EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000043877 (Gene tree)
Gene ID: 107197895
Gene Symbol: srek1
Alias: zgc:100974
Full Name: splicing regulatory glutamic acid and lysine rich protein 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 21412 bases
Position: chrAPWO02000139.1:1200736-1222147
Accession: 107197895
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000035571	RRM_1	PF00076.22	4.7e-21	1	2
ENSAMXP00000035571	RRM_1	PF00076.22	4.7e-21	2	2
ENSAMXP00000050300	RRM_1	PF00076.22	5.4e-21	1	2
ENSAMXP00000050300	RRM_1	PF00076.22	5.4e-21	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000046486	-	2116	-	ENSAMXP00000035571	496 (aa)	-	-
ENSAMXT00000051009	-	2972	XM_022667837	ENSAMXP00000050300	520 (aa)	XP_022523558	UPI000BBDF12A

Gene Model

Click here to download ENSAMXG00000043877's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000043877's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000043877	srek1	57	80.070	ENSG00000153914	SREK1	85	81.176	Homo_sapiens
ENSAMXG00000043877	srek1	58	45.139	ENSG00000116754	SRSF11	67	68.605	Homo_sapiens
ENSAMXG00000043877	srek1	50	79.352	ENSAPOG00000023618	srek1	95	57.002	Acanthochromis_polyacanthus
ENSAMXG00000043877	srek1	58	40.278	ENSAPOG00000004488	-	91	62.376	Acanthochromis_polyacanthus
ENSAMXG00000043877	srek1	57	80.420	ENSAMEG00000011327	SREK1	53	60.140	Ailuropoda_melanoleuca
ENSAMXG00000043877	srek1	81	60.000	ENSAOCG00000024379	srek1	95	56.511	Amphiprion_ocellaris
ENSAMXG00000043877	srek1	58	40.625	ENSAPEG00000003619	SRSF11	91	62.376	Amphiprion_percula
ENSAMXG00000043877	srek1	58	42.561	ENSATEG00000007534	-	91	62.376	Anabas_testudineus
ENSAMXG00000043877	srek1	81	63.235	ENSATEG00000009450	srek1	95	60.636	Anabas_testudineus
ENSAMXG00000043877	srek1	73	70.330	ENSAPLG00000003948	-	70	80.277	Anas_platyrhynchos
ENSAMXG00000043877	srek1	59	44.407	ENSACAG00000013654	SRSF11	93	39.729	Anolis_carolinensis
ENSAMXG00000043877	srek1	59	78.571	ENSANAG00000031358	SREK1	92	77.957	Aotus_nancymaae
ENSAMXG00000043877	srek1	58	83.448	ENSACLG00000026754	srek1	96	83.448	Astatotilapia_calliptera
ENSAMXG00000043877	srek1	57	80.769	ENSBTAG00000007321	SREK1	85	82.353	Bos_taurus
ENSAMXG00000043877	srek1	57	45.614	ENSCJAG00000017704	SRSF11	50	44.983	Callithrix_jacchus
ENSAMXG00000043877	srek1	72	70.588	ENSCJAG00000015950	SREK1	92	77.957	Callithrix_jacchus
ENSAMXG00000043877	srek1	57	80.420	ENSCAFG00000007560	SREK1	51	59.655	Canis_familiaris
ENSAMXG00000043877	srek1	57	44.912	ENSCHIG00000025295	SRSF11	75	66.292	Capra_hircus
ENSAMXG00000043877	srek1	58	42.361	ENSTSYG00000033270	-	65	66.304	Carlito_syrichta
ENSAMXG00000043877	srek1	57	80.420	ENSTSYG00000036957	SREK1	92	79.032	Carlito_syrichta
ENSAMXG00000043877	srek1	57	81.119	ENSCPOG00000008925	SREK1	52	80.000	Cavia_porcellus
ENSAMXG00000043877	srek1	57	80.070	ENSCCAG00000020591	SREK1	85	81.176	Cebus_capucinus
ENSAMXG00000043877	srek1	65	74.462	ENSCATG00000031482	SREK1	92	77.957	Cercocebus_atys
ENSAMXG00000043877	srek1	57	81.469	ENSCLAG00000005024	SREK1	60	72.207	Chinchilla_lanigera
ENSAMXG00000043877	srek1	57	80.702	ENSCPBG00000026866	SREK1	84	80.702	Chrysemys_picta_bellii
ENSAMXG00000043877	srek1	57	48.780	ENSCING00000022892	-	70	49.653	Ciona_intestinalis
ENSAMXG00000043877	srek1	65	74.462	ENSCANG00000030421	SREK1	92	77.957	Colobus_angolensis_palliatus
ENSAMXG00000043877	srek1	100	70.532	ENSDARG00000009764	srek1	100	67.619	Danio_rerio
ENSAMXG00000043877	srek1	57	39.085	FBgn0024285	Srp54	53	38.356	Drosophila_melanogaster
ENSAMXG00000043877	srek1	59	44.257	ENSEASG00005007847	SRSF11	78	66.292	Equus_asinus_asinus
ENSAMXG00000043877	srek1	59	80.000	ENSELUG00000008230	srek1	55	80.984	Esox_lucius
ENSAMXG00000043877	srek1	75	51.733	ENSFHEG00000020971	srek1	97	51.351	Fundulus_heteroclitus
ENSAMXG00000043877	srek1	76	67.784	ENSGAGG00000006087	SREK1	62	86.420	Gopherus_agassizii
ENSAMXG00000043877	srek1	69	69.855	ENSGGOG00000004737	SREK1	92	77.957	Gorilla_gorilla
ENSAMXG00000043877	srek1	99	72.885	ENSIPUG00000016851	srek1	100	69.392	Ictalurus_punctatus
ENSAMXG00000043877	srek1	57	80.769	ENSSTOG00000008850	SREK1	85	82.353	Ictidomys_tridecemlineatus
ENSAMXG00000043877	srek1	55	44.444	ENSSTOG00000008675	SRSF11	57	39.550	Ictidomys_tridecemlineatus
ENSAMXG00000043877	srek1	58	39.583	ENSKMAG00000009775	srsf11	93	35.556	Kryptolebias_marmoratus
ENSAMXG00000043877	srek1	57	81.119	ENSLAFG00000013853	SREK1	59	58.947	Loxodonta_africana
ENSAMXG00000043877	srek1	65	74.462	ENSMFAG00000039823	SREK1	92	77.957	Macaca_fascicularis
ENSAMXG00000043877	srek1	57	80.070	ENSMMUG00000014586	SREK1	79	81.395	Macaca_mulatta
ENSAMXG00000043877	srek1	65	74.462	ENSMNEG00000030723	SREK1	92	77.957	Macaca_nemestrina
ENSAMXG00000043877	srek1	65	74.462	ENSMLEG00000039078	SREK1	92	77.957	Mandrillus_leucophaeus
ENSAMXG00000043877	srek1	58	42.361	ENSMAMG00000015002	-	92	62.376	Mastacembelus_armatus
ENSAMXG00000043877	srek1	57	80.000	ENSMAUG00000010066	-	58	77.005	Mesocricetus_auratus
ENSAMXG00000043877	srek1	57	80.420	ENSMICG00000034959	SREK1	92	77.957	Microcebus_murinus
ENSAMXG00000043877	srek1	57	78.966	ENSMOCG00000001536	-	57	77.005	Microtus_ochrogaster
ENSAMXG00000043877	srek1	99	59.038	ENSMALG00000017086	srek1	98	88.506	Monopterus_albus
ENSAMXG00000043877	srek1	55	43.403	MGP_CAROLIEiJ_G0025767	Srsf11	86	68.605	Mus_caroli
ENSAMXG00000043877	srek1	58	43.056	ENSMUSG00000055436	Srsf11	85	68.605	Mus_musculus
ENSAMXG00000043877	srek1	58	43.403	MGP_PahariEiJ_G0027217	Srsf11	86	68.605	Mus_pahari
ENSAMXG00000043877	srek1	58	43.403	MGP_SPRETEiJ_G0026719	Srsf11	86	68.605	Mus_spretus
ENSAMXG00000043877	srek1	65	74.462	ENSNLEG00000003827	SREK1	85	81.176	Nomascus_leucogenys
ENSAMXG00000043877	srek1	57	81.119	ENSOPRG00000012111	SREK1	52	80.345	Ochotona_princeps
ENSAMXG00000043877	srek1	58	84.375	ENSONIG00000011080	srek1	67	84.642	Oreochromis_niloticus
ENSAMXG00000043877	srek1	98	56.164	ENSOMEG00000015817	srek1	97	56.879	Oryzias_melastigma
ENSAMXG00000043877	srek1	57	80.000	ENSPPAG00000031605	SREK1	92	77.957	Pan_paniscus
ENSAMXG00000043877	srek1	57	80.420	ENSPPRG00000024617	SREK1	85	82.353	Panthera_pardus
ENSAMXG00000043877	srek1	57	80.420	ENSPTIG00000006608	SREK1	85	82.353	Panthera_tigris_altaica
ENSAMXG00000043877	srek1	57	80.070	ENSPTRG00000016936	SREK1	92	77.957	Pan_troglodytes
ENSAMXG00000043877	srek1	65	74.462	ENSPANG00000008953	SREK1	92	77.957	Papio_anubis
ENSAMXG00000043877	srek1	99	71.103	ENSPKIG00000025563	srek1	98	67.871	Paramormyrops_kingsleyae
ENSAMXG00000043877	srek1	96	51.020	ENSPEMG00000024051	-	59	77.005	Peromyscus_maniculatus_bairdii
ENSAMXG00000043877	srek1	58	39.931	ENSPLAG00000009484	-	77	57.143	Poecilia_latipinna
ENSAMXG00000043877	srek1	57	80.420	ENSPCOG00000026230	SREK1	92	77.957	Propithecus_coquereli
ENSAMXG00000043877	srek1	53	86.667	ENSPNYG00000007160	srek1	98	54.925	Pundamilia_nyererei
ENSAMXG00000043877	srek1	100	79.482	ENSPNAG00000004328	srek1	100	80.478	Pygocentrus_nattereri
ENSAMXG00000043877	srek1	55	45.139	ENSRBIG00000042971	SRSF11	75	62.887	Rhinopithecus_bieti
ENSAMXG00000043877	srek1	57	80.070	ENSRBIG00000033818	SREK1	92	79.144	Rhinopithecus_bieti
ENSAMXG00000043877	srek1	65	74.462	ENSRROG00000017210	SREK1	92	77.957	Rhinopithecus_roxellana
ENSAMXG00000043877	srek1	57	80.070	ENSSBOG00000031230	SREK1	92	77.957	Saimiri_boliviensis_boliviensis
ENSAMXG00000043877	srek1	55	44.792	ENSSBOG00000033461	SRSF11	75	62.887	Saimiri_boliviensis_boliviensis
ENSAMXG00000043877	srek1	100	68.411	ENSSFOG00015004995	srek1	97	68.411	Scleropages_formosus
ENSAMXG00000043877	srek1	99	61.089	ENSSMAG00000011808	srek1	59	82.935	Scophthalmus_maximus
ENSAMXG00000043877	srek1	58	42.215	ENSSLDG00000012105	-	91	62.376	Seriola_lalandi_dorsalis
ENSAMXG00000043877	srek1	59	79.452	ENSSPUG00000016553	SREK1	89	81.053	Sphenodon_punctatus
ENSAMXG00000043877	srek1	58	41.319	ENSSPAG00000016483	-	66	68.293	Stegastes_partitus
ENSAMXG00000043877	srek1	78	69.821	ENSTNIG00000013463	srek1	69	82.230	Tetraodon_nigroviridis
ENSAMXG00000043877	srek1	57	45.105	ENSTTRG00000015054	SRSF11	53	41.477	Tursiops_truncatus
ENSAMXG00000043877	srek1	58	75.658	ENSXETG00000021460	srek1	61	75.000	Xenopus_tropicalis
ENSAMXG00000043877	srek1	58	40.625	ENSXMAG00000019180	SRSF11	74	57.143	Xiphophorus_maculatus