EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSANAG00000000059 (Gene tree)
Gene ID: 105709845
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Aotus_nancymaae
Status: putative
Strand: Minus strand
Length: 88850 bases
Position: chrKZ196972.1:4714295-4803144
Accession: 105709845
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSANAP00000000106	RRM_1	PF00076.22	1.6e-32	1	2
ENSANAP00000000106	RRM_1	PF00076.22	1.6e-32	2	2
ENSANAP00000000101	RRM_1	PF00076.22	3.6e-32	1	2
ENSANAP00000000101	RRM_1	PF00076.22	3.6e-32	2	2
ENSANAP00000000099	RRM_1	PF00076.22	3.9e-32	1	2
ENSANAP00000000099	RRM_1	PF00076.22	3.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSANAT00000000991	PSPC1-203	1176	-	ENSANAP00000000106	391 (aa)	-	A0A2K5BUJ0
ENSANAT00000000964	PSPC1-201	1804	XM_012441988	ENSANAP00000000099	521 (aa)	XP_012297411	A0A2K5BUH6
ENSANAT00000000984	PSPC1-202	1500	-	ENSANAP00000000101	499 (aa)	-	A0A2K5BUI5

Gene Model

Click here to download ENSANAG00000000059's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSANAG00000000059's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSANAG00000000059	PSPC1	73	45.550	ENSANAG00000037798	-	77	52.297
ENSANAG00000000059	PSPC1	91	58.861	ENSANAG00000033266	-	83	72.549
ENSANAG00000000059	PSPC1	72	40.327	ENSANAG00000021268	-	77	45.896
ENSANAG00000000059	PSPC1	82	56.037	ENSANAG00000027089	-	80	53.191
ENSANAG00000000059	PSPC1	84	41.818	ENSANAG00000035751	-	95	62.500
ENSANAG00000000059	PSPC1	84	54.054	ENSANAG00000027438	-	50	60.828

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSANAG00000000059	PSPC1	100	98.853	ENSG00000121390	PSPC1	100	98.853	Homo_sapiens
ENSANAG00000000059	PSPC1	83	78.704	ENSAPOG00000015946	pspc1	87	69.392	Acanthochromis_polyacanthus
ENSANAG00000000059	PSPC1	100	98.656	ENSAMEG00000017420	PSPC1	100	98.656	Ailuropoda_melanoleuca
ENSANAG00000000059	PSPC1	98	61.795	ENSACIG00000018695	pspc1	100	58.301	Amphilophus_citrinellus
ENSANAG00000000059	PSPC1	83	78.086	ENSAOCG00000005279	pspc1	87	68.750	Amphiprion_ocellaris
ENSANAG00000000059	PSPC1	83	78.086	ENSAPEG00000015927	pspc1	87	68.973	Amphiprion_percula
ENSANAG00000000059	PSPC1	95	63.731	ENSATEG00000004878	pspc1	86	62.252	Anabas_testudineus
ENSANAG00000000059	PSPC1	84	71.601	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSANAG00000000059	PSPC1	77	93.564	ENSAPLG00000006246	PSPC1	100	93.564	Anas_platyrhynchos
ENSANAG00000000059	PSPC1	73	70.732	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSANAG00000000059	PSPC1	99	82.931	ENSACAG00000002093	PSPC1	99	84.571	Anolis_carolinensis
ENSANAG00000000059	PSPC1	99	61.750	ENSACLG00000027220	pspc1	100	56.333	Astatotilapia_calliptera
ENSANAG00000000059	PSPC1	98	67.337	ENSAMXG00000036881	pspc1	83	71.681	Astyanax_mexicanus
ENSANAG00000000059	PSPC1	100	95.969	ENSBTAG00000003934	PSPC1	100	95.969	Bos_taurus
ENSANAG00000000059	PSPC1	100	99.616	ENSCJAG00000004554	PSPC1	100	99.616	Callithrix_jacchus
ENSANAG00000000059	PSPC1	100	98.848	ENSCAFG00020002009	PSPC1	100	98.848	Canis_lupus_dingo
ENSANAG00000000059	PSPC1	100	95.969	ENSCHIG00000016708	PSPC1	100	95.969	Capra_hircus
ENSANAG00000000059	PSPC1	76	95.103	ENSTSYG00000032882	PSPC1	93	91.176	Carlito_syrichta
ENSANAG00000000059	PSPC1	100	97.313	ENSCPOG00000000395	PSPC1	100	97.313	Cavia_porcellus
ENSANAG00000000059	PSPC1	100	99.616	ENSCCAG00000033498	PSPC1	100	99.616	Cebus_capucinus
ENSANAG00000000059	PSPC1	100	98.470	ENSCATG00000036434	PSPC1	100	98.470	Cercocebus_atys
ENSANAG00000000059	PSPC1	88	87.905	ENSCLAG00000005241	PSPC1	99	87.905	Chinchilla_lanigera
ENSANAG00000000059	PSPC1	98	94.560	ENSCHOG00000008913	PSPC1	100	91.013	Choloepus_hoffmanni
ENSANAG00000000059	PSPC1	99	86.502	ENSCPBG00000020859	PSPC1	99	87.645	Chrysemys_picta_bellii
ENSANAG00000000059	PSPC1	73	61.053	ENSCSAVG00000003533	-	63	55.917	Ciona_savignyi
ENSANAG00000000059	PSPC1	77	90.339	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSANAG00000000059	PSPC1	100	97.514	ENSCGRG00001018368	Pspc1	100	97.514	Cricetulus_griseus_chok1gshd
ENSANAG00000000059	PSPC1	100	97.514	ENSCGRG00000011724	Pspc1	100	97.514	Cricetulus_griseus_crigri
ENSANAG00000000059	PSPC1	82	76.250	ENSCVAG00000007679	-	92	62.173	Cyprinodon_variegatus
ENSANAG00000000059	PSPC1	98	70.207	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSANAG00000000059	PSPC1	100	96.750	ENSDNOG00000011078	PSPC1	100	96.750	Dasypus_novemcinctus
ENSANAG00000000059	PSPC1	100	94.455	ENSDORG00000016050	Pspc1	100	93.881	Dipodomys_ordii
ENSANAG00000000059	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSANAG00000000059	PSPC1	82	45.087	ENSEBUG00000010133	pspc1	82	47.302	Eptatretus_burgeri
ENSANAG00000000059	PSPC1	82	70.859	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSANAG00000000059	PSPC1	100	97.889	ENSEASG00005000119	PSPC1	100	97.889	Equus_asinus_asinus
ENSANAG00000000059	PSPC1	100	97.889	ENSECAG00000017286	PSPC1	100	97.889	Equus_caballus
ENSANAG00000000059	PSPC1	92	82.812	ENSEEUG00000011288	-	88	82.500	Erinaceus_europaeus
ENSANAG00000000059	PSPC1	98	70.918	ENSELUG00000003746	pspc1	94	72.564	Esox_lucius
ENSANAG00000000059	PSPC1	100	98.848	ENSFCAG00000027841	PSPC1	100	98.848	Felis_catus
ENSANAG00000000059	PSPC1	89	94.433	ENSFALG00000008750	PSPC1	99	87.572	Ficedula_albicollis
ENSANAG00000000059	PSPC1	100	95.202	ENSFDAG00000002617	PSPC1	100	95.202	Fukomys_damarensis
ENSANAG00000000059	PSPC1	73	83.566	ENSGMOG00000015074	pspc1	86	65.875	Gadus_morhua
ENSANAG00000000059	PSPC1	99	87.287	ENSGALG00000017142	PSPC1	99	88.439	Gallus_gallus
ENSANAG00000000059	PSPC1	98	66.244	ENSGAFG00000006327	pspc1	82	66.244	Gambusia_affinis
ENSANAG00000000059	PSPC1	83	71.914	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSANAG00000000059	PSPC1	99	87.885	ENSGAGG00000019164	PSPC1	99	87.645	Gopherus_agassizii
ENSANAG00000000059	PSPC1	88	68.678	ENSGAGG00000017325	-	58	66.841	Gopherus_agassizii
ENSANAG00000000059	PSPC1	100	98.662	ENSGGOG00000003414	PSPC1	100	98.662	Gorilla_gorilla
ENSANAG00000000059	PSPC1	98	68.702	ENSHBUG00000001139	pspc1	100	63.586	Haplochromis_burtoni
ENSANAG00000000059	PSPC1	100	97.313	ENSHGLG00000018811	PSPC1	100	97.313	Heterocephalus_glaber_female
ENSANAG00000000059	PSPC1	89	93.103	ENSHGLG00100007962	PSPC1	100	93.103	Heterocephalus_glaber_male
ENSANAG00000000059	PSPC1	91	67.039	ENSHCOG00000013251	pspc1	92	65.942	Hippocampus_comes
ENSANAG00000000059	PSPC1	98	71.503	ENSIPUG00000013192	pspc1	100	67.355	Ictalurus_punctatus
ENSANAG00000000059	PSPC1	100	97.897	ENSSTOG00000026833	PSPC1	100	97.897	Ictidomys_tridecemlineatus
ENSANAG00000000059	PSPC1	100	97.323	ENSJJAG00000018334	Pspc1	100	97.323	Jaculus_jaculus
ENSANAG00000000059	PSPC1	88	55.724	ENSKMAG00000013525	-	96	50.860	Kryptolebias_marmoratus
ENSANAG00000000059	PSPC1	93	71.154	ENSLBEG00000004474	pspc1	78	70.698	Labrus_bergylta
ENSANAG00000000059	PSPC1	99	78.286	ENSLACG00000010762	PSPC1	99	77.589	Latimeria_chalumnae
ENSANAG00000000059	PSPC1	99	77.885	ENSLOCG00000010832	pspc1	99	77.055	Lepisosteus_oculatus
ENSANAG00000000059	PSPC1	100	97.132	ENSLAFG00000010968	PSPC1	100	97.132	Loxodonta_africana
ENSANAG00000000059	PSPC1	100	98.470	ENSMFAG00000032728	PSPC1	100	98.470	Macaca_fascicularis
ENSANAG00000000059	PSPC1	100	98.470	ENSMMUG00000020262	PSPC1	100	98.470	Macaca_mulatta
ENSANAG00000000059	PSPC1	100	98.470	ENSMNEG00000027401	PSPC1	100	98.470	Macaca_nemestrina
ENSANAG00000000059	PSPC1	100	99.499	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSANAG00000000059	PSPC1	83	76.852	ENSMAMG00000004333	pspc1	91	63.441	Mastacembelus_armatus
ENSANAG00000000059	PSPC1	99	61.750	ENSMZEG00005005726	pspc1	100	56.333	Maylandia_zebra
ENSANAG00000000059	PSPC1	78	93.350	ENSMGAG00000015134	PSPC1	100	93.350	Meleagris_gallopavo
ENSANAG00000000059	PSPC1	98	89.286	ENSMAUG00000021067	Pspc1	99	92.208	Mesocricetus_auratus
ENSANAG00000000059	PSPC1	100	97.505	ENSMICG00000013970	PSPC1	100	97.505	Microcebus_murinus
ENSANAG00000000059	PSPC1	100	97.514	ENSMOCG00000006060	Pspc1	100	97.514	Microtus_ochrogaster
ENSANAG00000000059	PSPC1	89	52.722	ENSMMOG00000004352	pspc1	58	57.372	Mola_mola
ENSANAG00000000059	PSPC1	98	94.041	ENSMODG00000008029	PSPC1	80	94.758	Monodelphis_domestica
ENSANAG00000000059	PSPC1	92	67.347	ENSMALG00000008914	pspc1	92	65.447	Monopterus_albus
ENSANAG00000000059	PSPC1	100	97.519	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.519	Mus_caroli
ENSANAG00000000059	PSPC1	100	97.710	ENSMUSG00000021938	Pspc1	100	97.710	Mus_musculus
ENSANAG00000000059	PSPC1	100	97.519	MGP_PahariEiJ_G0030359	Pspc1	100	97.519	Mus_pahari
ENSANAG00000000059	PSPC1	100	97.519	MGP_SPRETEiJ_G0020232	Pspc1	100	97.519	Mus_spretus
ENSANAG00000000059	PSPC1	100	98.464	ENSMPUG00000013347	PSPC1	100	98.464	Mustela_putorius_furo
ENSANAG00000000059	PSPC1	100	96.565	ENSMLUG00000017663	PSPC1	100	96.565	Myotis_lucifugus
ENSANAG00000000059	PSPC1	100	97.706	ENSNGAG00000011271	Pspc1	100	97.706	Nannospalax_galili
ENSANAG00000000059	PSPC1	98	63.544	ENSNBRG00000014059	pspc1	92	65.625	Neolamprologus_brichardi
ENSANAG00000000059	PSPC1	100	98.662	ENSNLEG00000001294	PSPC1	100	98.662	Nomascus_leucogenys
ENSANAG00000000059	PSPC1	84	94.531	ENSMEUG00000000476	PSPC1	84	95.312	Notamacropus_eugenii
ENSANAG00000000059	PSPC1	100	86.372	ENSODEG00000007817	-	100	85.409	Octodon_degus
ENSANAG00000000059	PSPC1	98	90.104	ENSODEG00000019012	-	100	85.958	Octodon_degus
ENSANAG00000000059	PSPC1	98	68.957	ENSONIG00000012010	pspc1	99	62.888	Oreochromis_niloticus
ENSANAG00000000059	PSPC1	99	66.092	ENSOANG00000011381	-	99	64.054	Ornithorhynchus_anatinus
ENSANAG00000000059	PSPC1	77	97.494	ENSOANG00000009017	-	100	97.494	Ornithorhynchus_anatinus
ENSANAG00000000059	PSPC1	100	98.088	ENSOCUG00000006153	PSPC1	100	98.088	Oryctolagus_cuniculus
ENSANAG00000000059	PSPC1	83	76.543	ENSORLG00000004232	-	91	62.648	Oryzias_latipes
ENSANAG00000000059	PSPC1	83	76.852	ENSORLG00020000578	PSPC1	91	63.800	Oryzias_latipes_hni
ENSANAG00000000059	PSPC1	83	76.852	ENSORLG00015017480	pspc1	86	66.739	Oryzias_latipes_hsok
ENSANAG00000000059	PSPC1	54	82.857	ENSOMEG00000003779	pspc1	96	82.857	Oryzias_melastigma
ENSANAG00000000059	PSPC1	100	98.853	ENSOGAG00000012643	PSPC1	100	98.853	Otolemur_garnettii
ENSANAG00000000059	PSPC1	100	91.396	ENSOARG00000014163	PSPC1	100	91.396	Ovis_aries
ENSANAG00000000059	PSPC1	89	97.065	ENSPPAG00000009836	PSPC1	98	97.065	Pan_paniscus
ENSANAG00000000059	PSPC1	100	98.848	ENSPPRG00000008833	PSPC1	100	98.848	Panthera_pardus
ENSANAG00000000059	PSPC1	100	83.301	ENSPTIG00000016917	PSPC1	100	83.301	Panthera_tigris_altaica
ENSANAG00000000059	PSPC1	98	97.276	ENSPTRG00000005677	PSPC1	99	98.971	Pan_troglodytes
ENSANAG00000000059	PSPC1	100	98.662	ENSPANG00000001992	PSPC1	100	98.662	Papio_anubis
ENSANAG00000000059	PSPC1	98	74.026	ENSPKIG00000003578	pspc1	88	74.414	Paramormyrops_kingsleyae
ENSANAG00000000059	PSPC1	99	86.441	ENSPSIG00000005168	PSPC1	99	87.091	Pelodiscus_sinensis
ENSANAG00000000059	PSPC1	82	69.018	ENSPMGG00000015135	pspc1	87	70.476	Periophthalmus_magnuspinnatus
ENSANAG00000000059	PSPC1	100	97.897	ENSPEMG00000015214	Pspc1	100	97.897	Peromyscus_maniculatus_bairdii
ENSANAG00000000059	PSPC1	71	44.792	ENSPMAG00000004618	pspc1	88	44.792	Petromyzon_marinus
ENSANAG00000000059	PSPC1	99	96.743	ENSPCIG00000017680	PSPC1	100	96.743	Phascolarctos_cinereus
ENSANAG00000000059	PSPC1	94	68.700	ENSPFOG00000003362	pspc1	88	68.076	Poecilia_formosa
ENSANAG00000000059	PSPC1	97	67.008	ENSPLAG00000011540	pspc1	87	67.653	Poecilia_latipinna
ENSANAG00000000059	PSPC1	78	67.974	ENSPLAG00000004407	-	53	60.209	Poecilia_latipinna
ENSANAG00000000059	PSPC1	76	68.667	ENSPMEG00000001025	-	52	60.638	Poecilia_mexicana
ENSANAG00000000059	PSPC1	97	66.496	ENSPMEG00000008322	pspc1	87	67.230	Poecilia_mexicana
ENSANAG00000000059	PSPC1	97	66.240	ENSPREG00000007786	pspc1	87	67.653	Poecilia_reticulata
ENSANAG00000000059	PSPC1	100	98.088	ENSPPYG00000005186	PSPC1	100	98.088	Pongo_abelii
ENSANAG00000000059	PSPC1	72	94.410	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSANAG00000000059	PSPC1	98	96.124	ENSPCOG00000014364	PSPC1	100	94.073	Propithecus_coquereli
ENSANAG00000000059	PSPC1	100	94.626	ENSPVAG00000005036	PSPC1	100	95.010	Pteropus_vampyrus
ENSANAG00000000059	PSPC1	99	62.000	ENSPNYG00000008893	pspc1	100	56.522	Pundamilia_nyererei
ENSANAG00000000059	PSPC1	98	71.835	ENSPNAG00000016511	pspc1	100	67.850	Pygocentrus_nattereri
ENSANAG00000000059	PSPC1	100	97.897	ENSRNOG00000020782	Pspc1	100	97.897	Rattus_norvegicus
ENSANAG00000000059	PSPC1	93	98.973	ENSRBIG00000036057	PSPC1	100	98.973	Rhinopithecus_bieti
ENSANAG00000000059	PSPC1	100	98.662	ENSRROG00000036334	PSPC1	100	98.662	Rhinopithecus_roxellana
ENSANAG00000000059	PSPC1	78	93.862	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSANAG00000000059	PSPC1	100	90.667	ENSSHAG00000004696	PSPC1	100	91.048	Sarcophilus_harrisii
ENSANAG00000000059	PSPC1	83	83.129	ENSSFOG00015001395	pspc1	90	78.605	Scleropages_formosus
ENSANAG00000000059	PSPC1	88	72.443	ENSSMAG00000001761	pspc1	86	74.928	Scophthalmus_maximus
ENSANAG00000000059	PSPC1	83	78.704	ENSSDUG00000010651	pspc1	80	71.903	Seriola_dumerili
ENSANAG00000000059	PSPC1	83	70.997	ENSSLDG00000004284	pspc1	86	62.896	Seriola_lalandi_dorsalis
ENSANAG00000000059	PSPC1	100	90.019	ENSSARG00000000888	PSPC1	100	90.403	Sorex_araneus
ENSANAG00000000059	PSPC1	82	63.863	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSANAG00000000059	PSPC1	99	78.641	ENSSPUG00000008550	PSPC1	99	79.447	Sphenodon_punctatus
ENSANAG00000000059	PSPC1	87	75.811	ENSSPAG00000001921	pspc1	81	70.917	Stegastes_partitus
ENSANAG00000000059	PSPC1	100	97.126	ENSSSCG00000009569	PSPC1	100	97.126	Sus_scrofa
ENSANAG00000000059	PSPC1	89	94.433	ENSTGUG00000011295	PSPC1	100	94.433	Taeniopygia_guttata
ENSANAG00000000059	PSPC1	83	70.062	ENSTRUG00000011335	pspc1	77	65.937	Takifugu_rubripes
ENSANAG00000000059	PSPC1	83	70.679	ENSTNIG00000010358	pspc1	88	64.920	Tetraodon_nigroviridis
ENSANAG00000000059	PSPC1	98	84.635	ENSTBEG00000002361	PSPC1	100	76.200	Tupaia_belangeri
ENSANAG00000000059	PSPC1	100	97.318	ENSTTRG00000003343	PSPC1	100	97.318	Tursiops_truncatus
ENSANAG00000000059	PSPC1	89	98.854	ENSUAMG00000012309	PSPC1	100	98.854	Ursus_americanus
ENSANAG00000000059	PSPC1	93	98.357	ENSUMAG00000013993	PSPC1	100	98.357	Ursus_maritimus
ENSANAG00000000059	PSPC1	77	99.248	ENSVPAG00000010029	PSPC1	100	99.248	Vicugna_pacos
ENSANAG00000000059	PSPC1	100	98.848	ENSVVUG00000006414	PSPC1	100	99.219	Vulpes_vulpes
ENSANAG00000000059	PSPC1	98	66.162	ENSXCOG00000017438	pspc1	93	66.750	Xiphophorus_couchianus
ENSANAG00000000059	PSPC1	98	66.414	ENSXMAG00000007929	pspc1	93	67.000	Xiphophorus_maculatus