EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000044118 (Gene tree)
Gene ID: 103027106
Gene Symbol: srprb
Alias: wu:fk57h10|zgc:111820|zgc:92746
Full Name: SRP receptor subunit beta
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 5773 bases
Position: chr17:7606409-7612181
Accession: 103027106
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000030748	MMR_HSR1	PF01926.23	2.7e-09	1	1
ENSAMXP00000027875	MMR_HSR1	PF01926.23	1.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000056275	-	759	-	ENSAMXP00000030748	252 (aa)	-	-
ENSAMXT00000051250	-	2030	XM_022678805	ENSAMXP00000027875	266 (aa)	XP_022534526	UPI000BBD8E5A
ENSAMXT00000044477	-	1952	-	ENSAMXP00000033318	240 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000044118's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000044118's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000044118	srprb	62	33.728	ENSAMXG00000037485	arf2b	89	32.727
ENSAMXG00000044118	srprb	62	31.176	ENSAMXG00000019845	arf1	89	31.176
ENSAMXG00000044118	srprb	62	33.136	ENSAMXG00000035742	arf2a	87	33.136
ENSAMXG00000044118	srprb	65	31.034	ENSAMXG00000004249	-	90	31.034
ENSAMXG00000044118	srprb	56	30.000	ENSAMXG00000010445	arl8	78	30.000
ENSAMXG00000044118	srprb	60	30.625	ENSAMXG00000024897	-	74	30.625
ENSAMXG00000044118	srprb	52	31.159	ENSAMXG00000012281	arl11	75	31.159
ENSAMXG00000044118	srprb	62	31.953	ENSAMXG00000016434	arf3a	69	31.953
ENSAMXG00000044118	srprb	51	31.111	ENSAMXG00000021056	arl1	72	30.370
ENSAMXG00000044118	srprb	65	30.460	ENSAMXG00000038224	-	90	30.460
ENSAMXG00000044118	srprb	65	30.460	ENSAMXG00000031774	ARF5	90	30.460

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000044118	srprb	100	71.642	ENSAPOG00000021219	srprb	97	71.642	Acanthochromis_polyacanthus
ENSAMXG00000044118	srprb	100	71.053	ENSACIG00000014621	srprb	100	71.053	Amphilophus_citrinellus
ENSAMXG00000044118	srprb	100	70.522	ENSAOCG00000017265	srprb	97	70.522	Amphiprion_ocellaris
ENSAMXG00000044118	srprb	100	70.522	ENSAPEG00000024541	srprb	86	70.522	Amphiprion_percula
ENSAMXG00000044118	srprb	100	71.429	ENSATEG00000014016	srprb	97	71.429	Anabas_testudineus
ENSAMXG00000044118	srprb	99	72.453	ENSACLG00000016748	srprb	96	72.453	Astatotilapia_calliptera
ENSAMXG00000044118	srprb	100	68.797	ENSCSEG00000017194	srprb	97	68.797	Cynoglossus_semilaevis
ENSAMXG00000044118	srprb	100	69.925	ENSCVAG00000004221	srprb	100	69.925	Cyprinodon_variegatus
ENSAMXG00000044118	srprb	100	68.421	ENSDARG00000030949	srprb	100	68.421	Danio_rerio
ENSAMXG00000044118	srprb	94	73.307	ENSELUG00000009740	srprb	93	73.307	Esox_lucius
ENSAMXG00000044118	srprb	100	69.173	ENSFHEG00000006004	srprb	100	69.173	Fundulus_heteroclitus
ENSAMXG00000044118	srprb	100	67.293	ENSGMOG00000002081	srprb	98	67.293	Gadus_morhua
ENSAMXG00000044118	srprb	99	69.318	ENSGAFG00000012593	srprb	99	69.318	Gambusia_affinis
ENSAMXG00000044118	srprb	100	70.677	ENSGACG00000009891	srprb	98	70.677	Gasterosteus_aculeatus
ENSAMXG00000044118	srprb	99	72.453	ENSHBUG00000002145	srprb	96	72.453	Haplochromis_burtoni
ENSAMXG00000044118	srprb	95	72.441	ENSHCOG00000007732	srprb	96	72.157	Hippocampus_comes
ENSAMXG00000044118	srprb	100	76.030	ENSIPUG00000004177	srprb	100	76.030	Ictalurus_punctatus
ENSAMXG00000044118	srprb	94	71.315	ENSKMAG00000020736	srprb	94	71.315	Kryptolebias_marmoratus
ENSAMXG00000044118	srprb	100	71.805	ENSLBEG00000021483	srprb	97	71.805	Labrus_bergylta
ENSAMXG00000044118	srprb	99	66.541	ENSLOCG00000009740	srprb	89	66.917	Lepisosteus_oculatus
ENSAMXG00000044118	srprb	100	70.677	ENSMAMG00000011876	srprb	97	70.677	Mastacembelus_armatus
ENSAMXG00000044118	srprb	95	75.099	ENSMZEG00005016621	srprb	98	75.099	Maylandia_zebra
ENSAMXG00000044118	srprb	100	71.805	ENSMMOG00000012550	srprb	98	71.805	Mola_mola
ENSAMXG00000044118	srprb	100	69.549	ENSMALG00000012595	srprb	97	69.549	Monopterus_albus
ENSAMXG00000044118	srprb	73	69.744	ENSNBRG00000004699	srprb	92	63.927	Neolamprologus_brichardi
ENSAMXG00000044118	srprb	99	71.970	ENSONIG00000003788	srprb	79	71.970	Oreochromis_niloticus
ENSAMXG00000044118	srprb	100	67.518	ENSORLG00000006430	srprb	100	67.518	Oryzias_latipes
ENSAMXG00000044118	srprb	99	67.766	ENSORLG00020003413	srprb	99	67.766	Oryzias_latipes_hni
ENSAMXG00000044118	srprb	99	67.766	ENSORLG00015000166	srprb	99	67.766	Oryzias_latipes_hsok
ENSAMXG00000044118	srprb	95	71.825	ENSOMEG00000012735	srprb	92	71.825	Oryzias_melastigma
ENSAMXG00000044118	srprb	100	67.416	ENSPKIG00000013147	srprb	99	67.416	Paramormyrops_kingsleyae
ENSAMXG00000044118	srprb	95	73.016	ENSPMGG00000014061	srprb	92	73.016	Periophthalmus_magnuspinnatus
ENSAMXG00000044118	srprb	99	69.697	ENSPFOG00000011347	srprb	96	69.697	Poecilia_formosa
ENSAMXG00000044118	srprb	95	72.222	ENSPLAG00000001156	srprb	98	72.222	Poecilia_latipinna
ENSAMXG00000044118	srprb	95	71.825	ENSPMEG00000012169	srprb	98	71.825	Poecilia_mexicana
ENSAMXG00000044118	srprb	95	71.032	ENSPREG00000001449	srprb	100	69.767	Poecilia_reticulata
ENSAMXG00000044118	srprb	99	72.453	ENSPNYG00000005911	srprb	96	72.453	Pundamilia_nyererei
ENSAMXG00000044118	srprb	100	82.331	ENSPNAG00000009983	srprb	100	82.331	Pygocentrus_nattereri
ENSAMXG00000044118	srprb	95	71.146	ENSSFOG00015019355	srprb	96	69.767	Scleropages_formosus
ENSAMXG00000044118	srprb	100	68.797	ENSSMAG00000013202	srprb	97	68.797	Scophthalmus_maximus
ENSAMXG00000044118	srprb	100	70.301	ENSSDUG00000018746	srprb	91	70.301	Seriola_dumerili
ENSAMXG00000044118	srprb	100	70.677	ENSSLDG00000020560	srprb	97	70.677	Seriola_lalandi_dorsalis
ENSAMXG00000044118	srprb	100	71.642	ENSSPAG00000008898	srprb	97	71.642	Stegastes_partitus
ENSAMXG00000044118	srprb	100	69.173	ENSTRUG00000022463	srprb	97	69.173	Takifugu_rubripes
ENSAMXG00000044118	srprb	98	65.649	ENSTNIG00000007725	srprb	100	65.649	Tetraodon_nigroviridis
ENSAMXG00000044118	srprb	95	72.619	ENSXCOG00000012585	srprb	98	72.619	Xiphophorus_couchianus
ENSAMXG00000044118	srprb	95	72.222	ENSXMAG00000028725	srprb	98	72.222	Xiphophorus_maculatus