EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSANAG00000027743 (Gene tree)
Gene ID: 105732616
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Aotus_nancymaae
Status: putative
Strand: Minus strand
Length: 11552 bases
Position: chrKZ198626.1:320597-332148
Accession: 105732616
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSANAP00000019931	APOBEC_N	PF08210.11	2e-27	1	1
ENSANAP00000019931	APOBEC_C	PF05240.14	2.7e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSANAT00000037806	APOBEC1-201	1119	XM_012474806	ENSANAP00000019931	248 (aa)	XP_012330229	A0A2K5DG70

Gene Model

Click here to download ENSANAG00000027743's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSANAG00000027743's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSANAG00000027743	APOBEC1	73	32.331	ENSANAG00000028416	-	71	32.331
ENSANAG00000027743	APOBEC1	50	32.374	ENSANAG00000020573	-	69	32.374
ENSANAG00000027743	APOBEC1	50	35.938	ENSANAG00000022438	AICDA	64	35.938

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSANAG00000027743	APOBEC1	95	88.983	ENSG00000111701	APOBEC1	100	88.983	Homo_sapiens
ENSANAG00000027743	APOBEC1	93	77.922	ENSAMEG00000007098	APOBEC1	98	77.922	Ailuropoda_melanoleuca
ENSANAG00000027743	APOBEC1	69	39.766	ENSACAG00000028578	-	93	39.766	Anolis_carolinensis
ENSANAG00000027743	APOBEC1	95	75.424	ENSBTAG00000014683	APOBEC1	100	75.424	Bos_taurus
ENSANAG00000027743	APOBEC1	89	92.308	ENSCJAG00000005398	APOBEC1	100	92.308	Callithrix_jacchus
ENSANAG00000027743	APOBEC1	95	77.119	ENSCAFG00000013901	APOBEC1	100	77.119	Canis_familiaris
ENSANAG00000027743	APOBEC1	91	76.991	ENSCAFG00020003511	APOBEC1	95	76.991	Canis_lupus_dingo
ENSANAG00000027743	APOBEC1	93	75.758	ENSCHIG00000011898	APOBEC1	96	75.758	Capra_hircus
ENSANAG00000027743	APOBEC1	57	82.270	ENSTSYG00000029141	APOBEC1	100	82.270	Carlito_syrichta
ENSANAG00000027743	APOBEC1	86	67.290	ENSCAPG00000015882	-	99	67.290	Cavia_aperea
ENSANAG00000027743	APOBEC1	95	65.532	ENSCPOG00000033068	APOBEC1	99	65.532	Cavia_porcellus
ENSANAG00000027743	APOBEC1	95	94.492	ENSCCAG00000022258	APOBEC1	100	94.492	Cebus_capucinus
ENSANAG00000027743	APOBEC1	100	91.129	ENSCATG00000021613	APOBEC1	100	91.129	Cercocebus_atys
ENSANAG00000027743	APOBEC1	92	68.122	ENSCLAG00000014645	APOBEC1	99	68.122	Chinchilla_lanigera
ENSANAG00000027743	APOBEC1	76	92.553	ENSCSAG00000009817	APOBEC1	98	92.553	Chlorocebus_sabaeus
ENSANAG00000027743	APOBEC1	74	46.237	ENSCPBG00000017398	-	81	46.237	Chrysemys_picta_bellii
ENSANAG00000027743	APOBEC1	75	47.619	ENSCPBG00000014335	-	77	47.619	Chrysemys_picta_bellii
ENSANAG00000027743	APOBEC1	90	37.885	ENSCPBG00000014327	-	86	37.946	Chrysemys_picta_bellii
ENSANAG00000027743	APOBEC1	79	45.960	ENSCPBG00000014328	-	86	45.960	Chrysemys_picta_bellii
ENSANAG00000027743	APOBEC1	79	51.020	ENSCPBG00000014329	-	54	51.020	Chrysemys_picta_bellii
ENSANAG00000027743	APOBEC1	93	41.277	ENSCPBG00000014331	-	94	41.277	Chrysemys_picta_bellii
ENSANAG00000027743	APOBEC1	93	90.000	ENSCANG00000038359	APOBEC1	100	90.000	Colobus_angolensis_palliatus
ENSANAG00000027743	APOBEC1	92	69.869	ENSCGRG00001011130	Apobec1	100	69.869	Cricetulus_griseus_chok1gshd
ENSANAG00000027743	APOBEC1	92	69.869	ENSCGRG00000008644	Apobec1	100	69.869	Cricetulus_griseus_crigri
ENSANAG00000027743	APOBEC1	95	78.814	ENSDNOG00000010926	APOBEC1	100	78.814	Dasypus_novemcinctus
ENSANAG00000027743	APOBEC1	86	63.551	ENSDORG00000023717	Apobec1	100	63.551	Dipodomys_ordii
ENSANAG00000027743	APOBEC1	94	75.745	ENSETEG00000004867	APOBEC1	99	75.745	Echinops_telfairi
ENSANAG00000027743	APOBEC1	93	81.818	ENSEASG00005015951	APOBEC1	97	81.818	Equus_asinus_asinus
ENSANAG00000027743	APOBEC1	77	84.737	ENSECAG00000017163	APOBEC1	99	84.737	Equus_caballus
ENSANAG00000027743	APOBEC1	89	66.516	ENSEEUG00000009112	-	98	66.516	Erinaceus_europaeus
ENSANAG00000027743	APOBEC1	85	53.333	ENSEEUG00000007530	-	100	53.333	Erinaceus_europaeus
ENSANAG00000027743	APOBEC1	95	79.661	ENSFCAG00000009350	APOBEC1	100	79.661	Felis_catus
ENSANAG00000027743	APOBEC1	57	47.552	ENSFALG00000007257	-	70	47.552	Ficedula_albicollis
ENSANAG00000027743	APOBEC1	83	57.971	ENSFDAG00000018470	APOBEC1	99	57.971	Fukomys_damarensis
ENSANAG00000027743	APOBEC1	69	47.368	ENSGAGG00000006624	-	62	47.368	Gopherus_agassizii
ENSANAG00000027743	APOBEC1	65	53.086	ENSGAGG00000004947	-	76	58.197	Gopherus_agassizii
ENSANAG00000027743	APOBEC1	87	47.248	ENSGAGG00000011837	-	86	53.333	Gopherus_agassizii
ENSANAG00000027743	APOBEC1	84	40.670	ENSGAGG00000021744	-	78	42.439	Gopherus_agassizii
ENSANAG00000027743	APOBEC1	76	41.753	ENSGAGG00000021745	-	69	41.753	Gopherus_agassizii
ENSANAG00000027743	APOBEC1	95	64.255	ENSHGLG00000001495	APOBEC1	99	64.255	Heterocephalus_glaber_female
ENSANAG00000027743	APOBEC1	95	63.404	ENSHGLG00100002187	APOBEC1	99	63.404	Heterocephalus_glaber_male
ENSANAG00000027743	APOBEC1	87	63.256	ENSSTOG00000021971	APOBEC1	100	79.592	Ictidomys_tridecemlineatus
ENSANAG00000027743	APOBEC1	92	73.799	ENSJJAG00000022108	Apobec1	100	73.799	Jaculus_jaculus
ENSANAG00000027743	APOBEC1	90	77.130	ENSLAFG00000030837	APOBEC1	100	77.130	Loxodonta_africana
ENSANAG00000027743	APOBEC1	95	91.525	ENSMFAG00000000277	APOBEC1	98	93.617	Macaca_fascicularis
ENSANAG00000027743	APOBEC1	95	91.102	ENSMNEG00000029670	APOBEC1	100	91.102	Macaca_nemestrina
ENSANAG00000027743	APOBEC1	95	90.678	ENSMLEG00000036301	APOBEC1	100	90.678	Mandrillus_leucophaeus
ENSANAG00000027743	APOBEC1	87	69.907	ENSMAUG00000022167	Apobec1	97	69.907	Mesocricetus_auratus
ENSANAG00000027743	APOBEC1	95	79.237	ENSMICG00000043645	APOBEC1	100	79.237	Microcebus_murinus
ENSANAG00000027743	APOBEC1	95	67.797	ENSMODG00000018004	APOBEC1	100	67.797	Monodelphis_domestica
ENSANAG00000027743	APOBEC1	92	69.298	ENSMUSG00000040613	Apobec1	99	69.298	Mus_musculus
ENSANAG00000027743	APOBEC1	92	67.982	MGP_PahariEiJ_G0022580	-	99	67.982	Mus_pahari
ENSANAG00000027743	APOBEC1	92	69.298	MGP_SPRETEiJ_G0029857	Apobec1	99	69.298	Mus_spretus
ENSANAG00000027743	APOBEC1	95	75.000	ENSMPUG00000017532	APOBEC1	100	75.000	Mustela_putorius_furo
ENSANAG00000027743	APOBEC1	92	70.742	ENSNGAG00000022607	Apobec1	100	70.742	Nannospalax_galili
ENSANAG00000027743	APOBEC1	95	89.407	ENSNLEG00000005342	APOBEC1	100	89.407	Nomascus_leucogenys
ENSANAG00000027743	APOBEC1	95	65.678	ENSMEUG00000013406	APOBEC1	100	65.678	Notamacropus_eugenii
ENSANAG00000027743	APOBEC1	73	64.088	ENSOPRG00000009508	-	100	64.088	Ochotona_princeps
ENSANAG00000027743	APOBEC1	96	74.790	ENSOCUG00000025736	APOBEC1	89	74.790	Oryctolagus_cuniculus
ENSANAG00000027743	APOBEC1	93	79.654	ENSOGAG00000026415	APOBEC1	98	79.654	Otolemur_garnettii
ENSANAG00000027743	APOBEC1	95	75.424	ENSOARG00000002072	APOBEC1	99	75.424	Ovis_aries
ENSANAG00000027743	APOBEC1	93	81.385	ENSPPAG00000027657	APOBEC1	98	81.385	Pan_paniscus
ENSANAG00000027743	APOBEC1	95	79.237	ENSPPRG00000012182	APOBEC1	100	79.237	Panthera_pardus
ENSANAG00000027743	APOBEC1	95	79.237	ENSPTIG00000020280	APOBEC1	100	79.237	Panthera_tigris_altaica
ENSANAG00000027743	APOBEC1	95	88.983	ENSPTRG00000004614	APOBEC1	100	88.983	Pan_troglodytes
ENSANAG00000027743	APOBEC1	95	90.678	ENSPANG00000021027	APOBEC1	100	90.678	Papio_anubis
ENSANAG00000027743	APOBEC1	54	48.624	ENSPSIG00000012791	-	75	48.624	Pelodiscus_sinensis
ENSANAG00000027743	APOBEC1	89	43.439	ENSPSIG00000012568	-	89	43.439	Pelodiscus_sinensis
ENSANAG00000027743	APOBEC1	92	68.559	ENSPEMG00000023841	Apobec1	100	68.559	Peromyscus_maniculatus_bairdii
ENSANAG00000027743	APOBEC1	95	68.644	ENSPCIG00000023973	APOBEC1	100	68.644	Phascolarctos_cinereus
ENSANAG00000027743	APOBEC1	100	89.113	ENSPPYG00000004228	APOBEC1	100	89.113	Pongo_abelii
ENSANAG00000027743	APOBEC1	75	81.283	ENSPCAG00000008733	APOBEC1	100	81.283	Procavia_capensis
ENSANAG00000027743	APOBEC1	90	80.180	ENSPCOG00000013957	APOBEC1	98	80.180	Propithecus_coquereli
ENSANAG00000027743	APOBEC1	95	64.407	ENSPVAG00000010709	APOBEC1	100	64.407	Pteropus_vampyrus
ENSANAG00000027743	APOBEC1	92	68.421	ENSRNOG00000015411	Apobec1	99	68.421	Rattus_norvegicus
ENSANAG00000027743	APOBEC1	95	90.254	ENSRBIG00000031161	APOBEC1	100	90.254	Rhinopithecus_bieti
ENSANAG00000027743	APOBEC1	95	89.831	ENSRROG00000033576	APOBEC1	99	91.053	Rhinopithecus_roxellana
ENSANAG00000027743	APOBEC1	70	94.220	ENSSBOG00000030587	APOBEC1	98	94.220	Saimiri_boliviensis_boliviensis
ENSANAG00000027743	APOBEC1	92	69.163	ENSSHAG00000008925	APOBEC1	99	69.163	Sarcophilus_harrisii
ENSANAG00000027743	APOBEC1	53	68.702	ENSSARG00000011972	-	99	68.702	Sorex_araneus
ENSANAG00000027743	APOBEC1	69	66.279	ENSSARG00000000032	-	100	66.279	Sorex_araneus
ENSANAG00000027743	APOBEC1	83	42.180	ENSSPUG00000009044	-	81	42.180	Sphenodon_punctatus
ENSANAG00000027743	APOBEC1	95	78.390	ENSSSCG00000000668	APOBEC1	100	78.390	Sus_scrofa
ENSANAG00000027743	APOBEC1	58	49.655	ENSTGUG00000013118	-	99	49.655	Taeniopygia_guttata
ENSANAG00000027743	APOBEC1	89	74.208	ENSTBEG00000010043	APOBEC1	94	74.208	Tupaia_belangeri
ENSANAG00000027743	APOBEC1	75	77.005	ENSTTRG00000014015	APOBEC1	100	77.005	Tursiops_truncatus
ENSANAG00000027743	APOBEC1	98	74.380	ENSUAMG00000011636	APOBEC1	99	74.380	Ursus_americanus
ENSANAG00000027743	APOBEC1	93	77.489	ENSUMAG00000016552	APOBEC1	95	77.489	Ursus_maritimus
ENSANAG00000027743	APOBEC1	95	76.271	ENSVPAG00000001343	APOBEC1	100	76.271	Vicugna_pacos
ENSANAG00000027743	APOBEC1	95	77.542	ENSVVUG00000010522	APOBEC1	100	77.542	Vulpes_vulpes