EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSANAG00000035760 (Gene tree)
Gene ID: 105714376
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Aotus_nancymaae
Status: putative
Strand: Minus strand
Length: 241657 bases
Position: chrKZ199789.1:2526583-2768239
Accession: 105714376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSANAP00000036590	EST1	PF10374.9	5.2e-15	1	1
ENSANAP00000036593	EST1_DNA_bind	PF10373.9	4.8e-60	1	1
ENSANAP00000036590	EST1_DNA_bind	PF10373.9	4.9e-60	1	1
ENSANAP00000036593	PIN_4	PF13638.6	3.5e-21	1	1
ENSANAP00000036590	PIN_4	PF13638.6	3.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSANAT00000054664	SMG6-201	6629	XM_012448331	ENSANAP00000036590	1419 (aa)	XP_012303754	A0A2K5ETS0
ENSANAT00000054667	SMG6-202	6518	XM_012448334	ENSANAP00000036593	1382 (aa)	XP_012303757	A0A2K5ETW5

Gene Model

Click here to download ENSANAG00000035760's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSANAG00000035760's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSANAG00000035760	SMG6	100	95.278	ENSG00000070366	SMG6	100	98.780	Homo_sapiens
ENSANAG00000035760	SMG6	83	55.129	ENSAPOG00000019448	smg6	74	55.019	Acanthochromis_polyacanthus
ENSANAG00000035760	SMG6	100	93.164	ENSAMEG00000007632	SMG6	100	93.164	Ailuropoda_melanoleuca
ENSANAG00000035760	SMG6	98	49.573	ENSACIG00000012997	smg6	98	49.607	Amphilophus_citrinellus
ENSANAG00000035760	SMG6	71	59.670	ENSAOCG00000002630	smg6	74	55.121	Amphiprion_ocellaris
ENSANAG00000035760	SMG6	71	59.762	ENSAPEG00000019101	smg6	74	55.156	Amphiprion_percula
ENSANAG00000035760	SMG6	83	55.199	ENSATEG00000006483	smg6	73	55.286	Anabas_testudineus
ENSANAG00000035760	SMG6	87	57.334	ENSACAG00000011783	SMG6	99	58.583	Anolis_carolinensis
ENSANAG00000035760	SMG6	71	59.447	ENSACLG00000005288	smg6	80	55.183	Astatotilapia_calliptera
ENSANAG00000035760	SMG6	68	62.866	ENSAMXG00000017326	smg6	99	50.312	Astyanax_mexicanus
ENSANAG00000035760	SMG6	100	92.741	ENSBTAG00000000267	SMG6	100	92.741	Bos_taurus
ENSANAG00000035760	SMG6	100	97.322	ENSCJAG00000001820	SMG6	100	97.322	Callithrix_jacchus
ENSANAG00000035760	SMG6	100	92.812	ENSCAFG00000019260	SMG6	100	92.812	Canis_familiaris
ENSANAG00000035760	SMG6	100	92.812	ENSCAFG00020009770	SMG6	100	92.812	Canis_lupus_dingo
ENSANAG00000035760	SMG6	100	92.600	ENSCHIG00000021998	SMG6	100	92.600	Capra_hircus
ENSANAG00000035760	SMG6	100	93.798	ENSTSYG00000003406	SMG6	100	97.260	Carlito_syrichta
ENSANAG00000035760	SMG6	98	77.050	ENSCAPG00000016197	SMG6	99	82.436	Cavia_aperea
ENSANAG00000035760	SMG6	100	90.704	ENSCPOG00000014878	SMG6	100	90.704	Cavia_porcellus
ENSANAG00000035760	SMG6	100	98.168	ENSCCAG00000035801	SMG6	100	98.168	Cebus_capucinus
ENSANAG00000035760	SMG6	100	95.772	ENSCATG00000031956	SMG6	100	95.772	Cercocebus_atys
ENSANAG00000035760	SMG6	100	92.319	ENSCLAG00000006748	SMG6	100	92.319	Chinchilla_lanigera
ENSANAG00000035760	SMG6	100	96.124	ENSCSAG00000013800	SMG6	100	96.124	Chlorocebus_sabaeus
ENSANAG00000035760	SMG6	57	97.015	ENSCHOG00000005024	-	73	97.015	Choloepus_hoffmanni
ENSANAG00000035760	SMG6	100	72.399	ENSCPBG00000020369	SMG6	100	73.024	Chrysemys_picta_bellii
ENSANAG00000035760	SMG6	98	95.896	ENSCANG00000031764	SMG6	100	98.239	Colobus_angolensis_palliatus
ENSANAG00000035760	SMG6	55	86.829	ENSCGRG00001019595	Smg6	98	86.829	Cricetulus_griseus_chok1gshd
ENSANAG00000035760	SMG6	98	84.294	ENSCGRG00000007782	Smg6	100	84.438	Cricetulus_griseus_crigri
ENSANAG00000035760	SMG6	86	52.941	ENSCSEG00000012757	smg6	81	53.615	Cynoglossus_semilaevis
ENSANAG00000035760	SMG6	72	57.557	ENSCVAG00000012789	smg6	74	53.510	Cyprinodon_variegatus
ENSANAG00000035760	SMG6	100	49.601	ENSDARG00000100481	smg6	100	50.267	Danio_rerio
ENSANAG00000035760	SMG6	100	92.530	ENSDNOG00000048283	SMG6	100	92.530	Dasypus_novemcinctus
ENSANAG00000035760	SMG6	100	88.772	ENSDORG00000016614	Smg6	94	98.198	Dipodomys_ordii
ENSANAG00000035760	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSANAG00000035760	SMG6	73	49.903	ENSEBUG00000005059	smg6	73	48.790	Eptatretus_burgeri
ENSANAG00000035760	SMG6	99	93.790	ENSEASG00005009318	SMG6	99	93.790	Equus_asinus_asinus
ENSANAG00000035760	SMG6	99	93.507	ENSECAG00000006519	SMG6	99	93.507	Equus_caballus
ENSANAG00000035760	SMG6	96	87.031	ENSEEUG00000003493	SMG6	100	82.311	Erinaceus_europaeus
ENSANAG00000035760	SMG6	71	60.556	ENSELUG00000005934	smg6	69	55.666	Esox_lucius
ENSANAG00000035760	SMG6	100	93.939	ENSFCAG00000028817	SMG6	100	93.939	Felis_catus
ENSANAG00000035760	SMG6	98	71.886	ENSFALG00000006538	SMG6	100	72.028	Ficedula_albicollis
ENSANAG00000035760	SMG6	100	91.755	ENSFDAG00000015106	SMG6	100	91.755	Fukomys_damarensis
ENSANAG00000035760	SMG6	83	52.767	ENSFHEG00000013282	smg6	75	53.162	Fundulus_heteroclitus
ENSANAG00000035760	SMG6	53	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSANAG00000035760	SMG6	100	71.964	ENSGALG00000003108	SMG6	98	72.033	Gallus_gallus
ENSANAG00000035760	SMG6	83	53.997	ENSGAFG00000000379	smg6	74	54.496	Gambusia_affinis
ENSANAG00000035760	SMG6	91	54.498	ENSGACG00000020521	smg6	100	54.201	Gasterosteus_aculeatus
ENSANAG00000035760	SMG6	98	72.037	ENSGAGG00000025617	SMG6	100	72.676	Gopherus_agassizii
ENSANAG00000035760	SMG6	100	96.335	ENSGGOG00000017156	SMG6	100	96.335	Gorilla_gorilla
ENSANAG00000035760	SMG6	83	54.545	ENSHBUG00000021311	smg6	74	55.469	Haplochromis_burtoni
ENSANAG00000035760	SMG6	100	91.696	ENSHGLG00000012882	SMG6	100	91.696	Heterocephalus_glaber_female
ENSANAG00000035760	SMG6	100	91.766	ENSHGLG00100017815	SMG6	100	91.766	Heterocephalus_glaber_male
ENSANAG00000035760	SMG6	71	59.065	ENSHCOG00000008761	smg6	91	55.903	Hippocampus_comes
ENSANAG00000035760	SMG6	83	55.110	ENSIPUG00000012493	smg6	75	54.503	Ictalurus_punctatus
ENSANAG00000035760	SMG6	100	93.869	ENSSTOG00000028127	SMG6	100	93.869	Ictidomys_tridecemlineatus
ENSANAG00000035760	SMG6	79	88.046	ENSJJAG00000015367	Smg6	95	86.135	Jaculus_jaculus
ENSANAG00000035760	SMG6	73	59.316	ENSKMAG00000000279	smg6	76	54.141	Kryptolebias_marmoratus
ENSANAG00000035760	SMG6	86	52.941	ENSLBEG00000002184	smg6	76	53.184	Labrus_bergylta
ENSANAG00000035760	SMG6	55	58.608	ENSLACG00000000806	-	98	58.852	Latimeria_chalumnae
ENSANAG00000035760	SMG6	73	65.414	ENSLOCG00000006448	smg6	99	54.959	Lepisosteus_oculatus
ENSANAG00000035760	SMG6	100	92.812	ENSLAFG00000001261	SMG6	100	92.812	Loxodonta_africana
ENSANAG00000035760	SMG6	100	96.054	ENSMFAG00000003394	SMG6	100	96.054	Macaca_fascicularis
ENSANAG00000035760	SMG6	100	95.983	ENSMMUG00000023161	SMG6	100	95.983	Macaca_mulatta
ENSANAG00000035760	SMG6	100	91.145	ENSMNEG00000044592	SMG6	100	91.145	Macaca_nemestrina
ENSANAG00000035760	SMG6	98	93.511	ENSMLEG00000029353	SMG6	100	98.308	Mandrillus_leucophaeus
ENSANAG00000035760	SMG6	83	56.607	ENSMAMG00000020119	smg6	98	49.904	Mastacembelus_armatus
ENSANAG00000035760	SMG6	71	59.447	ENSMZEG00005024736	smg6	74	55.226	Maylandia_zebra
ENSANAG00000035760	SMG6	73	66.225	ENSMGAG00000005401	-	99	66.225	Meleagris_gallopavo
ENSANAG00000035760	SMG6	100	94.856	ENSMICG00000012913	SMG6	100	94.856	Microcebus_murinus
ENSANAG00000035760	SMG6	100	47.604	ENSMMOG00000010883	smg6	100	48.065	Mola_mola
ENSANAG00000035760	SMG6	100	85.513	ENSMODG00000010622	SMG6	100	85.513	Monodelphis_domestica
ENSANAG00000035760	SMG6	83	54.779	ENSMALG00000001106	smg6	73	54.826	Monopterus_albus
ENSANAG00000035760	SMG6	100	91.050	MGP_CAROLIEiJ_G0016729	Smg6	100	91.050	Mus_caroli
ENSANAG00000035760	SMG6	100	91.050	ENSMUSG00000038290	Smg6	100	91.050	Mus_musculus
ENSANAG00000035760	SMG6	100	90.416	MGP_PahariEiJ_G0017866	Smg6	100	90.416	Mus_pahari
ENSANAG00000035760	SMG6	100	90.980	MGP_SPRETEiJ_G0017572	Smg6	100	90.980	Mus_spretus
ENSANAG00000035760	SMG6	100	93.094	ENSMPUG00000013046	SMG6	100	93.094	Mustela_putorius_furo
ENSANAG00000035760	SMG6	100	93.164	ENSMLUG00000005739	SMG6	100	93.164	Myotis_lucifugus
ENSANAG00000035760	SMG6	98	90.065	ENSNGAG00000007287	Smg6	100	90.065	Nannospalax_galili
ENSANAG00000035760	SMG6	83	53.763	ENSNBRG00000009511	smg6	81	54.738	Neolamprologus_brichardi
ENSANAG00000035760	SMG6	98	95.552	ENSNLEG00000017171	SMG6	100	98.434	Nomascus_leucogenys
ENSANAG00000035760	SMG6	98	81.537	ENSMEUG00000015804	SMG6	100	81.537	Notamacropus_eugenii
ENSANAG00000035760	SMG6	64	90.000	ENSOPRG00000000579	SMG6	84	96.842	Ochotona_princeps
ENSANAG00000035760	SMG6	100	87.283	ENSODEG00000008038	SMG6	100	87.283	Octodon_degus
ENSANAG00000035760	SMG6	100	51.237	ENSONIG00000005594	smg6	100	52.000	Oreochromis_niloticus
ENSANAG00000035760	SMG6	100	92.681	ENSOCUG00000013018	SMG6	100	92.892	Oryctolagus_cuniculus
ENSANAG00000035760	SMG6	89	51.803	ENSORLG00000003317	smg6	79	52.419	Oryzias_latipes
ENSANAG00000035760	SMG6	89	52.027	ENSORLG00020015343	smg6	79	52.798	Oryzias_latipes_hni
ENSANAG00000035760	SMG6	89	51.912	ENSORLG00015020454	smg6	79	53.049	Oryzias_latipes_hsok
ENSANAG00000035760	SMG6	83	53.774	ENSOMEG00000010838	smg6	75	54.167	Oryzias_melastigma
ENSANAG00000035760	SMG6	100	93.873	ENSOGAG00000004483	SMG6	100	93.873	Otolemur_garnettii
ENSANAG00000035760	SMG6	100	90.845	ENSOARG00000015076	SMG6	100	92.419	Ovis_aries
ENSANAG00000035760	SMG6	100	96.265	ENSPPAG00000043296	SMG6	100	96.265	Pan_paniscus
ENSANAG00000035760	SMG6	100	93.939	ENSPPRG00000014581	SMG6	100	93.939	Panthera_pardus
ENSANAG00000035760	SMG6	98	94.007	ENSPTIG00000008925	SMG6	100	97.847	Panthera_tigris_altaica
ENSANAG00000035760	SMG6	100	96.124	ENSPTRG00000008544	SMG6	100	98.434	Pan_troglodytes
ENSANAG00000035760	SMG6	100	95.983	ENSPANG00000024588	SMG6	100	95.983	Papio_anubis
ENSANAG00000035760	SMG6	89	70.625	ENSPSIG00000006660	SMG6	96	70.703	Pelodiscus_sinensis
ENSANAG00000035760	SMG6	100	49.967	ENSPMGG00000000844	smg6	100	60.614	Periophthalmus_magnuspinnatus
ENSANAG00000035760	SMG6	100	91.896	ENSPEMG00000020707	Smg6	100	91.896	Peromyscus_maniculatus_bairdii
ENSANAG00000035760	SMG6	100	51.442	ENSPFOG00000012035	smg6	100	51.342	Poecilia_formosa
ENSANAG00000035760	SMG6	76	56.775	ENSPLAG00000017660	smg6	74	54.160	Poecilia_latipinna
ENSANAG00000035760	SMG6	76	56.801	ENSPMEG00000000258	smg6	74	54.474	Poecilia_mexicana
ENSANAG00000035760	SMG6	83	54.275	ENSPREG00000010066	smg6	74	54.183	Poecilia_reticulata
ENSANAG00000035760	SMG6	100	90.858	ENSPPYG00000007790	SMG6	100	90.858	Pongo_abelii
ENSANAG00000035760	SMG6	100	88.443	ENSPCAG00000000552	SMG6	100	88.443	Procavia_capensis
ENSANAG00000035760	SMG6	100	94.574	ENSPCOG00000020925	SMG6	100	94.574	Propithecus_coquereli
ENSANAG00000035760	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSANAG00000035760	SMG6	83	56.479	ENSPNYG00000024151	smg6	79	57.316	Pundamilia_nyererei
ENSANAG00000035760	SMG6	85	51.700	ENSPNAG00000015480	smg6	100	47.664	Pygocentrus_nattereri
ENSANAG00000035760	SMG6	100	91.261	ENSRNOG00000003041	Smg6	100	91.261	Rattus_norvegicus
ENSANAG00000035760	SMG6	100	96.054	ENSRBIG00000024746	SMG6	100	96.054	Rhinopithecus_bieti
ENSANAG00000035760	SMG6	100	96.124	ENSRROG00000030423	SMG6	100	97.847	Rhinopithecus_roxellana
ENSANAG00000035760	SMG6	100	98.263	ENSSBOG00000022518	SMG6	100	96.476	Saimiri_boliviensis_boliviensis
ENSANAG00000035760	SMG6	98	84.577	ENSSHAG00000010045	SMG6	98	84.577	Sarcophilus_harrisii
ENSANAG00000035760	SMG6	72	62.419	ENSSFOG00015005436	smg6	75	54.685	Scleropages_formosus
ENSANAG00000035760	SMG6	83	55.469	ENSSMAG00000019777	smg6	73	54.942	Scophthalmus_maximus
ENSANAG00000035760	SMG6	83	55.269	ENSSDUG00000016412	smg6	74	55.226	Seriola_dumerili
ENSANAG00000035760	SMG6	80	54.281	ENSSLDG00000020747	smg6	77	54.157	Seriola_lalandi_dorsalis
ENSANAG00000035760	SMG6	99	69.944	ENSSPUG00000007152	SMG6	99	69.944	Sphenodon_punctatus
ENSANAG00000035760	SMG6	71	59.174	ENSSPAG00000015633	smg6	74	54.609	Stegastes_partitus
ENSANAG00000035760	SMG6	100	92.254	ENSSSCG00000017826	SMG6	100	92.254	Sus_scrofa
ENSANAG00000035760	SMG6	100	72.230	ENSTGUG00000005836	SMG6	100	72.440	Taeniopygia_guttata
ENSANAG00000035760	SMG6	83	54.589	ENSTRUG00000000358	smg6	81	55.529	Takifugu_rubripes
ENSANAG00000035760	SMG6	100	49.768	ENSTNIG00000016164	smg6	100	50.099	Tetraodon_nigroviridis
ENSANAG00000035760	SMG6	100	89.500	ENSTBEG00000011424	SMG6	100	89.500	Tupaia_belangeri
ENSANAG00000035760	SMG6	93	91.364	ENSTTRG00000001175	SMG6	91	91.364	Tursiops_truncatus
ENSANAG00000035760	SMG6	100	93.319	ENSUAMG00000025152	SMG6	100	93.300	Ursus_americanus
ENSANAG00000035760	SMG6	98	93.502	ENSUMAG00000009306	SMG6	100	93.502	Ursus_maritimus
ENSANAG00000035760	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSANAG00000035760	SMG6	100	92.741	ENSVVUG00000021727	SMG6	100	92.741	Vulpes_vulpes
ENSANAG00000035760	SMG6	98	59.267	ENSXETG00000023799	SMG6	100	59.046	Xenopus_tropicalis
ENSANAG00000035760	SMG6	72	60.167	ENSXCOG00000009867	smg6	74	55.378	Xiphophorus_couchianus
ENSANAG00000035760	SMG6	83	54.617	ENSXMAG00000010321	smg6	74	54.524	Xiphophorus_maculatus