSAMXG00000042940	rnaseh1	97	58.759	ENSAOCG00000015210	rnaseh1	97	54.296	Amphiprion_ocellaris
ENSAMXG00000042940	rnaseh1	97	59.124	ENSAPEG00000014104	rnaseh1	97	54.983	Amphiprion_percula
ENSAMXG00000042940	rnaseh1	97	60.806	ENSATEG00000000598	rnaseh1	94	60.806	Anabas_testudineus
ENSAMXG00000042940	rnaseh1	91	49.808	ENSAPLG00000001961	RNASEH1	99	49.808	Anas_platyrhynchos
ENSAMXG00000042940	rnaseh1	96	43.345	ENSACAG00000016857	rnaseh1	91	43.345	Anolis_carolinensis
ENSAMXG00000042940	rnaseh1	97	52.060	ENSANAG00000024055	RNASEH1	91	52.510	Aotus_nancymaae
ENSAMXG00000042940	rnaseh1	97	57.040	ENSACLG00000006741	rnaseh1	95	53.378	Astatotilapia_calliptera
ENSAMXG00000042940	rnaseh1	96	52.652	ENSBTAG00000016235	RNASEH1	90	53.725	Bos_taurus
ENSAMXG00000042940	rnaseh1	99	37.918	WBGene00004382	rnh-1.0	98	37.918	Caenorhabditis_elegans
ENSAMXG00000042940	rnaseh1	97	50.185	ENSCJAG00000035450	RNASEH1	91	50.570	Callithrix_jacchus
ENSAMXG00000042940	rnaseh1	97	50.566	ENSCAFG00000003259	RNASEH1	90	50.566	Canis_familiaris
ENSAMXG00000042940	rnaseh1	54	61.438	ENSCAFG00020004994	RNASEH1	99	61.438	Canis_lupus_dingo
ENSAMXG00000042940	rnaseh1	96	52.107	ENSCHIG00000022264	-	89	53.333	Capra_hircus
ENSAMXG00000042940	rnaseh1	87	40.586	ENSCHIG00000022230	-	98	41.304	Capra_hircus
ENSAMXG00000042940	rnaseh1	98	50.373	ENSTSYG00000012926	RNASEH1	90	52.308	Carlito_syrichta
ENSAMXG00000042940	rnaseh1	91	51.600	ENSCAPG00000004813	RNASEH1	99	52.500	Cavia_aperea
ENSAMXG00000042940	rnaseh1	97	52.060	ENSCPOG00000022278	Rnaseh1	87	52.918	Cavia_porcellus
ENSAMXG00000042940	rnaseh1	97	50.558	ENSCCAG00000038017	RNASEH1	91	50.958	Cebus_capucinus
ENSAMXG00000042940	rnaseh1	97	51.311	ENSCATG00000016515	-	91	51.311	Cercocebus_atys
ENSAMXG00000042940	rnaseh1	97	47.925	ENSCATG00000016818	-	90	47.925	Cercocebus_atys
ENSAMXG00000042940	rnaseh1	97	52.222	ENSCLAG00000002440	RNASEH1	98	51.613	Chinchilla_lanigera
ENSAMXG00000042940	rnaseh1	97	50.936	ENSCSAG00000006943	RNASEH1	91	50.936	Chlorocebus_sabaeus
ENSAMXG00000042940	rnaseh1	54	62.745	ENSCHOG00000008547	RNASEH1	75	62.745	Choloepus_hoffmanni
ENSAMXG00000042940	rnaseh1	96	50.554	ENSCPBG00000021620	RNASEH1	98	50.554	Chrysemys_picta_bellii
ENSAMXG00000042940	rnaseh1	96	38.652	ENSCING00000014054	-	92	38.652	Ciona_intestinalis
ENSAMXG00000042940	rnaseh1	85	37.946	ENSCSAVG00000000009	-	94	39.726	Ciona_savignyi
ENSAMXG00000042940	rnaseh1	97	51.311	ENSCANG00000037763	RNASEH1	91	51.311	Colobus_angolensis_palliatus
ENSAMXG00000042940	rnaseh1	96	50.376	ENSCGRG00001008950	Rnaseh1	89	51.953	Cricetulus_griseus_chok1gshd
ENSAMXG00000042940	rnaseh1	96	50.376	ENSCGRG00000006029	Rnaseh1	89	51.953	Cricetulus_griseus_crigri
ENSAMXG00000042940	rnaseh1	97	55.970	ENSCSEG00000005741	rnaseh1	94	54.839	Cynoglossus_semilaevis
ENSAMXG00000042940	rnaseh1	97	57.299	ENSCVAG00000018717	rnaseh1	96	54.452	Cyprinodon_variegatus
ENSAMXG00000042940	rnaseh1	100	62.230	ENSDARG00000042571	rnaseh1	100	62.230	Danio_rerio
ENSAMXG00000042940	rnaseh1	97	49.057	ENSDNOG00000016056	RNASEH1	90	49.057	Dasypus_novemcinctus
ENSAMXG00000042940	rnaseh1	96	47.893	ENSDORG00000000704	Rnaseh1	96	48.000	Dipodomys_ordii
ENSAMXG00000042940	rnaseh1	96	34.932	FBgn0023171	rnh1	93	35.395	Drosophila_melanogaster
ENSAMXG00000042940	rnaseh1	97	48.302	ENSETEG00000012674	RNASEH1	90	48.302	Echinops_telfairi
ENSAMXG00000042940	rnaseh1	96	42.045	ENSEBUG00000006116	rnaseh1	78	42.045	Eptatretus_burgeri
ENSAMXG00000042940	rnaseh1	95	43.793	ENSEBUG00000008898	rnaseh1	97	43.793	Eptatretus_burgeri
ENSAMXG00000042940	rnaseh1	97	49.057	ENSEASG00005022200	RNASEH1	89	51.154	Equus_asinus_asinus
ENSAMXG00000042940	rnaseh1	97	49.057	ENSECAG00000020695	RNASEH1	89	51.154	Equus_caballus
ENSAMXG00000042940	rnaseh1	97	58.909	ENSELUG00000010112	rnaseh1	99	54.237	Esox_lucius
ENSAMXG00000042940	rnaseh1	98	50.000	ENSFCAG00000025832	RNASEH1	99	49.648	Felis_catus
ENSAMXG00000042940	rnaseh1	99	48.951	ENSFALG00000002069	RNASEH1	95	48.958	Ficedula_albicollis
ENSAMXG00000042940	rnaseh1	97	49.064	ENSFDAG00000002035	RNASEH1	80	50.965	Fukomys_damarensis
ENSAMXG00000042940	rnaseh1	98	57.090	ENSGMOG00000013818	rnaseh1	98	56.115	Gadus_morhua
ENSAMXG00000042940	rnaseh1	98	50.338	ENSGALG00000016389	RNASEH1	99	48.986	Gallus_gallus
ENSAMXG00000042940	rnaseh1	97	54.152	ENSGAFG00000001776	rnaseh1	99	51.027	Gambusia_affinis
ENSAMXG00000042940	rnaseh1	97	59.636	ENSGACG00000011935	rnaseh1	98	55.932	Gasterosteus_aculeatus
ENSAMXG00000042940	rnaseh1	96	52.030	ENSGAGG00000009150	RNASEH1	69	46.689	Gopherus_agassizii
ENSAMXG00000042940	rnaseh1	97	49.630	ENSGGOG00000034822	RNASEH1	91	50.193	Gorilla_gorilla
ENSAMXG00000042940	rnaseh1	97	55.596	ENSHBUG00000004666	rnaseh1	95	53.041	Haplochromis_burtoni
ENSAMXG00000042940	rnaseh1	97	51.111	ENSHGLG00000002585	Rnaseh1	83	52.529	Heterocephalus_glaber_female
ENSAMXG00000042940	rnaseh1	97	51.111	ENSHGLG00100005105	Rnaseh1	83	52.529	Heterocephalus_glaber_male
ENSAMXG00000042940	rnaseh1	97	57.565	ENSHCOG00000012329	rnaseh1	98	53.356	Hippocampus_comes
ENSAMXG00000042940	rnaseh1	98	63.177	ENSIPUG00000023060	rnaseh1	99	63.177	Ictalurus_punctatus
ENSAMXG00000042940	rnaseh1	97	50.562	ENSSTOG00000012774	RNASEH1	92	51.163	Ictidomys_tridecemlineatus
ENSAMXG00000042940	rnaseh1	89	50.206	ENSJJAG00000020238	Rnaseh1	91	48.750	Jaculus_jaculus
ENSAMXG00000042940	rnaseh1	93	39.453	ENSJJAG00000008994	-	88	39.453	Jaculus_jaculus
ENSAMXG00000042940	rnaseh1	98	44.444	ENSJJAG00000021481	-	98	43.158	Jaculus_jaculus
ENSAMXG00000042940	rnaseh1	97	56.015	ENSKMAG00000001373	rnaseh1	93	52.941	Kryptolebias_marmoratus
ENSAMXG00000042940	rnaseh1	97	59.398	ENSLBEG00000004480	rnaseh1	96	59.176	Labrus_bergylta
ENSAMXG00000042940	rnaseh1	99	53.004	ENSLACG00000007100	RNASEH1	95	49.662	Latimeria_chalumnae
ENSAMXG00000042940	rnaseh1	97	58.456	ENSLOCG00000017212	rnaseh1	97	58.672	Lepisosteus_oculatus
ENSAMXG00000042940	rnaseh1	97	47.619	ENSLAFG00000015091	RNASEH1	90	49.615	Loxodonta_africana
ENSAMXG00000042940	rnaseh1	97	50.936	ENSMFAG00000000063	-	91	50.936	Macaca_fascicularis
ENSAMXG00000042940	rnaseh1	97	48.679	ENSMFAG00000002323	-	90	48.679	Macaca_fascicularis
ENSAMXG00000042940	rnaseh1	97	47.925	ENSMMUG00000019280	-	90	47.925	Macaca_mulatta
ENSAMXG00000042940	rnaseh1	97	51.311	ENSMNEG00000040183	-	91	51.311	Macaca_nemestrina
ENSAMXG00000042940	rnaseh1	97	47.925	ENSMNEG00000029676	-	90	47.925	Macaca_nemestrina
ENSAMXG00000042940	rnaseh1	97	49.434	ENSMLEG00000028662	-	90	49.434	Mandrillus_leucophaeus
ENSAMXG00000042940	rnaseh1	91	50.800	ENSMLEG00000039352	-	99	50.800	Mandrillus_leucophaeus
ENSAMXG00000042940	rnaseh1	97	58.242	ENSMAMG00000019725	rnaseh1	94	58.242	Mastacembelus_armatus
ENSAMXG00000042940	rnaseh1	97	57.040	ENSMZEG00005013006	rnaseh1	95	53.378	Maylandia_zebra
ENSAMXG00000042940	rnaseh1	85	48.980	ENSMGAG00000013979	RNASEH1	98	49.378	Meleagris_gallopavo
ENSAMXG00000042940	rnaseh1	97	49.259	ENSMAUG00000014957	Rnaseh1	91	50.763	Mesocricetus_auratus
ENSAMXG00000042940	rnaseh1	97	52.985	ENSMICG00000033156	RNASEH1	90	54.864	Microcebus_murinus
ENSAMXG00000042940	rnaseh1	97	50.554	ENSMOCG00000015522	Rnaseh1	91	50.951	Microtus_ochrogaster
ENSAMXG00000042940	rnaseh1	97	56.827	ENSMMOG00000015902	rnaseh1	96	53.169	Mola_mola
ENSAMXG00000042940	rnaseh1	76	43.805	ENSMODG00000028814	-	91	44.248	Monodelphis_domestica
ENSAMXG00000042940	rnaseh1	96	50.570	ENSMODG00000014491	-	90	50.781	Monodelphis_domestica
ENSAMXG00000042940	rnaseh1	97	57.565	ENSMALG00000010565	rnaseh1	96	52.414	Monopterus_albus
ENSAMXG00000042940	rnaseh1	97	49.259	MGP_CAROLIEiJ_G0017660	Rnaseh1	94	48.551	Mus_caroli
ENSAMXG00000042940	rnaseh1	97	48.708	ENSMUSG00000020630	Rnaseh1	94	48.188	Mus_musculus
ENSAMXG00000042940	rnaseh1	97	49.259	MGP_PahariEiJ_G0029418	Rnaseh1	91	50.000	Mus_pahari
ENSAMXG00000042940	rnaseh1	97	49.442	MGP_SPRETEiJ_G0018502	Rnaseh1	94	48.727	Mus_spretus
ENSAMXG00000042940	rnaseh1	66	53.500	ENSMPUG00000012984	RNASEH1	97	53.500	Mustela_putorius_furo
ENSAMXG00000042940	rnaseh1	97	50.373	ENSNGAG00000015966	Rnaseh1	85	50.385	Nannospalax_galili
ENSAMXG00000042940	rnaseh1	97	57.040	ENSNBRG00000008739	rnaseh1	95	53.041	Neolamprologus_brichardi
ENSAMXG00000042940	rnaseh1	87	46.667	ENSNLEG00000000059	-	81	51.152	Nomascus_leucogenys
ENSAMXG00000042940	rnaseh1	97	49.200	ENSNLEG00000015400	RNASEH1	89	50.207	Nomascus_leucogenys
ENSAMXG00000042940	rnaseh1	75	42.929	ENSMEUG00000003610	-	65	46.995	Notamacropus_eugenii
ENSAMXG00000042940	rnaseh1	97	47.940	ENSOPRG00000005072	RNASEH1	90	50.769	Ochotona_princeps
ENSAMXG00000042940	rnaseh1	97	51.685	ENSODEG00000000235	Rnaseh1	94	52.143	Octodon_degus
ENSAMXG00000042940	rnaseh1	97	56.115	ENSONIG00000018697	rnaseh1	98	56.115	Oreochromis_niloticus
ENSAMXG00000042940	rnaseh1	97	48.120	ENSOCUG00000006117	RNASEH1	91	49.808	Oryctolagus_cuniculus
ENSAMXG00000042940	rnaseh1	97	57.401	ENSORLG00000018127	rnaseh1	95	58.736	Oryzias_latipes
ENSAMXG00000042940	rnaseh1	97	57.401	ENSORLG00020013660	rnaseh1	96	53.819	Oryzias_latipes_hni
ENSAMXG00000042940	rnaseh1	97	57.401	ENSORLG00015011338	rnaseh1	96	53.819	Oryzias_latipes_hsok
ENSAMXG00000042940	rnaseh1	90	55.918	ENSOMEG00000004710	rnaseh1	91	55.918	Oryzias_melastigma
ENSAMXG00000042940	rnaseh1	96	52.471	ENSOGAG00000017176	RNASEH1	98	50.177	Otolemur_garnettii
ENSAMXG00000042940	rnaseh1	96	46.992	ENSOARG00000005386	RNASEH1	89	48.462	Ovis_aries
ENSAMXG00000042940	rnaseh1	97	50.562	ENSPPAG00000034221	RNASEH1	91	50.579	Pan_paniscus
ENSAMXG00000042940	rnaseh1	98	49.650	ENSPPRG00000015513	RNASEH1	99	49.296	Panthera_pardus
ENSAMXG00000042940	rnaseh1	90	49.798	ENSPTIG00000019034	RNASEH1	84	51.464	Panthera_tigris_altaica
ENSAMXG00000042940	rnaseh1	85	50.228	ENSPTRG00000043403	-	81	49.296	Pan_troglodytes
ENSAMXG00000042940	rnaseh1	97	50.562	ENSPTRG00000011614	RNASEH1	91	50.579	Pan_troglodytes
ENSAMXG00000042940	rnaseh1	97	50.593	ENSPANG00000018246	-	90	50.593	Papio_anubis
ENSAMXG00000042940	rnaseh1	97	51.311	ENSPANG00000000443	RNASEH1	99	50.996	Papio_anubis
ENSAMXG00000042940	rnaseh1	98	57.455	ENSPKIG00000003146	rnaseh1	99	57.818	Paramormyrops_kingsleyae
ENSAMXG00000042940	rnaseh1	96	48.529	ENSPSIG00000002937	RNASEH1	99	48.529	Pelodiscus_sinensis
ENSAMXG00000042940	rnaseh1	97	53.788	ENSPMGG00000017463	rnaseh1	99	52.190	Periophthalmus_magnuspinnatus
ENSAMXG00000042940	rnaseh1	97	48.496	ENSPEMG00000022465	-	91	49.808	Peromyscus_maniculatus_bairdii
ENSAMXG00000042940	rnaseh1	96	48.659	ENSPCIG00000023334	-	90	50.391	Phascolarctos_cinereus
ENSAMXG00000042940	rnaseh1	56	35.185	ENSPCIG00000026047	-	91	35.185	Phascolarctos_cinereus
ENSAMXG00000042940	rnaseh1	97	55.839	ENSPFOG00000002841	rnaseh1	99	50.172	Poecilia_formosa
ENSAMXG00000042940	rnaseh1	76	47.938	ENSPLAG00000021349	-	85	43.868	Poecilia_latipinna
ENSAMXG00000042940	rnaseh1	97	56.877	ENSPMEG00000016826	rnaseh1	96	52.297	Poecilia_mexicana
ENSAMXG00000042940	rnaseh1	97	57.246	ENSPREG00000012197	rnaseh1	99	50.336	Poecilia_reticulata
ENSAMXG00000042940	rnaseh1	85	50.909	ENSPPYG00000008067	-	82	51.402	Pongo_abelii
ENSAMXG00000042940	rnaseh1	97	40.449	ENSPPYG00000025873	RNASEH1	89	41.016	Pongo_abelii
ENSAMXG00000042940	rnaseh1	96	48.106	ENSPCAG00000002500	RNASEH1	89	51.373	Procavia_capensis
ENSAMXG00000042940	rnaseh1	97	46.642	ENSPCOG00000019444	RNASEH1	89	47.471	Propithecus_coquereli
ENSAMXG00000042940	rnaseh1	97	49.434	ENSPVAG00000002070	RNASEH1	91	51.163	Pteropus_vampyrus
ENSAMXG00000042940	rnaseh1	97	56.679	ENSPNYG00000001292	rnaseh1	95	53.041	Pundamilia_nyererei
ENSAMXG00000042940	rnaseh1	100	70.833	ENSPNAG00000022344	rnaseh1	100	70.833	Pygocentrus_nattereri
ENSAMXG00000042940	rnaseh1	99	47.552	ENSRNOG00000008584	Rnaseh1	98	47.387	Rattus_norvegicus
ENSAMXG00000042940	rnaseh1	97	50.562	ENSRBIG00000034222	RNASEH1	90	50.562	Rhinopithecus_bieti
ENSAMXG00000042940	rnaseh1	97	50.562	ENSRROG00000041761	RNASEH1	90	50.562	Rhinopithecus_roxellana
ENSAMXG00000042940	rnaseh1	97	50.558	ENSSBOG00000025411	RNASEH1	91	50.958	Saimiri_boliviensis_boliviensis
ENSAMXG00000042940	rnaseh1	96	51.341	ENSSHAG00000013051	RNASEH1	96	49.104	Sarcophilus_harrisii
ENSAMXG00000042940	rnaseh1	97	58.214	ENSSFOG00015002709	rnaseh1	99	58.123	Scleropages_formosus
ENSAMXG00000042940	rnaseh1	97	59.273	ENSSMAG00000007586	rnaseh1	96	55.363	Scophthalmus_maximus
ENSAMXG00000042940	rnaseh1	98	58.333	ENSSDUG00000008217	rnaseh1	95	57.554	Seriola_dumerili
ENSAMXG00000042940	rnaseh1	90	58.103	ENSSLDG00000000442	rnaseh1	94	56.800	Seriola_lalandi_dorsalis
ENSAMXG00000042940	rnaseh1	98	47.464	ENSSPUG00000006644	RNASEH1	98	46.488	Sphenodon_punctatus
ENSAMXG00000042940	rnaseh1	97	58.394	ENSSPAG00000009353	rnaseh1	96	54.639	Stegastes_partitus
ENSAMXG00000042940	rnaseh1	98	51.493	ENSSSCG00000025305	RNASEH1	91	52.692	Sus_scrofa
ENSAMXG00000042940	rnaseh1	99	48.944	ENSTGUG00000012980	RNASEH1	95	48.264	Taeniopygia_guttata
ENSAMXG00000042940	rnaseh1	98	54.513	ENSTRUG00000015774	rnaseh1	97	54.513	Takifugu_rubripes
ENSAMXG00000042940	rnaseh1	98	56.569	ENSTNIG00000010715	rnaseh1	97	56.569	Tetraodon_nigroviridis
ENSAMXG00000042940	rnaseh1	97	47.940	ENSTTRG00000001615	RNASEH1	90	47.940	Tursiops_truncatus
ENSAMXG00000042940	rnaseh1	54	61.438	ENSUAMG00000018254	RNASEH1	79	61.438	Ursus_americanus
ENSAMXG00000042940	rnaseh1	79	50.246	ENSUMAG00000003941	RNASEH1	65	51.777	Ursus_maritimus
ENSAMXG00000042940	rnaseh1	96	46.008	ENSVPAG00000011589	RNASEH1	89	46.008	Vicugna_pacos
ENSAMXG00000042940	rnaseh1	97	50.566	ENSVVUG00000008633	RNASEH1	81	50.566	Vulpes_vulpes
ENSAMXG00000042940	rnaseh1	98	46.918	ENSXETG00000001212	rnaseh1	99	46.918	Xenopus_tropicalis
ENSAMXG00000042940	rnaseh1	95	35.521	ENSXETG00000030371	-	98	37.959	Xenopus_tropicalis
ENSAMXG00000042940	rnaseh1	97	54.909	ENSXMAG00000002357	rnaseh1	99	49.141	Xiphophorus_maculatus