EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSANAG00000029013 (Gene tree)
Gene ID: 105706526
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Aotus_nancymaae
Status: putative
Strand: Plus strand
Length: 144750 bases
Position: chrKZ197741.1:11467356-11612105
Accession: 105706526
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSANAP00000022974	XRN_N	PF03159.18	3.3e-96	1	1
ENSANAP00000022956	XRN_N	PF03159.18	5.5e-96	1	1
ENSANAP00000022949	XRN_N	PF03159.18	5.6e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSANAT00000040877	XRN1-203	3423	-	ENSANAP00000022974	1140 (aa)	-	A0A2K5DPR7
ENSANAT00000040852	XRN1-201	5124	XM_021669568	ENSANAP00000022949	1707 (aa)	XP_021525243	A0A2K5DPN7
ENSANAT00000040859	XRN1-202	5085	XM_021669569	ENSANAP00000022956	1694 (aa)	XP_021525244	A0A2K5DPR6

Gene Model

Click here to download ENSANAG00000029013's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSANAG00000029013's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSANAG00000029013	XRN1	52	39.354	ENSANAG00000020126	XRN2	72	40.060

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSANAG00000029013	XRN1	100	96.458	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSANAG00000029013	XRN1	99	73.875	ENSAPOG00000000622	xrn1	100	70.285	Acanthochromis_polyacanthus
ENSANAG00000029013	XRN1	99	95.951	ENSAMEG00000012538	XRN1	100	91.354	Ailuropoda_melanoleuca
ENSANAG00000029013	XRN1	99	73.550	ENSACIG00000001057	xrn1	99	72.683	Amphilophus_citrinellus
ENSANAG00000029013	XRN1	99	73.763	ENSAOCG00000014097	xrn1	95	69.679	Amphiprion_ocellaris
ENSANAG00000029013	XRN1	99	73.698	ENSAPEG00000006620	xrn1	91	72.574	Amphiprion_percula
ENSANAG00000029013	XRN1	99	72.359	ENSATEG00000009752	xrn1	99	71.372	Anabas_testudineus
ENSANAG00000029013	XRN1	97	85.921	ENSAPLG00000004905	XRN1	100	75.900	Anas_platyrhynchos
ENSANAG00000029013	XRN1	99	84.303	ENSACAG00000004985	XRN1	100	72.691	Anolis_carolinensis
ENSANAG00000029013	XRN1	99	73.504	ENSACLG00000004806	xrn1	99	60.633	Astatotilapia_calliptera
ENSANAG00000029013	XRN1	99	72.046	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSANAG00000029013	XRN1	99	95.057	ENSBTAG00000011524	XRN1	100	91.974	Bos_taurus
ENSANAG00000029013	XRN1	99	39.823	WBGene00012730	xrn-1	83	38.541	Caenorhabditis_elegans
ENSANAG00000029013	XRN1	100	98.229	ENSCJAG00000001872	XRN1	100	98.229	Callithrix_jacchus
ENSANAG00000029013	XRN1	99	96.470	ENSCAFG00000007783	XRN1	100	92.970	Canis_familiaris
ENSANAG00000029013	XRN1	99	96.470	ENSCAFG00020009120	XRN1	99	93.987	Canis_lupus_dingo
ENSANAG00000029013	XRN1	99	95.234	ENSCHIG00000019192	XRN1	99	89.994	Capra_hircus
ENSANAG00000029013	XRN1	99	95.763	ENSTSYG00000002705	XRN1	100	93.569	Carlito_syrichta
ENSANAG00000029013	XRN1	82	76.617	ENSCAPG00000004604	-	99	76.617	Cavia_aperea
ENSANAG00000029013	XRN1	100	98.770	ENSCCAG00000034800	XRN1	100	98.770	Cebus_capucinus
ENSANAG00000029013	XRN1	100	96.812	ENSCATG00000041794	XRN1	100	96.812	Cercocebus_atys
ENSANAG00000029013	XRN1	99	94.969	ENSCLAG00000001451	XRN1	99	96.661	Chinchilla_lanigera
ENSANAG00000029013	XRN1	100	96.778	ENSCSAG00000011265	XRN1	100	96.778	Chlorocebus_sabaeus
ENSANAG00000029013	XRN1	58	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSANAG00000029013	XRN1	99	45.462	ENSCSAVG00000008584	-	98	44.505	Ciona_savignyi
ENSANAG00000029013	XRN1	100	96.694	ENSCANG00000037495	XRN1	99	98.887	Colobus_angolensis_palliatus
ENSANAG00000029013	XRN1	99	94.616	ENSCGRG00001019411	Xrn1	99	96.343	Cricetulus_griseus_chok1gshd
ENSANAG00000029013	XRN1	99	94.616	ENSCGRG00000012464	Xrn1	99	96.343	Cricetulus_griseus_crigri
ENSANAG00000029013	XRN1	98	70.347	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSANAG00000029013	XRN1	99	68.486	ENSCVAG00000013089	xrn1	99	72.615	Cyprinodon_variegatus
ENSANAG00000029013	XRN1	99	75.397	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSANAG00000029013	XRN1	99	94.004	ENSDORG00000013833	Xrn1	100	86.806	Dipodomys_ordii
ENSANAG00000029013	XRN1	99	42.443	FBgn0020261	pcm	76	40.077	Drosophila_melanogaster
ENSANAG00000029013	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSANAG00000029013	XRN1	99	95.057	ENSEASG00005002687	XRN1	99	96.502	Equus_asinus_asinus
ENSANAG00000029013	XRN1	99	95.146	ENSECAG00000008301	XRN1	100	92.443	Equus_caballus
ENSANAG00000029013	XRN1	92	83.187	ENSEEUG00000011323	XRN1	92	83.187	Erinaceus_europaeus
ENSANAG00000029013	XRN1	99	74.492	ENSELUG00000000169	xrn1	100	61.796	Esox_lucius
ENSANAG00000029013	XRN1	100	89.110	ENSFCAG00000027589	XRN1	99	96.264	Felis_catus
ENSANAG00000029013	XRN1	99	86.042	ENSFALG00000007021	XRN1	100	74.396	Ficedula_albicollis
ENSANAG00000029013	XRN1	99	94.616	ENSFDAG00000020494	XRN1	99	96.184	Fukomys_damarensis
ENSANAG00000029013	XRN1	99	69.700	ENSGMOG00000006396	xrn1	83	68.368	Gadus_morhua
ENSANAG00000029013	XRN1	99	86.496	ENSGALG00000002706	XRN1	100	74.845	Gallus_gallus
ENSANAG00000029013	XRN1	99	71.730	ENSGACG00000014328	xrn1	100	60.354	Gasterosteus_aculeatus
ENSANAG00000029013	XRN1	99	85.979	ENSGAGG00000017535	XRN1	99	77.697	Gopherus_agassizii
ENSANAG00000029013	XRN1	100	96.635	ENSGGOG00000008047	XRN1	100	96.635	Gorilla_gorilla
ENSANAG00000029013	XRN1	99	72.296	ENSHBUG00000005908	xrn1	98	73.511	Haplochromis_burtoni
ENSANAG00000029013	XRN1	99	95.675	ENSHGLG00000014476	XRN1	99	97.138	Heterocephalus_glaber_female
ENSANAG00000029013	XRN1	99	95.675	ENSHGLG00100015130	XRN1	99	97.138	Heterocephalus_glaber_male
ENSANAG00000029013	XRN1	99	73.013	ENSHCOG00000014062	xrn1	95	70.234	Hippocampus_comes
ENSANAG00000029013	XRN1	99	74.846	ENSIPUG00000015229	xrn1	96	63.827	Ictalurus_punctatus
ENSANAG00000029013	XRN1	99	96.734	ENSSTOG00000013552	XRN1	99	97.933	Ictidomys_tridecemlineatus
ENSANAG00000029013	XRN1	97	93.767	ENSJJAG00000010863	Xrn1	99	94.032	Jaculus_jaculus
ENSANAG00000029013	XRN1	99	71.315	ENSKMAG00000021356	xrn1	94	76.211	Kryptolebias_marmoratus
ENSANAG00000029013	XRN1	99	72.703	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSANAG00000029013	XRN1	99	80.688	ENSLACG00000009020	XRN1	100	69.113	Latimeria_chalumnae
ENSANAG00000029013	XRN1	99	78.238	ENSLOCG00000007944	xrn1	98	66.256	Lepisosteus_oculatus
ENSANAG00000029013	XRN1	94	95.416	ENSLAFG00000015426	XRN1	100	96.258	Loxodonta_africana
ENSANAG00000029013	XRN1	100	96.812	ENSMFAG00000032599	XRN1	100	96.812	Macaca_fascicularis
ENSANAG00000029013	XRN1	100	96.871	ENSMMUG00000014038	XRN1	100	96.871	Macaca_mulatta
ENSANAG00000029013	XRN1	100	96.694	ENSMNEG00000034217	XRN1	100	96.694	Macaca_nemestrina
ENSANAG00000029013	XRN1	99	73.527	ENSMAMG00000013219	xrn1	94	75.460	Mastacembelus_armatus
ENSANAG00000029013	XRN1	99	73.023	ENSMZEG00005015099	xrn1	99	60.520	Maylandia_zebra
ENSANAG00000029013	XRN1	97	84.234	ENSMGAG00000006333	XRN1	100	74.767	Meleagris_gallopavo
ENSANAG00000029013	XRN1	99	95.852	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSANAG00000029013	XRN1	86	95.231	ENSMOCG00000008665	Xrn1	99	95.231	Microtus_ochrogaster
ENSANAG00000029013	XRN1	99	88.967	ENSMODG00000021236	XRN1	100	82.205	Monodelphis_domestica
ENSANAG00000029013	XRN1	99	69.251	ENSMALG00000004098	xrn1	100	57.382	Monopterus_albus
ENSANAG00000029013	XRN1	96	95.103	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSANAG00000029013	XRN1	99	93.733	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSANAG00000029013	XRN1	99	94.086	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSANAG00000029013	XRN1	99	93.905	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSANAG00000029013	XRN1	99	96.117	ENSMPUG00000012040	XRN1	100	93.263	Mustela_putorius_furo
ENSANAG00000029013	XRN1	99	94.616	ENSMLUG00000016885	XRN1	100	89.030	Myotis_lucifugus
ENSANAG00000029013	XRN1	86	91.892	ENSNGAG00000023964	Xrn1	99	91.892	Nannospalax_galili
ENSANAG00000029013	XRN1	100	96.812	ENSNLEG00000004726	XRN1	100	96.812	Nomascus_leucogenys
ENSANAG00000029013	XRN1	80	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSANAG00000029013	XRN1	74	95.652	ENSOPRG00000007337	-	78	84.800	Ochotona_princeps
ENSANAG00000029013	XRN1	99	73.175	ENSONIG00000016673	xrn1	99	64.702	Oreochromis_niloticus
ENSANAG00000029013	XRN1	87	87.375	ENSOANG00000006735	XRN1	100	77.953	Ornithorhynchus_anatinus
ENSANAG00000029013	XRN1	99	95.940	ENSOCUG00000001861	XRN1	100	90.086	Oryctolagus_cuniculus
ENSANAG00000029013	XRN1	99	73.730	ENSORLG00000013005	xrn1	100	60.585	Oryzias_latipes
ENSANAG00000029013	XRN1	99	74.074	ENSORLG00020005559	xrn1	100	61.778	Oryzias_latipes_hni
ENSANAG00000029013	XRN1	99	73.898	ENSORLG00015022523	xrn1	100	60.966	Oryzias_latipes_hsok
ENSANAG00000029013	XRN1	99	74.009	ENSOMEG00000015397	xrn1	99	73.187	Oryzias_melastigma
ENSANAG00000029013	XRN1	99	92.851	ENSOGAG00000000170	XRN1	100	91.042	Otolemur_garnettii
ENSANAG00000029013	XRN1	99	95.322	ENSOARG00000006343	XRN1	99	92.493	Ovis_aries
ENSANAG00000029013	XRN1	100	96.517	ENSPPAG00000010180	XRN1	100	96.517	Pan_paniscus
ENSANAG00000029013	XRN1	99	96.296	ENSPPRG00000007125	XRN1	100	93.392	Panthera_pardus
ENSANAG00000029013	XRN1	99	96.296	ENSPTIG00000021081	XRN1	100	93.451	Panthera_tigris_altaica
ENSANAG00000029013	XRN1	100	96.399	ENSPTRG00000015482	XRN1	100	96.399	Pan_troglodytes
ENSANAG00000029013	XRN1	100	96.753	ENSPANG00000010638	XRN1	100	96.753	Papio_anubis
ENSANAG00000029013	XRN1	99	86.280	ENSPSIG00000018050	XRN1	100	76.927	Pelodiscus_sinensis
ENSANAG00000029013	XRN1	85	77.708	ENSPMGG00000002648	xrn1	98	78.964	Periophthalmus_magnuspinnatus
ENSANAG00000029013	XRN1	86	96.184	ENSPEMG00000020610	Xrn1	99	96.184	Peromyscus_maniculatus_bairdii
ENSANAG00000029013	XRN1	97	52.832	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSANAG00000029013	XRN1	99	88.958	ENSPCIG00000028735	XRN1	99	89.762	Phascolarctos_cinereus
ENSANAG00000029013	XRN1	99	73.310	ENSPFOG00000013932	xrn1	99	65.080	Poecilia_formosa
ENSANAG00000029013	XRN1	99	73.175	ENSPLAG00000021653	xrn1	99	64.331	Poecilia_latipinna
ENSANAG00000029013	XRN1	99	73.592	ENSPMEG00000003076	xrn1	95	64.867	Poecilia_mexicana
ENSANAG00000029013	XRN1	99	72.743	ENSPREG00000021147	xrn1	100	61.292	Poecilia_reticulata
ENSANAG00000029013	XRN1	100	96.426	ENSPPYG00000014172	XRN1	100	96.426	Pongo_abelii
ENSANAG00000029013	XRN1	97	88.517	ENSPCAG00000005638	XRN1	99	82.025	Procavia_capensis
ENSANAG00000029013	XRN1	100	95.797	ENSPCOG00000013089	XRN1	99	97.297	Propithecus_coquereli
ENSANAG00000029013	XRN1	99	91.101	ENSPVAG00000016265	XRN1	96	92.114	Pteropus_vampyrus
ENSANAG00000029013	XRN1	99	73.550	ENSPNYG00000010570	xrn1	99	61.191	Pundamilia_nyererei
ENSANAG00000029013	XRN1	99	71.743	ENSPNAG00000023531	xrn1	97	61.401	Pygocentrus_nattereri
ENSANAG00000029013	XRN1	99	93.645	ENSRNOG00000042951	Xrn1	100	87.291	Rattus_norvegicus
ENSANAG00000029013	XRN1	99	97.352	ENSRBIG00000041227	XRN1	100	96.134	Rhinopithecus_bieti
ENSANAG00000029013	XRN1	95	54.496	YGL173C	XRN1	81	34.591	Saccharomyces_cerevisiae
ENSANAG00000029013	XRN1	100	98.229	ENSSBOG00000029561	XRN1	100	98.229	Saimiri_boliviensis_boliviensis
ENSANAG00000029013	XRN1	97	88.899	ENSSHAG00000016207	XRN1	100	81.468	Sarcophilus_harrisii
ENSANAG00000029013	XRN1	99	73.940	ENSSFOG00015024211	xrn1	97	62.981	Scleropages_formosus
ENSANAG00000029013	XRN1	99	74.230	ENSSMAG00000016534	xrn1	95	72.456	Scophthalmus_maximus
ENSANAG00000029013	XRN1	99	73.633	ENSSDUG00000010306	xrn1	97	72.417	Seriola_dumerili
ENSANAG00000029013	XRN1	99	73.744	ENSSLDG00000021543	xrn1	100	71.895	Seriola_lalandi_dorsalis
ENSANAG00000029013	XRN1	85	85.124	ENSSARG00000007741	-	83	85.227	Sorex_araneus
ENSANAG00000029013	XRN1	99	85.777	ENSTGUG00000008498	XRN1	100	76.553	Taeniopygia_guttata
ENSANAG00000029013	XRN1	99	71.781	ENSTRUG00000004895	xrn1	96	75.574	Takifugu_rubripes
ENSANAG00000029013	XRN1	99	70.166	ENSTNIG00000017615	xrn1	100	59.007	Tetraodon_nigroviridis
ENSANAG00000029013	XRN1	84	97.844	ENSTBEG00000003256	XRN1	89	87.560	Tupaia_belangeri
ENSANAG00000029013	XRN1	99	92.586	ENSTTRG00000012914	XRN1	100	88.459	Tursiops_truncatus
ENSANAG00000029013	XRN1	99	93.469	ENSUAMG00000001608	XRN1	100	92.330	Ursus_americanus
ENSANAG00000029013	XRN1	99	96.293	ENSUMAG00000013625	XRN1	100	94.204	Ursus_maritimus
ENSANAG00000029013	XRN1	99	91.512	ENSVPAG00000004690	XRN1	100	90.217	Vicugna_pacos
ENSANAG00000029013	XRN1	99	96.470	ENSVVUG00000024461	XRN1	99	97.456	Vulpes_vulpes
ENSANAG00000029013	XRN1	99	80.071	ENSXETG00000000619	xrn1	99	88.802	Xenopus_tropicalis
ENSANAG00000029013	XRN1	99	73.522	ENSXCOG00000007917	xrn1	100	60.764	Xiphophorus_couchianus
ENSANAG00000029013	XRN1	99	72.751	ENSXMAG00000018320	xrn1	98	72.209	Xiphophorus_maculatus