EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000043271 (Gene tree)
Gene ID: 103035915
Gene Symbol: rtca
Alias: cb158|rtcd1|sb:cb158|wu:fc62c03
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 8442 bases
Position: chr5:13694625-13703066
Accession: 103035915
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000041820	RTC	PF01137.21	4.9e-87	1	1
ENSAMXP00000041820	RTC_insert	PF05189.13	1.2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000038555	-	4733	XM_007240102	ENSAMXP00000041820	364 (aa)	XP_007240164	W5LFA5

Gene Model

Click here to download ENSAMXG00000043271's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000043271's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000043271	rtca	100	73.224	ENSG00000137996	RTCA	100	73.224	Homo_sapiens
ENSAMXG00000043271	rtca	100	79.945	ENSAPOG00000001345	rtca	99	79.945	Acanthochromis_polyacanthus
ENSAMXG00000043271	rtca	73	73.606	ENSAMEG00000008855	RTCA	100	73.606	Ailuropoda_melanoleuca
ENSAMXG00000043271	rtca	98	81.564	ENSACIG00000019643	rtca	98	81.564	Amphilophus_citrinellus
ENSAMXG00000043271	rtca	100	79.396	ENSAOCG00000014979	rtca	99	79.396	Amphiprion_ocellaris
ENSAMXG00000043271	rtca	100	79.121	ENSAPEG00000006945	rtca	99	79.121	Amphiprion_percula
ENSAMXG00000043271	rtca	96	79.943	ENSATEG00000006315	rtca	96	79.943	Anabas_testudineus
ENSAMXG00000043271	rtca	96	69.688	ENSAPLG00000015430	RTCA	100	69.688	Anas_platyrhynchos
ENSAMXG00000043271	rtca	100	72.951	ENSANAG00000025446	RTCA	100	72.951	Aotus_nancymaae
ENSAMXG00000043271	rtca	100	81.044	ENSACLG00000020770	rtca	99	81.044	Astatotilapia_calliptera
ENSAMXG00000043271	rtca	100	73.770	ENSBTAG00000006321	RTCA	100	73.770	Bos_taurus
ENSAMXG00000043271	rtca	100	72.678	ENSCJAG00000003398	RTCA	100	72.678	Callithrix_jacchus
ENSAMXG00000043271	rtca	100	72.951	ENSCAFG00000020010	RTCA	68	72.951	Canis_familiaris
ENSAMXG00000043271	rtca	100	72.951	ENSCAFG00020011528	RTCA	57	72.951	Canis_lupus_dingo
ENSAMXG00000043271	rtca	100	73.497	ENSCHIG00000018937	RTCA	100	73.497	Capra_hircus
ENSAMXG00000043271	rtca	100	71.858	ENSTSYG00000011305	RTCA	100	71.858	Carlito_syrichta
ENSAMXG00000043271	rtca	100	73.224	ENSCCAG00000021844	RTCA	100	73.224	Cebus_capucinus
ENSAMXG00000043271	rtca	100	70.185	ENSCATG00000019364	RTCA	100	72.168	Cercocebus_atys
ENSAMXG00000043271	rtca	87	73.734	ENSCLAG00000006125	RTCA	100	73.734	Chinchilla_lanigera
ENSAMXG00000043271	rtca	100	72.951	ENSCSAG00000001509	RTCA	100	72.951	Chlorocebus_sabaeus
ENSAMXG00000043271	rtca	100	71.585	ENSCHOG00000005211	RTCA	100	71.585	Choloepus_hoffmanni
ENSAMXG00000043271	rtca	98	69.916	ENSCPBG00000026658	RTCA	98	69.916	Chrysemys_picta_bellii
ENSAMXG00000043271	rtca	99	54.945	ENSCING00000007875	-	99	54.945	Ciona_intestinalis
ENSAMXG00000043271	rtca	99	53.846	ENSCSAVG00000007269	-	99	53.846	Ciona_savignyi
ENSAMXG00000043271	rtca	100	72.678	ENSCANG00000040106	RTCA	100	72.678	Colobus_angolensis_palliatus
ENSAMXG00000043271	rtca	73	71.747	ENSCGRG00001013163	Rtca	85	71.747	Cricetulus_griseus_chok1gshd
ENSAMXG00000043271	rtca	99	75.758	ENSCSEG00000000530	rtca	98	75.758	Cynoglossus_semilaevis
ENSAMXG00000043271	rtca	100	64.754	ENSCVAG00000021809	rtca	100	64.754	Cyprinodon_variegatus
ENSAMXG00000043271	rtca	100	91.758	ENSDARG00000002215	rtca	100	91.758	Danio_rerio
ENSAMXG00000043271	rtca	100	72.131	ENSDNOG00000000456	RTCA	100	72.131	Dasypus_novemcinctus
ENSAMXG00000043271	rtca	100	71.585	ENSDORG00000005448	Rtca	100	71.585	Dipodomys_ordii
ENSAMXG00000043271	rtca	98	40.449	FBgn0025630	Rtca	97	40.449	Drosophila_melanogaster
ENSAMXG00000043271	rtca	95	53.736	ENSEBUG00000008556	rtca	96	53.736	Eptatretus_burgeri
ENSAMXG00000043271	rtca	100	72.951	ENSEASG00005015926	RTCA	100	72.951	Equus_asinus_asinus
ENSAMXG00000043271	rtca	88	30.303	ENSECAG00000015973	RCL1	91	30.303	Equus_caballus
ENSAMXG00000043271	rtca	100	72.951	ENSECAG00000019831	RTCA	100	72.951	Equus_caballus
ENSAMXG00000043271	rtca	91	65.896	ENSEEUG00000001165	RTCA	100	65.896	Erinaceus_europaeus
ENSAMXG00000043271	rtca	100	81.868	ENSELUG00000003741	rtca	100	81.868	Esox_lucius
ENSAMXG00000043271	rtca	100	73.224	ENSFCAG00000024460	RTCA	100	73.224	Felis_catus
ENSAMXG00000043271	rtca	91	70.659	ENSFALG00000002443	RTCA	90	70.659	Ficedula_albicollis
ENSAMXG00000043271	rtca	100	71.858	ENSFDAG00000012070	-	100	71.858	Fukomys_damarensis
ENSAMXG00000043271	rtca	98	57.182	ENSFDAG00000016084	-	100	57.182	Fukomys_damarensis
ENSAMXG00000043271	rtca	55	85.500	ENSFHEG00000002868	rtca	93	79.817	Fundulus_heteroclitus
ENSAMXG00000043271	rtca	100	79.945	ENSGMOG00000013264	rtca	100	79.945	Gadus_morhua
ENSAMXG00000043271	rtca	98	69.638	ENSGALG00000005277	RTCA	98	69.638	Gallus_gallus
ENSAMXG00000043271	rtca	100	78.297	ENSGAFG00000011853	rtca	99	78.297	Gambusia_affinis
ENSAMXG00000043271	rtca	100	78.297	ENSGACG00000013497	rtca	100	78.297	Gasterosteus_aculeatus
ENSAMXG00000043271	rtca	79	70.035	ENSGAGG00000023306	RTCA	98	70.035	Gopherus_agassizii
ENSAMXG00000043271	rtca	100	72.131	ENSGGOG00000044018	-	100	72.131	Gorilla_gorilla
ENSAMXG00000043271	rtca	100	72.678	ENSGGOG00000009546	-	100	72.678	Gorilla_gorilla
ENSAMXG00000043271	rtca	100	81.044	ENSHBUG00000002114	rtca	99	81.044	Haplochromis_burtoni
ENSAMXG00000043271	rtca	100	72.404	ENSHGLG00000002617	RTCA	100	72.404	Heterocephalus_glaber_female
ENSAMXG00000043271	rtca	100	72.404	ENSHGLG00100006056	RTCA	100	72.404	Heterocephalus_glaber_male
ENSAMXG00000043271	rtca	100	68.956	ENSHCOG00000020628	rtca	89	68.956	Hippocampus_comes
ENSAMXG00000043271	rtca	100	95.055	ENSIPUG00000024803	rtca	100	95.055	Ictalurus_punctatus
ENSAMXG00000043271	rtca	100	63.934	ENSSTOG00000033099	-	100	63.934	Ictidomys_tridecemlineatus
ENSAMXG00000043271	rtca	100	67.213	ENSSTOG00000013528	-	100	67.213	Ictidomys_tridecemlineatus
ENSAMXG00000043271	rtca	100	52.877	ENSJJAG00000016178	Rtca	100	52.877	Jaculus_jaculus
ENSAMXG00000043271	rtca	100	79.121	ENSKMAG00000006651	rtca	99	79.121	Kryptolebias_marmoratus
ENSAMXG00000043271	rtca	88	78.997	ENSLBEG00000002448	-	99	78.997	Labrus_bergylta
ENSAMXG00000043271	rtca	98	79.888	ENSLBEG00000028971	rtca	99	79.888	Labrus_bergylta
ENSAMXG00000043271	rtca	100	67.945	ENSLACG00000013666	RTCA	100	67.945	Latimeria_chalumnae
ENSAMXG00000043271	rtca	100	79.178	ENSLOCG00000000093	rtca	99	79.178	Lepisosteus_oculatus
ENSAMXG00000043271	rtca	100	71.038	ENSLAFG00000001473	RTCA	100	71.038	Loxodonta_africana
ENSAMXG00000043271	rtca	100	72.951	ENSMFAG00000034132	RTCA	100	72.951	Macaca_fascicularis
ENSAMXG00000043271	rtca	100	72.951	ENSMMUG00000019105	RTCA	100	72.951	Macaca_mulatta
ENSAMXG00000043271	rtca	85	30.000	ENSMNEG00000012288	RCL1	94	30.000	Macaca_nemestrina
ENSAMXG00000043271	rtca	84	72.492	ENSMNEG00000037163	RTCA	100	72.492	Macaca_nemestrina
ENSAMXG00000043271	rtca	100	60.109	ENSMLEG00000042151	RTCA	100	60.109	Mandrillus_leucophaeus
ENSAMXG00000043271	rtca	100	81.319	ENSMAMG00000016536	rtca	100	81.319	Mastacembelus_armatus
ENSAMXG00000043271	rtca	100	81.044	ENSMZEG00005017945	rtca	99	81.044	Maylandia_zebra
ENSAMXG00000043271	rtca	87	70.126	ENSMGAG00000006892	RTCA	99	70.126	Meleagris_gallopavo
ENSAMXG00000043271	rtca	98	72.222	ENSMAUG00000008488	Rtca	98	72.222	Mesocricetus_auratus
ENSAMXG00000043271	rtca	84	73.786	ENSMICG00000008643	RTCA	100	73.786	Microcebus_murinus
ENSAMXG00000043271	rtca	98	72.222	ENSMOCG00000016660	Rtca	98	72.222	Microtus_ochrogaster
ENSAMXG00000043271	rtca	84	79.805	ENSMMOG00000007750	rtca	100	79.805	Mola_mola
ENSAMXG00000043271	rtca	100	71.858	ENSMODG00000003557	RTCA	100	71.858	Monodelphis_domestica
ENSAMXG00000043271	rtca	100	80.769	ENSMALG00000020844	rtca	100	80.769	Monopterus_albus
ENSAMXG00000043271	rtca	98	71.389	MGP_CAROLIEiJ_G0025565	Rtca	100	72.535	Mus_caroli
ENSAMXG00000043271	rtca	98	70.833	ENSMUSG00000000339	Rtca	100	72.535	Mus_musculus
ENSAMXG00000043271	rtca	98	71.389	MGP_PahariEiJ_G0027011	Rtca	100	72.535	Mus_pahari
ENSAMXG00000043271	rtca	98	71.111	MGP_SPRETEiJ_G0026515	Rtca	100	71.831	Mus_spretus
ENSAMXG00000043271	rtca	100	73.224	ENSMPUG00000012119	RTCA	100	73.224	Mustela_putorius_furo
ENSAMXG00000043271	rtca	100	70.027	ENSMLUG00000009922	RTCA	100	70.027	Myotis_lucifugus
ENSAMXG00000043271	rtca	100	70.765	ENSNGAG00000011540	Rtca	99	70.765	Nannospalax_galili
ENSAMXG00000043271	rtca	100	81.044	ENSNBRG00000003062	rtca	99	81.044	Neolamprologus_brichardi
ENSAMXG00000043271	rtca	100	72.678	ENSNLEG00000031426	RTCA	100	72.678	Nomascus_leucogenys
ENSAMXG00000043271	rtca	73	68.773	ENSOPRG00000012092	RTCA	71	68.773	Ochotona_princeps
ENSAMXG00000043271	rtca	95	71.839	ENSODEG00000006990	RTCA	96	72.080	Octodon_degus
ENSAMXG00000043271	rtca	100	80.769	ENSONIG00000007753	rtca	99	80.769	Oreochromis_niloticus
ENSAMXG00000043271	rtca	87	72.240	ENSOANG00000012055	RTCA	98	72.240	Ornithorhynchus_anatinus
ENSAMXG00000043271	rtca	98	73.333	ENSOCUG00000014247	RTCA	98	73.333	Oryctolagus_cuniculus
ENSAMXG00000043271	rtca	100	79.670	ENSORLG00000013605	rtca	100	79.670	Oryzias_latipes
ENSAMXG00000043271	rtca	100	79.945	ENSORLG00020001904	rtca	100	79.945	Oryzias_latipes_hni
ENSAMXG00000043271	rtca	100	79.945	ENSORLG00015021064	rtca	100	79.945	Oryzias_latipes_hsok
ENSAMXG00000043271	rtca	100	78.571	ENSOMEG00000000756	rtca	100	78.571	Oryzias_melastigma
ENSAMXG00000043271	rtca	100	65.847	ENSOGAG00000005627	RTCA	100	65.847	Otolemur_garnettii
ENSAMXG00000043271	rtca	87	73.899	ENSOARG00000018122	RTCA	100	73.899	Ovis_aries
ENSAMXG00000043271	rtca	100	70.185	ENSPPAG00000035119	RTCA	100	72.168	Pan_paniscus
ENSAMXG00000043271	rtca	100	73.497	ENSPPRG00000000350	RTCA	100	73.497	Panthera_pardus
ENSAMXG00000043271	rtca	100	72.951	ENSPTIG00000012816	RTCA	100	72.951	Panthera_tigris_altaica
ENSAMXG00000043271	rtca	100	70.185	ENSPTRG00000001004	RTCA	100	72.168	Pan_troglodytes
ENSAMXG00000043271	rtca	100	72.678	ENSPANG00000000346	RTCA	100	72.678	Papio_anubis
ENSAMXG00000043271	rtca	100	86.813	ENSPKIG00000001653	rtca	100	86.813	Paramormyrops_kingsleyae
ENSAMXG00000043271	rtca	98	70.195	ENSPSIG00000011408	RTCA	98	70.195	Pelodiscus_sinensis
ENSAMXG00000043271	rtca	98	71.944	ENSPEMG00000018582	Rtca	98	71.944	Peromyscus_maniculatus_bairdii
ENSAMXG00000043271	rtca	98	56.389	ENSPMAG00000009110	rtca	98	56.389	Petromyzon_marinus
ENSAMXG00000043271	rtca	100	72.404	ENSPCIG00000007684	RTCA	100	72.404	Phascolarctos_cinereus
ENSAMXG00000043271	rtca	100	78.356	ENSPFOG00000004824	rtca	100	78.356	Poecilia_formosa
ENSAMXG00000043271	rtca	100	78.846	ENSPLAG00000011753	rtca	99	78.846	Poecilia_latipinna
ENSAMXG00000043271	rtca	100	78.846	ENSPMEG00000020469	rtca	99	78.846	Poecilia_mexicana
ENSAMXG00000043271	rtca	100	77.473	ENSPREG00000001365	rtca	99	77.473	Poecilia_reticulata
ENSAMXG00000043271	rtca	100	72.678	ENSPPYG00000001115	RTCA	100	72.678	Pongo_abelii
ENSAMXG00000043271	rtca	100	69.672	ENSPCAG00000005076	RTCA	100	69.672	Procavia_capensis
ENSAMXG00000043271	rtca	100	73.770	ENSPCOG00000005603	RTCA	100	73.770	Propithecus_coquereli
ENSAMXG00000043271	rtca	100	68.602	ENSPVAG00000009478	RTCA	100	68.602	Pteropus_vampyrus
ENSAMXG00000043271	rtca	100	81.044	ENSPNYG00000004722	rtca	99	81.044	Pundamilia_nyererei
ENSAMXG00000043271	rtca	100	92.582	ENSPNAG00000022270	rtca	100	92.582	Pygocentrus_nattereri
ENSAMXG00000043271	rtca	98	71.111	ENSRNOG00000014575	Rtca	98	71.111	Rattus_norvegicus
ENSAMXG00000043271	rtca	100	69.921	ENSRBIG00000041180	RTCA	100	71.845	Rhinopithecus_bieti
ENSAMXG00000043271	rtca	100	72.404	ENSRROG00000024929	RTCA	100	72.404	Rhinopithecus_roxellana
ENSAMXG00000043271	rtca	100	72.131	ENSSBOG00000028626	RTCA	100	72.131	Saimiri_boliviensis_boliviensis
ENSAMXG00000043271	rtca	100	72.951	ENSSHAG00000001758	RTCA	100	72.951	Sarcophilus_harrisii
ENSAMXG00000043271	rtca	99	79.109	ENSSMAG00000014680	rtca	97	79.109	Scophthalmus_maximus
ENSAMXG00000043271	rtca	98	81.285	ENSSDUG00000015585	rtca	98	80.663	Seriola_dumerili
ENSAMXG00000043271	rtca	96	81.662	ENSSLDG00000018985	rtca	95	81.662	Seriola_lalandi_dorsalis
ENSAMXG00000043271	rtca	87	67.823	ENSSARG00000013993	RTCA	100	67.823	Sorex_araneus
ENSAMXG00000043271	rtca	100	78.846	ENSSPAG00000011938	rtca	99	78.846	Stegastes_partitus
ENSAMXG00000043271	rtca	100	72.678	ENSSSCG00000006865	RTCA	100	72.678	Sus_scrofa
ENSAMXG00000043271	rtca	98	71.031	ENSTGUG00000005154	RTCA	98	71.031	Taeniopygia_guttata
ENSAMXG00000043271	rtca	100	78.846	ENSTRUG00000008799	rtca	100	78.846	Takifugu_rubripes
ENSAMXG00000043271	rtca	100	78.022	ENSTNIG00000004725	rtca	100	78.022	Tetraodon_nigroviridis
ENSAMXG00000043271	rtca	57	61.538	ENSTBEG00000000943	RTCA	59	61.538	Tupaia_belangeri
ENSAMXG00000043271	rtca	100	70.712	ENSTTRG00000015327	RTCA	100	70.712	Tursiops_truncatus
ENSAMXG00000043271	rtca	95	71.264	ENSUAMG00000017265	RTCA	98	71.264	Ursus_americanus
ENSAMXG00000043271	rtca	100	72.404	ENSUMAG00000007881	RTCA	100	72.404	Ursus_maritimus
ENSAMXG00000043271	rtca	87	64.669	ENSVPAG00000001039	RTCA	84	64.669	Vicugna_pacos
ENSAMXG00000043271	rtca	100	72.951	ENSVVUG00000022041	RTCA	68	72.951	Vulpes_vulpes
ENSAMXG00000043271	rtca	99	59.066	ENSXETG00000031661	RTCA	99	59.066	Xenopus_tropicalis
ENSAMXG00000043271	rtca	100	67.033	ENSXCOG00000008002	rtca	100	67.033	Xiphophorus_couchianus
ENSAMXG00000043271	rtca	100	78.297	ENSXMAG00000005482	rtca	99	78.297	Xiphophorus_maculatus