EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000043770 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 90019 bases
Position: chrAPWO02002200.1:585609-675627
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000034973	RRM_1	PF00076.22	3.1e-31	1	2
ENSAMXP00000034973	RRM_1	PF00076.22	3.1e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000043375	-	1453	-	ENSAMXP00000034973	257 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000043770's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000043770's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000043770	-	83	38.776	ENSAMXG00000007935	celf4	56	36.250
ENSAMXG00000043770	-	100	84.496	ENSAMXG00000020388	rbms3	70	88.614
ENSAMXG00000043770	-	91	74.370	ENSAMXG00000024719	rbms2a	55	78.440
ENSAMXG00000043770	-	73	36.683	ENSAMXG00000036990	ELAVL2	58	36.970
ENSAMXG00000043770	-	81	73.953	ENSAMXG00000002146	rbms1a	59	74.752
ENSAMXG00000043770	-	75	39.474	ENSAMXG00000005933	celf2	58	42.623
ENSAMXG00000043770	-	81	79.245	ENSAMXG00000017399	rbms2b	54	77.130
ENSAMXG00000043770	-	70	34.615	ENSAMXG00000031223	elavl1a	86	35.526
ENSAMXG00000043770	-	79	37.097	ENSAMXG00000040498	elavl3	64	38.333
ENSAMXG00000043770	-	92	74.000	ENSAMXG00000009969	RBMS1	60	78.829
ENSAMXG00000043770	-	70	35.000	ENSAMXG00000006391	elavl1b	86	35.294
ENSAMXG00000043770	-	82	38.710	ENSAMXG00000000687	elavl4	58	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000043770	-	100	82.576	ENSG00000144642	RBMS3	100	82.576	Homo_sapiens
ENSAMXG00000043770	-	100	87.597	ENSAPOG00000003432	-	62	87.597	Acanthochromis_polyacanthus
ENSAMXG00000043770	-	81	85.646	ENSAPOG00000007266	rbms3	65	80.524	Acanthochromis_polyacanthus
ENSAMXG00000043770	-	87	88.444	ENSACIG00000006987	-	63	88.745	Amphilophus_citrinellus
ENSAMXG00000043770	-	87	73.799	ENSACIG00000021113	RBMS3	88	73.246	Amphilophus_citrinellus
ENSAMXG00000043770	-	95	87.705	ENSAOCG00000024104	-	57	87.705	Amphiprion_ocellaris
ENSAMXG00000043770	-	100	80.224	ENSAOCG00000021274	rbms3	63	80.224	Amphiprion_ocellaris
ENSAMXG00000043770	-	87	80.342	ENSAPEG00000016299	rbms3	55	86.058	Amphiprion_percula
ENSAMXG00000043770	-	95	87.705	ENSAPEG00000009481	-	61	88.066	Amphiprion_percula
ENSAMXG00000043770	-	100	80.827	ENSATEG00000024295	rbms3	63	80.827	Anabas_testudineus
ENSAMXG00000043770	-	100	87.597	ENSATEG00000008433	-	62	87.597	Anabas_testudineus
ENSAMXG00000043770	-	100	82.129	ENSAPLG00000012270	RBMS3	61	79.468	Anas_platyrhynchos
ENSAMXG00000043770	-	100	82.890	ENSACAG00000028664	RBMS3	63	82.890	Anolis_carolinensis
ENSAMXG00000043770	-	100	82.576	ENSANAG00000021899	RBMS3	63	82.576	Aotus_nancymaae
ENSAMXG00000043770	-	95	87.705	ENSACLG00000008976	-	53	87.705	Astatotilapia_calliptera
ENSAMXG00000043770	-	100	81.132	ENSACLG00000018506	rbms3	63	81.132	Astatotilapia_calliptera
ENSAMXG00000043770	-	100	82.197	ENSBTAG00000044062	RBMS3	63	82.197	Bos_taurus
ENSAMXG00000043770	-	100	82.576	ENSCJAG00000004312	RBMS3	63	82.576	Callithrix_jacchus
ENSAMXG00000043770	-	100	82.576	ENSCAFG00000005464	RBMS3	60	82.576	Canis_familiaris
ENSAMXG00000043770	-	100	82.576	ENSCAFG00020024980	RBMS3	89	81.955	Canis_lupus_dingo
ENSAMXG00000043770	-	100	82.197	ENSCHIG00000009144	RBMS3	63	82.197	Capra_hircus
ENSAMXG00000043770	-	62	85.093	ENSTSYG00000002615	RBMS3	51	85.093	Carlito_syrichta
ENSAMXG00000043770	-	79	86.207	ENSCAPG00000017783	RBMS3	58	86.636	Cavia_aperea
ENSAMXG00000043770	-	100	84.170	ENSCPOG00000006457	RBMS3	62	84.170	Cavia_porcellus
ENSAMXG00000043770	-	100	82.576	ENSCCAG00000008671	RBMS3	63	82.576	Cebus_capucinus
ENSAMXG00000043770	-	100	82.576	ENSCATG00000013222	RBMS3	63	82.576	Cercocebus_atys
ENSAMXG00000043770	-	100	82.576	ENSCLAG00000005866	RBMS3	63	82.576	Chinchilla_lanigera
ENSAMXG00000043770	-	100	82.510	ENSCPBG00000022678	RBMS3	69	83.333	Chrysemys_picta_bellii
ENSAMXG00000043770	-	100	82.576	ENSCANG00000032137	RBMS3	63	82.576	Colobus_angolensis_palliatus
ENSAMXG00000043770	-	100	83.012	ENSCGRG00001007243	Rbms3	64	83.012	Cricetulus_griseus_chok1gshd
ENSAMXG00000043770	-	100	83.012	ENSCGRG00000004599	Rbms3	64	83.012	Cricetulus_griseus_crigri
ENSAMXG00000043770	-	100	87.209	ENSCSEG00000014677	-	94	88.066	Cynoglossus_semilaevis
ENSAMXG00000043770	-	100	80.150	ENSCSEG00000010011	RBMS3	59	86.058	Cynoglossus_semilaevis
ENSAMXG00000043770	-	100	86.434	ENSCVAG00000022814	-	78	89.844	Cyprinodon_variegatus
ENSAMXG00000043770	-	100	81.298	ENSCVAG00000022354	rbms3	62	81.679	Cyprinodon_variegatus
ENSAMXG00000043770	-	100	84.109	ENSDARG00000044574	rbms3	95	89.781	Danio_rerio
ENSAMXG00000043770	-	100	82.576	ENSDNOG00000016645	RBMS3	66	82.576	Dasypus_novemcinctus
ENSAMXG00000043770	-	100	82.576	ENSDORG00000007220	Rbms3	63	82.576	Dipodomys_ordii
ENSAMXG00000043770	-	61	72.436	ENSEBUG00000005830	rbms3	52	76.596	Eptatretus_burgeri
ENSAMXG00000043770	-	100	82.576	ENSEASG00005006152	RBMS3	69	82.576	Equus_asinus_asinus
ENSAMXG00000043770	-	100	82.576	ENSECAG00000017871	RBMS3	69	82.576	Equus_caballus
ENSAMXG00000043770	-	100	73.485	ENSEEUG00000014337	RBMS3	67	73.485	Erinaceus_europaeus
ENSAMXG00000043770	-	100	87.209	ENSELUG00000006905	-	98	87.654	Esox_lucius
ENSAMXG00000043770	-	100	78.947	ENSELUG00000002862	rbms3	63	78.947	Esox_lucius
ENSAMXG00000043770	-	100	82.576	ENSFCAG00000002130	RBMS3	63	82.576	Felis_catus
ENSAMXG00000043770	-	100	82.129	ENSFALG00000009165	RBMS3	63	82.955	Ficedula_albicollis
ENSAMXG00000043770	-	100	82.576	ENSFDAG00000008278	RBMS3	63	82.576	Fukomys_damarensis
ENSAMXG00000043770	-	98	66.795	ENSFHEG00000004787	RBMS3	55	75.481	Fundulus_heteroclitus
ENSAMXG00000043770	-	69	89.062	ENSFHEG00000016746	-	93	89.844	Fundulus_heteroclitus
ENSAMXG00000043770	-	84	88.532	ENSGMOG00000002600	-	57	87.660	Gadus_morhua
ENSAMXG00000043770	-	100	82.129	ENSGALG00000011439	RBMS3	63	82.955	Gallus_gallus
ENSAMXG00000043770	-	100	87.209	ENSGAFG00000003329	-	62	87.209	Gambusia_affinis
ENSAMXG00000043770	-	100	81.749	ENSGAFG00000000168	rbms3	69	81.749	Gambusia_affinis
ENSAMXG00000043770	-	100	82.576	ENSGGOG00000007228	RBMS3	63	82.576	Gorilla_gorilla
ENSAMXG00000043770	-	100	81.132	ENSHBUG00000021196	rbms3	93	81.132	Haplochromis_burtoni
ENSAMXG00000043770	-	100	87.597	ENSHBUG00000019785	-	57	87.597	Haplochromis_burtoni
ENSAMXG00000043770	-	100	82.576	ENSHGLG00000002170	RBMS3	63	82.576	Heterocephalus_glaber_female
ENSAMXG00000043770	-	100	82.576	ENSHGLG00100014278	RBMS3	63	82.576	Heterocephalus_glaber_male
ENSAMXG00000043770	-	100	85.271	ENSHCOG00000007894	-	63	86.580	Hippocampus_comes
ENSAMXG00000043770	-	100	83.721	ENSIPUG00000017680	rbms3	62	83.721	Ictalurus_punctatus
ENSAMXG00000043770	-	100	82.955	ENSSTOG00000006324	RBMS3	63	82.955	Ictidomys_tridecemlineatus
ENSAMXG00000043770	-	100	79.924	ENSJJAG00000014708	Rbms3	63	78.030	Jaculus_jaculus
ENSAMXG00000043770	-	100	79.182	ENSKMAG00000020500	rbms3	63	79.182	Kryptolebias_marmoratus
ENSAMXG00000043770	-	100	87.209	ENSKMAG00000012586	-	62	87.209	Kryptolebias_marmoratus
ENSAMXG00000043770	-	100	86.822	ENSLBEG00000027388	-	62	86.822	Labrus_bergylta
ENSAMXG00000043770	-	100	83.206	ENSLACG00000010581	RBMS3	63	84.030	Latimeria_chalumnae
ENSAMXG00000043770	-	100	82.576	ENSLAFG00000000354	RBMS3	61	82.576	Loxodonta_africana
ENSAMXG00000043770	-	100	82.576	ENSMFAG00000033300	RBMS3	63	82.576	Macaca_fascicularis
ENSAMXG00000043770	-	100	82.576	ENSMMUG00000004404	RBMS3	63	82.576	Macaca_mulatta
ENSAMXG00000043770	-	100	82.576	ENSMNEG00000035839	RBMS3	63	82.576	Macaca_nemestrina
ENSAMXG00000043770	-	100	82.576	ENSMLEG00000029464	RBMS3	63	82.576	Mandrillus_leucophaeus
ENSAMXG00000043770	-	100	86.822	ENSMAMG00000002176	-	58	86.822	Mastacembelus_armatus
ENSAMXG00000043770	-	100	80.524	ENSMAMG00000024043	rbms3	65	81.648	Mastacembelus_armatus
ENSAMXG00000043770	-	100	81.132	ENSMZEG00005006308	rbms3	63	81.132	Maylandia_zebra
ENSAMXG00000043770	-	100	87.597	ENSMZEG00005026469	-	58	87.597	Maylandia_zebra
ENSAMXG00000043770	-	100	83.012	ENSMAUG00000016436	Rbms3	64	83.012	Mesocricetus_auratus
ENSAMXG00000043770	-	100	82.576	ENSMICG00000049249	RBMS3	63	82.576	Microcebus_murinus
ENSAMXG00000043770	-	100	81.467	ENSMOCG00000006997	Rbms3	64	83.012	Microtus_ochrogaster
ENSAMXG00000043770	-	100	87.597	ENSMMOG00000015071	-	63	87.597	Mola_mola
ENSAMXG00000043770	-	87	80.603	ENSMMOG00000008471	RBMS3	57	85.577	Mola_mola
ENSAMXG00000043770	-	100	77.778	ENSMODG00000015125	RBMS3	60	77.037	Monodelphis_domestica
ENSAMXG00000043770	-	100	87.597	ENSMALG00000009155	-	62	87.597	Monopterus_albus
ENSAMXG00000043770	-	81	85.646	ENSMALG00000019536	RBMS3	63	79.775	Monopterus_albus
ENSAMXG00000043770	-	100	81.467	MGP_CAROLIEiJ_G0032783	Rbms3	98	87.192	Mus_caroli
ENSAMXG00000043770	-	100	82.625	ENSMUSG00000039607	Rbms3	98	87.129	Mus_musculus
ENSAMXG00000043770	-	100	82.625	MGP_PahariEiJ_G0015650	Rbms3	98	87.129	Mus_pahari
ENSAMXG00000043770	-	100	82.625	MGP_SPRETEiJ_G0033930	Rbms3	98	87.129	Mus_spretus
ENSAMXG00000043770	-	100	82.576	ENSMPUG00000011956	RBMS3	61	82.576	Mustela_putorius_furo
ENSAMXG00000043770	-	100	82.576	ENSMLUG00000000659	RBMS3	63	82.576	Myotis_lucifugus
ENSAMXG00000043770	-	100	83.398	ENSNGAG00000014039	Rbms3	62	83.398	Nannospalax_galili
ENSAMXG00000043770	-	100	87.597	ENSNBRG00000018065	-	62	87.597	Neolamprologus_brichardi
ENSAMXG00000043770	-	100	82.576	ENSNLEG00000004129	RBMS3	63	82.576	Nomascus_leucogenys
ENSAMXG00000043770	-	100	72.075	ENSMEUG00000004772	RBMS3	61	72.075	Notamacropus_eugenii
ENSAMXG00000043770	-	100	82.576	ENSOPRG00000006808	RBMS3	52	82.576	Ochotona_princeps
ENSAMXG00000043770	-	100	82.197	ENSODEG00000003651	RBMS3	63	82.197	Octodon_degus
ENSAMXG00000043770	-	100	81.749	ENSONIG00000007172	rbms3	66	81.749	Oreochromis_niloticus
ENSAMXG00000043770	-	100	82.576	ENSOANG00000010529	RBMS3	60	82.576	Ornithorhynchus_anatinus
ENSAMXG00000043770	-	100	81.818	ENSOCUG00000004840	RBMS3	60	81.818	Oryctolagus_cuniculus
ENSAMXG00000043770	-	100	87.597	ENSORLG00000002306	-	63	88.479	Oryzias_latipes
ENSAMXG00000043770	-	100	80.228	ENSORLG00000005370	RBMS3	62	80.228	Oryzias_latipes
ENSAMXG00000043770	-	100	87.597	ENSORLG00020008496	-	62	87.597	Oryzias_latipes_hni
ENSAMXG00000043770	-	100	79.848	ENSORLG00020022674	RBMS3	84	84.058	Oryzias_latipes_hni
ENSAMXG00000043770	-	100	80.228	ENSORLG00015005509	rbms3	84	84.058	Oryzias_latipes_hsok
ENSAMXG00000043770	-	100	87.597	ENSORLG00015015719	-	62	87.597	Oryzias_latipes_hsok
ENSAMXG00000043770	-	100	80.228	ENSOMEG00000014805	RBMS3	62	80.228	Oryzias_melastigma
ENSAMXG00000043770	-	87	88.889	ENSOMEG00000007677	-	63	88.940	Oryzias_melastigma
ENSAMXG00000043770	-	100	82.197	ENSOARG00000014684	RBMS3	60	82.197	Ovis_aries
ENSAMXG00000043770	-	100	82.576	ENSPPAG00000036519	RBMS3	63	82.576	Pan_paniscus
ENSAMXG00000043770	-	100	82.197	ENSPPRG00000002761	RBMS3	63	82.197	Panthera_pardus
ENSAMXG00000043770	-	100	82.197	ENSPTIG00000011568	RBMS3	63	82.197	Panthera_tigris_altaica
ENSAMXG00000043770	-	100	82.576	ENSPTRG00000014709	RBMS3	63	82.576	Pan_troglodytes
ENSAMXG00000043770	-	100	82.576	ENSPANG00000010234	RBMS3	64	78.700	Papio_anubis
ENSAMXG00000043770	-	100	84.496	ENSPKIG00000007989	-	100	84.496	Paramormyrops_kingsleyae
ENSAMXG00000043770	-	81	87.500	ENSPKIG00000016025	-	71	88.614	Paramormyrops_kingsleyae
ENSAMXG00000043770	-	100	82.129	ENSPSIG00000005269	RBMS3	63	82.955	Pelodiscus_sinensis
ENSAMXG00000043770	-	87	80.870	ENSPMGG00000021544	rbms3	54	85.096	Periophthalmus_magnuspinnatus
ENSAMXG00000043770	-	87	88.444	ENSPMGG00000021683	-	74	93.714	Periophthalmus_magnuspinnatus
ENSAMXG00000043770	-	94	84.362	ENSPEMG00000001117	Rbms3	61	84.362	Peromyscus_maniculatus_bairdii
ENSAMXG00000043770	-	100	81.887	ENSPCIG00000006106	RBMS3	86	86.058	Phascolarctos_cinereus
ENSAMXG00000043770	-	100	81.749	ENSPFOG00000017887	rbms3	62	81.749	Poecilia_formosa
ENSAMXG00000043770	-	69	89.062	ENSPLAG00000005161	-	77	89.844	Poecilia_latipinna
ENSAMXG00000043770	-	100	87.984	ENSPMEG00000002993	-	62	87.984	Poecilia_mexicana
ENSAMXG00000043770	-	63	82.822	ENSPMEG00000012831	-	72	82.822	Poecilia_mexicana
ENSAMXG00000043770	-	100	78.244	ENSPREG00000011880	rbms3	59	86.058	Poecilia_reticulata
ENSAMXG00000043770	-	98	85.714	ENSPREG00000018221	-	97	85.714	Poecilia_reticulata
ENSAMXG00000043770	-	100	68.182	ENSPCAG00000006307	RBMS3	60	68.182	Procavia_capensis
ENSAMXG00000043770	-	100	82.576	ENSPCOG00000017136	RBMS3	63	82.576	Propithecus_coquereli
ENSAMXG00000043770	-	100	87.597	ENSPNYG00000012624	-	62	87.597	Pundamilia_nyererei
ENSAMXG00000043770	-	100	81.132	ENSPNYG00000010546	rbms3	63	81.132	Pundamilia_nyererei
ENSAMXG00000043770	-	100	83.721	ENSPNAG00000001800	rbms3	62	83.721	Pygocentrus_nattereri
ENSAMXG00000043770	-	71	93.989	ENSPNAG00000026763	-	79	93.820	Pygocentrus_nattereri
ENSAMXG00000043770	-	100	83.012	ENSRNOG00000025881	Rbms3	65	83.012	Rattus_norvegicus
ENSAMXG00000043770	-	100	82.576	ENSRBIG00000035863	RBMS3	63	82.576	Rhinopithecus_bieti
ENSAMXG00000043770	-	81	87.081	ENSRROG00000027512	RBMS3	60	83.193	Rhinopithecus_roxellana
ENSAMXG00000043770	-	100	82.576	ENSSBOG00000020232	RBMS3	63	82.576	Saimiri_boliviensis_boliviensis
ENSAMXG00000043770	-	81	86.190	ENSSHAG00000002411	RBMS3	60	83.945	Sarcophilus_harrisii
ENSAMXG00000043770	-	100	87.209	ENSSFOG00015008578	rbms3	66	87.209	Scleropages_formosus
ENSAMXG00000043770	-	100	87.597	ENSSMAG00000020065	-	75	92.079	Scophthalmus_maximus
ENSAMXG00000043770	-	100	78.358	ENSSMAG00000004997	rbms3	69	78.358	Scophthalmus_maximus
ENSAMXG00000043770	-	100	87.597	ENSSDUG00000019287	-	62	87.597	Seriola_dumerili
ENSAMXG00000043770	-	100	80.150	ENSSDUG00000013656	RBMS3	58	85.577	Seriola_dumerili
ENSAMXG00000043770	-	100	87.597	ENSSLDG00000013224	-	62	87.597	Seriola_lalandi_dorsalis
ENSAMXG00000043770	-	100	79.630	ENSSLDG00000020276	RBMS3	63	79.630	Seriola_lalandi_dorsalis
ENSAMXG00000043770	-	81	86.667	ENSSARG00000000695	RBMS3	65	83.193	Sorex_araneus
ENSAMXG00000043770	-	100	80.224	ENSSPAG00000020693	rbms3	63	80.224	Stegastes_partitus
ENSAMXG00000043770	-	100	87.597	ENSSPAG00000003983	-	62	87.597	Stegastes_partitus
ENSAMXG00000043770	-	100	82.197	ENSSSCG00000036381	RBMS3	68	82.197	Sus_scrofa
ENSAMXG00000043770	-	100	80.899	ENSTRUG00000021719	RBMS3	63	80.899	Takifugu_rubripes
ENSAMXG00000043770	-	100	72.414	ENSTRUG00000007482	-	60	72.201	Takifugu_rubripes
ENSAMXG00000043770	-	81	87.081	ENSTBEG00000005362	RBMS3	65	83.193	Tupaia_belangeri
ENSAMXG00000043770	-	100	82.197	ENSTTRG00000006202	RBMS3	61	82.197	Tursiops_truncatus
ENSAMXG00000043770	-	100	82.576	ENSUMAG00000000263	RBMS3	66	82.576	Ursus_maritimus
ENSAMXG00000043770	-	81	87.081	ENSVVUG00000004660	RBMS3	94	84.404	Vulpes_vulpes
ENSAMXG00000043770	-	87	69.058	ENSXCOG00000019600	-	51	68.519	Xiphophorus_couchianus
ENSAMXG00000043770	-	100	87.597	ENSXMAG00000014382	-	62	87.597	Xiphophorus_maculatus
ENSAMXG00000043770	-	100	78.788	ENSXMAG00000021783	rbms3	58	86.058	Xiphophorus_maculatus