EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000042946 (Gene tree)
Gene ID: -
Gene Symbol: hnrnpc
Alias: fb57h12|fi16b11|wu:fb57h12|wu:fi16b11|zgc:55701
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 5063 bases
Position: chr16:1492524-1497586
Accession: 111194257
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000049087	RRM_1	PF00076.22	2.5e-10	1	1
ENSAMXP00000042578	RRM_1	PF00076.22	2.5e-10	1	1
ENSAMXP00000040758	RRM_1	PF00076.22	3.1e-10	1	1
ENSAMXP00000037334	RRM_1	PF00076.22	4.1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000051309	-	708	-	ENSAMXP00000040758	235 (aa)	-	-
ENSAMXT00000032329	-	582	-	ENSAMXP00000042578	193 (aa)	-	-
ENSAMXT00000036770	-	807	-	ENSAMXP00000049087	268 (aa)	-	-
ENSAMXT00000033930	-	774	XM_022677762	ENSAMXP00000037334	257 (aa)	XP_022533483	-

Gene Model

Click here to download ENSAMXG00000042946's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000042946's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000042946	hnrnpc	97	48.241	ENSAMXG00000019031	-	66	50.754
ENSAMXG00000042946	hnrnpc	95	48.969	ENSAMXG00000032617	-	63	50.000
ENSAMXG00000042946	hnrnpc	97	76.316	ENSAMXG00000034915	zgc:55733	70	78.238

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000042946	hnrnpc	95	53.439	ENSG00000184672	RALYL	58	77.551	Homo_sapiens
ENSAMXG00000042946	hnrnpc	97	79.581	ENSAPOG00000006963	hnrnpc	68	76.555	Acanthochromis_polyacanthus
ENSAMXG00000042946	hnrnpc	99	74.872	ENSACIG00000000270	-	74	79.793	Amphilophus_citrinellus
ENSAMXG00000042946	hnrnpc	98	76.440	ENSACIG00000016568	-	75	78.788	Amphilophus_citrinellus
ENSAMXG00000042946	hnrnpc	97	79.581	ENSAOCG00000003896	-	68	76.555	Amphiprion_ocellaris
ENSAMXG00000042946	hnrnpc	100	73.980	ENSAOCG00000021616	-	68	78.218	Amphiprion_ocellaris
ENSAMXG00000042946	hnrnpc	97	79.581	ENSAPEG00000001489	-	68	76.555	Amphiprion_percula
ENSAMXG00000042946	hnrnpc	97	75.916	ENSAPEG00000019962	-	66	79.275	Amphiprion_percula
ENSAMXG00000042946	hnrnpc	98	75.393	ENSATEG00000018006	-	70	80.729	Anabas_testudineus
ENSAMXG00000042946	hnrnpc	97	75.393	ENSATEG00000011734	-	70	76.667	Anabas_testudineus
ENSAMXG00000042946	hnrnpc	95	47.761	ENSAPLG00000015574	RALYL	71	46.919	Anas_platyrhynchos
ENSAMXG00000042946	hnrnpc	95	46.766	ENSACAG00000028464	RALYL	71	46.445	Anolis_carolinensis
ENSAMXG00000042946	hnrnpc	95	52.406	ENSANAG00000023383	RALYL	68	49.510	Aotus_nancymaae
ENSAMXG00000042946	hnrnpc	95	73.656	ENSACLG00000013636	-	70	80.476	Astatotilapia_calliptera
ENSAMXG00000042946	hnrnpc	97	75.393	ENSACLG00000005707	-	72	77.619	Astatotilapia_calliptera
ENSAMXG00000042946	hnrnpc	99	77.551	ENSACLG00000000995	-	72	77.949	Astatotilapia_calliptera
ENSAMXG00000042946	hnrnpc	95	53.439	ENSCJAG00000000402	RALYL	65	52.406	Callithrix_jacchus
ENSAMXG00000042946	hnrnpc	94	49.495	ENSCPOG00000012314	RALYL	69	48.293	Cavia_porcellus
ENSAMXG00000042946	hnrnpc	95	53.439	ENSCCAG00000025003	RALYL	68	49.510	Cebus_capucinus
ENSAMXG00000042946	hnrnpc	95	53.439	ENSCATG00000042145	RALYL	68	50.000	Cercocebus_atys
ENSAMXG00000042946	hnrnpc	94	49.495	ENSCLAG00000005228	RALYL	69	48.293	Chinchilla_lanigera
ENSAMXG00000042946	hnrnpc	95	46.766	ENSCHOG00000013228	RALYL	67	44.860	Choloepus_hoffmanni
ENSAMXG00000042946	hnrnpc	95	53.439	ENSCANG00000039144	RALYL	68	50.000	Colobus_angolensis_palliatus
ENSAMXG00000042946	hnrnpc	95	48.756	ENSCGRG00001009241	Ralyl	69	48.544	Cricetulus_griseus_chok1gshd
ENSAMXG00000042946	hnrnpc	98	72.917	ENSCSEG00000021349	-	88	63.043	Cynoglossus_semilaevis
ENSAMXG00000042946	hnrnpc	98	64.433	ENSCSEG00000019769	-	65	69.948	Cynoglossus_semilaevis
ENSAMXG00000042946	hnrnpc	97	60.317	ENSCVAG00000002797	-	70	56.604	Cyprinodon_variegatus
ENSAMXG00000042946	hnrnpc	99	77.041	ENSCVAG00000016981	-	88	62.021	Cyprinodon_variegatus
ENSAMXG00000042946	hnrnpc	97	80.311	ENSDARG00000053810	hnrnpc	88	65.493	Danio_rerio
ENSAMXG00000042946	hnrnpc	97	78.947	ENSDARG00000103845	zgc:55733	76	75.243	Danio_rerio
ENSAMXG00000042946	hnrnpc	95	49.254	ENSDORG00000003721	Ralyl	69	48.544	Dipodomys_ordii
ENSAMXG00000042946	hnrnpc	69	49.664	ENSETEG00000014028	RALYL	69	54.015	Echinops_telfairi
ENSAMXG00000042946	hnrnpc	97	38.835	ENSEBUG00000012363	hnrnpc	57	41.451	Eptatretus_burgeri
ENSAMXG00000042946	hnrnpc	94	45.989	ENSEBUG00000006049	RALYL	67	42.347	Eptatretus_burgeri
ENSAMXG00000042946	hnrnpc	95	49.254	ENSEEUG00000007202	RALYL	72	49.048	Erinaceus_europaeus
ENSAMXG00000042946	hnrnpc	97	72.906	ENSELUG00000007714	-	75	71.689	Esox_lucius
ENSAMXG00000042946	hnrnpc	97	77.202	ENSELUG00000004132	-	72	78.404	Esox_lucius
ENSAMXG00000042946	hnrnpc	95	51.309	ENSFALG00000008647	RALYL	85	51.852	Ficedula_albicollis
ENSAMXG00000042946	hnrnpc	97	74.396	ENSFHEG00000007278	-	69	72.889	Fundulus_heteroclitus
ENSAMXG00000042946	hnrnpc	97	72.917	ENSFHEG00000003605	-	69	73.934	Fundulus_heteroclitus
ENSAMXG00000042946	hnrnpc	94	51.872	ENSGALG00000036938	RALYL	70	46.919	Gallus_gallus
ENSAMXG00000042946	hnrnpc	99	73.057	ENSGAFG00000020992	-	91	62.898	Gambusia_affinis
ENSAMXG00000042946	hnrnpc	100	71.000	ENSGAFG00000020486	-	80	71.831	Gambusia_affinis
ENSAMXG00000042946	hnrnpc	98	80.513	ENSGACG00000017772	-	81	77.358	Gasterosteus_aculeatus
ENSAMXG00000042946	hnrnpc	99	65.979	ENSGACG00000018932	-	77	65.625	Gasterosteus_aculeatus
ENSAMXG00000042946	hnrnpc	95	53.439	ENSGGOG00000000841	RALYL	68	50.000	Gorilla_gorilla
ENSAMXG00000042946	hnrnpc	97	75.130	ENSHBUG00000010527	-	66	77.358	Haplochromis_burtoni
ENSAMXG00000042946	hnrnpc	95	74.194	ENSHBUG00000018342	-	68	80.952	Haplochromis_burtoni
ENSAMXG00000042946	hnrnpc	94	48.990	ENSHGLG00000004866	RALYL	69	47.805	Heterocephalus_glaber_female
ENSAMXG00000042946	hnrnpc	94	48.990	ENSHGLG00100017480	RALYL	69	47.805	Heterocephalus_glaber_male
ENSAMXG00000042946	hnrnpc	97	75.369	ENSHCOG00000012333	hnrnpc	73	71.622	Hippocampus_comes
ENSAMXG00000042946	hnrnpc	98	76.440	ENSIPUG00000008666	zgc:55733	84	76.596	Ictalurus_punctatus
ENSAMXG00000042946	hnrnpc	97	80.105	ENSIPUG00000011271	hnrnpc	87	86.000	Ictalurus_punctatus
ENSAMXG00000042946	hnrnpc	94	49.246	ENSSTOG00000012583	RALYL	70	48.058	Ictidomys_tridecemlineatus
ENSAMXG00000042946	hnrnpc	97	74.479	ENSKMAG00000018265	-	66	77.251	Kryptolebias_marmoratus
ENSAMXG00000042946	hnrnpc	95	75.269	ENSKMAG00000011170	-	68	77.033	Kryptolebias_marmoratus
ENSAMXG00000042946	hnrnpc	97	76.562	ENSLBEG00000006979	-	71	75.120	Labrus_bergylta
ENSAMXG00000042946	hnrnpc	97	75.393	ENSLBEG00000006193	-	66	79.048	Labrus_bergylta
ENSAMXG00000042946	hnrnpc	97	69.154	ENSLBEG00000024418	-	72	67.580	Labrus_bergylta
ENSAMXG00000042946	hnrnpc	95	66.321	ENSLOCG00000002560	hnrnpc	73	66.512	Lepisosteus_oculatus
ENSAMXG00000042946	hnrnpc	95	53.439	ENSMNEG00000033288	RALYL	68	50.000	Macaca_nemestrina
ENSAMXG00000042946	hnrnpc	95	53.439	ENSMLEG00000038284	RALYL	68	50.000	Mandrillus_leucophaeus
ENSAMXG00000042946	hnrnpc	97	75.263	ENSMAMG00000008033	-	73	76.667	Mastacembelus_armatus
ENSAMXG00000042946	hnrnpc	97	81.675	ENSMAMG00000012236	-	67	79.592	Mastacembelus_armatus
ENSAMXG00000042946	hnrnpc	97	75.393	ENSMZEG00005024249	-	67	77.619	Maylandia_zebra
ENSAMXG00000042946	hnrnpc	98	78.351	ENSMZEG00005020460	-	68	80.476	Maylandia_zebra
ENSAMXG00000042946	hnrnpc	95	48.756	ENSMAUG00000015149	Ralyl	69	48.544	Mesocricetus_auratus
ENSAMXG00000042946	hnrnpc	94	53.763	ENSMICG00000005558	RALYL	51	76.000	Microcebus_murinus
ENSAMXG00000042946	hnrnpc	94	49.246	ENSMOCG00000017371	Ralyl	69	49.275	Microtus_ochrogaster
ENSAMXG00000042946	hnrnpc	98	74.869	ENSMMOG00000019520	-	79	76.442	Mola_mola
ENSAMXG00000042946	hnrnpc	97	74.211	ENSMMOG00000021465	-	73	80.383	Mola_mola
ENSAMXG00000042946	hnrnpc	95	71.892	ENSMALG00000007520	-	70	71.500	Monopterus_albus
ENSAMXG00000042946	hnrnpc	97	75.393	ENSMALG00000014623	-	66	76.923	Monopterus_albus
ENSAMXG00000042946	hnrnpc	95	48.500	ENSMUSG00000039717	Ralyl	58	77.551	Mus_musculus
ENSAMXG00000042946	hnrnpc	94	50.000	ENSMPUG00000010724	RALYL	67	49.268	Mustela_putorius_furo
ENSAMXG00000042946	hnrnpc	95	48.756	ENSNGAG00000013375	Ralyl	69	48.544	Nannospalax_galili
ENSAMXG00000042946	hnrnpc	98	76.042	ENSNBRG00000015676	-	68	81.250	Neolamprologus_brichardi
ENSAMXG00000042946	hnrnpc	99	78.974	ENSNBRG00000004912	-	87	72.727	Neolamprologus_brichardi
ENSAMXG00000042946	hnrnpc	95	53.439	ENSNLEG00000002702	RALYL	65	50.000	Nomascus_leucogenys
ENSAMXG00000042946	hnrnpc	92	48.187	ENSOPRG00000013650	-	98	44.949	Ochotona_princeps
ENSAMXG00000042946	hnrnpc	95	49.505	ENSODEG00000001012	RALYL	71	47.867	Octodon_degus
ENSAMXG00000042946	hnrnpc	98	73.096	ENSONIG00000007859	-	75	77.169	Oreochromis_niloticus
ENSAMXG00000042946	hnrnpc	97	75.130	ENSONIG00000018350	-	66	77.358	Oreochromis_niloticus
ENSAMXG00000042946	hnrnpc	99	70.792	ENSORLG00000003144	-	66	74.312	Oryzias_latipes
ENSAMXG00000042946	hnrnpc	97	67.876	ENSORLG00000009999	-	68	64.929	Oryzias_latipes
ENSAMXG00000042946	hnrnpc	97	67.876	ENSORLG00020018228	hnrnpc	68	64.929	Oryzias_latipes_hni
ENSAMXG00000042946	hnrnpc	97	67.876	ENSORLG00015019755	-	68	64.929	Oryzias_latipes_hsok
ENSAMXG00000042946	hnrnpc	99	70.792	ENSORLG00015009460	-	65	74.312	Oryzias_latipes_hsok
ENSAMXG00000042946	hnrnpc	97	68.394	ENSOMEG00000020488	-	68	65.877	Oryzias_melastigma
ENSAMXG00000042946	hnrnpc	99	73.846	ENSOMEG00000022665	-	66	77.725	Oryzias_melastigma
ENSAMXG00000042946	hnrnpc	95	53.439	ENSPPAG00000038705	RALYL	68	50.000	Pan_paniscus
ENSAMXG00000042946	hnrnpc	94	54.011	ENSPPRG00000018612	RALYL	65	53.333	Panthera_pardus
ENSAMXG00000042946	hnrnpc	92	55.495	ENSPTIG00000020331	RALYL	63	54.737	Panthera_tigris_altaica
ENSAMXG00000042946	hnrnpc	95	53.439	ENSPTRG00000020381	RALYL	68	50.000	Pan_troglodytes
ENSAMXG00000042946	hnrnpc	95	53.439	ENSPANG00000029305	RALYL	68	50.000	Papio_anubis
ENSAMXG00000042946	hnrnpc	97	80.208	ENSPKIG00000008592	-	88	66.197	Paramormyrops_kingsleyae
ENSAMXG00000042946	hnrnpc	97	81.675	ENSPKIG00000022837	-	67	79.245	Paramormyrops_kingsleyae
ENSAMXG00000042946	hnrnpc	94	49.246	ENSPSIG00000011135	RALYL	70	47.393	Pelodiscus_sinensis
ENSAMXG00000042946	hnrnpc	98	78.534	ENSPMGG00000013144	-	72	84.492	Periophthalmus_magnuspinnatus
ENSAMXG00000042946	hnrnpc	99	70.256	ENSPMGG00000017774	-	83	58.673	Periophthalmus_magnuspinnatus
ENSAMXG00000042946	hnrnpc	95	48.756	ENSPEMG00000016447	Ralyl	69	48.544	Peromyscus_maniculatus_bairdii
ENSAMXG00000042946	hnrnpc	95	48.768	ENSPMAG00000002407	RALYL	86	47.000	Petromyzon_marinus
ENSAMXG00000042946	hnrnpc	99	73.196	ENSPFOG00000002643	-	88	63.251	Poecilia_formosa
ENSAMXG00000042946	hnrnpc	95	72.487	ENSPFOG00000001583	-	68	72.512	Poecilia_formosa
ENSAMXG00000042946	hnrnpc	95	71.277	ENSPLAG00000015305	-	68	70.952	Poecilia_latipinna
ENSAMXG00000042946	hnrnpc	99	73.196	ENSPLAG00000000061	-	88	62.324	Poecilia_latipinna
ENSAMXG00000042946	hnrnpc	99	73.196	ENSPMEG00000016524	-	88	63.958	Poecilia_mexicana
ENSAMXG00000042946	hnrnpc	95	72.872	ENSPMEG00000004802	-	68	72.986	Poecilia_mexicana
ENSAMXG00000042946	hnrnpc	95	73.404	ENSPREG00000007928	-	68	74.408	Poecilia_reticulata
ENSAMXG00000042946	hnrnpc	97	73.684	ENSPREG00000001852	-	70	75.714	Poecilia_reticulata
ENSAMXG00000042946	hnrnpc	95	48.000	ENSPVAG00000010821	RALYL	68	48.293	Pteropus_vampyrus
ENSAMXG00000042946	hnrnpc	98	76.042	ENSPNYG00000003747	-	71	77.358	Pundamilia_nyererei
ENSAMXG00000042946	hnrnpc	95	78.191	ENSPNYG00000020293	-	71	80.000	Pundamilia_nyererei
ENSAMXG00000042946	hnrnpc	97	90.052	ENSPNAG00000015686	hnrnpc	86	84.462	Pygocentrus_nattereri
ENSAMXG00000042946	hnrnpc	97	75.000	ENSPNAG00000019200	zgc:55733	86	61.390	Pygocentrus_nattereri
ENSAMXG00000042946	hnrnpc	95	53.439	ENSRROG00000023925	RALYL	52	74.510	Rhinopithecus_roxellana
ENSAMXG00000042946	hnrnpc	97	73.298	ENSSFOG00015012015	-	74	78.756	Scleropages_formosus
ENSAMXG00000042946	hnrnpc	97	77.720	ENSSFOG00015012924	-	73	78.972	Scleropages_formosus
ENSAMXG00000042946	hnrnpc	98	75.393	ENSSMAG00000011147	-	89	64.460	Scophthalmus_maximus
ENSAMXG00000042946	hnrnpc	97	75.263	ENSSMAG00000013592	-	67	77.033	Scophthalmus_maximus
ENSAMXG00000042946	hnrnpc	99	77.436	ENSSDUG00000006730	-	66	79.904	Seriola_dumerili
ENSAMXG00000042946	hnrnpc	97	80.628	ENSSDUG00000001723	-	68	77.990	Seriola_dumerili
ENSAMXG00000042946	hnrnpc	99	77.436	ENSSLDG00000007474	-	72	79.904	Seriola_lalandi_dorsalis
ENSAMXG00000042946	hnrnpc	97	81.152	ENSSLDG00000007454	-	68	78.469	Seriola_lalandi_dorsalis
ENSAMXG00000042946	hnrnpc	97	76.316	ENSSPAG00000023204	-	68	77.512	Stegastes_partitus
ENSAMXG00000042946	hnrnpc	99	74.742	ENSSPAG00000013996	-	66	78.095	Stegastes_partitus
ENSAMXG00000042946	hnrnpc	94	48.241	ENSTGUG00000011689	RALYL	70	48.058	Taeniopygia_guttata
ENSAMXG00000042946	hnrnpc	98	72.775	ENSTRUG00000020158	-	68	74.519	Takifugu_rubripes
ENSAMXG00000042946	hnrnpc	97	69.634	ENSTNIG00000000334	-	90	58.130	Tetraodon_nigroviridis
ENSAMXG00000042946	hnrnpc	94	67.742	ENSTNIG00000007427	-	69	70.093	Tetraodon_nigroviridis
ENSAMXG00000042946	hnrnpc	95	43.500	ENSTBEG00000005551	RALYL	79	41.935	Tupaia_belangeri
ENSAMXG00000042946	hnrnpc	94	47.396	ENSTTRG00000015762	RALYL	66	48.187	Tursiops_truncatus
ENSAMXG00000042946	hnrnpc	94	47.340	ENSVPAG00000008501	RALYL	65	47.980	Vicugna_pacos
ENSAMXG00000042946	hnrnpc	96	61.538	ENSXCOG00000019434	-	58	79.562	Xiphophorus_couchianus
ENSAMXG00000042946	hnrnpc	95	65.079	ENSXCOG00000006552	-	67	66.667	Xiphophorus_couchianus
ENSAMXG00000042946	hnrnpc	97	72.251	ENSXMAG00000009333	-	66	74.510	Xiphophorus_maculatus
ENSAMXG00000042946	hnrnpc	99	72.165	ENSXMAG00000022849	-	68	75.714	Xiphophorus_maculatus