EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000043875 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 11070 bases
Position: chrAPWO02000584.1:394579-405648
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000053430	RVT_1	PF00078.27	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000052445	-	2049	-	ENSAMXP00000053430	682 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000043875's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000043875's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000043875	-	85	49.580	ENSAMXG00000038544	-	88	49.580
ENSAMXG00000043875	-	90	69.055	ENSAMXG00000042699	-	56	67.619
ENSAMXG00000043875	-	86	52.961	ENSAMXG00000040915	-	73	51.639
ENSAMXG00000043875	-	92	94.811	ENSAMXG00000033831	-	82	94.811
ENSAMXG00000043875	-	84	49.915	ENSAMXG00000041694	-	60	49.744
ENSAMXG00000043875	-	89	69.522	ENSAMXG00000029689	-	82	68.893
ENSAMXG00000043875	-	90	68.130	ENSAMXG00000036897	-	86	66.773
ENSAMXG00000043875	-	86	49.751	ENSAMXG00000030934	-	92	49.751

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000043875	-	53	34.536	ENSAPOG00000012172	-	68	34.536	Acanthochromis_polyacanthus
ENSAMXG00000043875	-	84	33.762	ENSACAG00000029367	-	84	33.441	Anolis_carolinensis
ENSAMXG00000043875	-	91	46.656	ENSIPUG00000009957	-	95	47.452	Ictalurus_punctatus
ENSAMXG00000043875	-	92	44.704	ENSIPUG00000000467	-	87	45.016	Ictalurus_punctatus
ENSAMXG00000043875	-	89	49.433	ENSIPUG00000023478	-	94	49.433	Ictalurus_punctatus
ENSAMXG00000043875	-	92	46.361	ENSIPUG00000020583	-	90	46.845	Ictalurus_punctatus
ENSAMXG00000043875	-	91	39.872	ENSKMAG00000021728	-	94	39.872	Kryptolebias_marmoratus
ENSAMXG00000043875	-	92	38.474	ENSORLG00000025074	-	91	38.474	Oryzias_latipes
ENSAMXG00000043875	-	77	32.605	ENSORLG00000004601	-	68	32.299	Oryzias_latipes
ENSAMXG00000043875	-	89	41.290	ENSORLG00000027546	-	87	41.290	Oryzias_latipes
ENSAMXG00000043875	-	87	38.538	ENSORLG00020019360	-	83	39.078	Oryzias_latipes_hni
ENSAMXG00000043875	-	87	38.538	ENSORLG00020018037	-	85	39.078	Oryzias_latipes_hni
ENSAMXG00000043875	-	87	38.704	ENSORLG00020008270	-	85	38.704	Oryzias_latipes_hni
ENSAMXG00000043875	-	87	43.740	ENSPKIG00000000452	-	91	43.573	Paramormyrops_kingsleyae
ENSAMXG00000043875	-	85	42.268	ENSPKIG00000021000	-	95	42.159	Paramormyrops_kingsleyae
ENSAMXG00000043875	-	90	52.488	ENSPNAG00000003267	-	90	52.488	Pygocentrus_nattereri
ENSAMXG00000043875	-	85	59.107	ENSPNAG00000014076	-	90	59.107	Pygocentrus_nattereri