EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000001077 (Gene tree)
Gene ID: 111569287
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 7836 bases
Position: chrNXFZ01002328.1:57858-65693
Accession: 111569287
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000027001	LSM	PF01423.22	1.2e-20	1	1
ENSAOCP00000011290	LSM	PF01423.22	2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000018649	-	871	XM_023271319	ENSAOCP00000027001	110 (aa)	XP_023127087	-
ENSAOCT00000030184	-	399	-	ENSAOCP00000011290	132 (aa)	-	-

Gene Model

Click here to download ENSAOCG00000001077's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000001077's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000001077	lsm7	65	38.028	ENSAOCG00000006447	snrpg	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000001077	lsm7	92	95.050	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSAOCG00000001077	lsm7	86	98.947	ENSAPOG00000015573	lsm7	81	100.000	Acanthochromis_polyacanthus
ENSAOCG00000001077	lsm7	93	93.137	ENSAMEG00000005484	LSM7	99	93.137	Ailuropoda_melanoleuca
ENSAOCG00000001077	lsm7	88	98.969	ENSACIG00000006498	lsm7	77	98.969	Amphilophus_citrinellus
ENSAOCG00000001077	lsm7	95	98.077	ENSAPEG00000000694	lsm7	99	99.020	Amphiprion_percula
ENSAOCG00000001077	lsm7	100	100.000	ENSAPEG00000024447	lsm7	100	100.000	Amphiprion_percula
ENSAOCG00000001077	lsm7	92	100.000	ENSATEG00000008557	lsm7	99	99.020	Anabas_testudineus
ENSAOCG00000001077	lsm7	92	95.050	ENSANAG00000037196	-	98	95.050	Aotus_nancymaae
ENSAOCG00000001077	lsm7	92	86.139	ENSANAG00000022222	-	98	86.139	Aotus_nancymaae
ENSAOCG00000001077	lsm7	92	99.010	ENSACLG00000021021	lsm7	99	98.039	Astatotilapia_calliptera
ENSAOCG00000001077	lsm7	92	98.020	ENSAMXG00000037622	lsm7	99	97.059	Astyanax_mexicanus
ENSAOCG00000001077	lsm7	92	95.050	ENSBTAG00000004521	LSM7	98	95.050	Bos_taurus
ENSAOCG00000001077	lsm7	92	57.426	WBGene00003081	lsm-7	88	57.609	Caenorhabditis_elegans
ENSAOCG00000001077	lsm7	63	76.812	ENSCJAG00000039713	-	66	94.444	Callithrix_jacchus
ENSAOCG00000001077	lsm7	94	93.204	ENSCAFG00000019409	LSM7	100	93.204	Canis_familiaris
ENSAOCG00000001077	lsm7	94	93.204	ENSCAFG00020018168	LSM7	74	95.000	Canis_lupus_dingo
ENSAOCG00000001077	lsm7	93	94.118	ENSCHIG00000023663	LSM7	99	94.118	Capra_hircus
ENSAOCG00000001077	lsm7	65	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSAOCG00000001077	lsm7	92	95.050	ENSCPOG00000014025	LSM7	100	95.050	Cavia_porcellus
ENSAOCG00000001077	lsm7	92	95.050	ENSCCAG00000035456	LSM7	99	95.050	Cebus_capucinus
ENSAOCG00000001077	lsm7	92	95.050	ENSCATG00000023543	LSM7	98	95.050	Cercocebus_atys
ENSAOCG00000001077	lsm7	92	95.050	ENSCLAG00000011635	LSM7	98	95.050	Chinchilla_lanigera
ENSAOCG00000001077	lsm7	92	95.050	ENSCSAG00000011599	LSM7	98	95.050	Chlorocebus_sabaeus
ENSAOCG00000001077	lsm7	65	95.833	ENSCPBG00000021317	LSM7	76	97.183	Chrysemys_picta_bellii
ENSAOCG00000001077	lsm7	87	80.208	ENSCING00000022134	-	91	81.111	Ciona_intestinalis
ENSAOCG00000001077	lsm7	92	95.050	ENSCANG00000035525	LSM7	98	95.050	Colobus_angolensis_palliatus
ENSAOCG00000001077	lsm7	82	84.444	ENSCGRG00001016005	-	92	84.444	Cricetulus_griseus_chok1gshd
ENSAOCG00000001077	lsm7	92	94.059	ENSCGRG00001000807	-	98	94.059	Cricetulus_griseus_chok1gshd
ENSAOCG00000001077	lsm7	82	84.444	ENSCGRG00000006821	-	92	84.444	Cricetulus_griseus_crigri
ENSAOCG00000001077	lsm7	93	93.137	ENSCGRG00000014355	-	98	93.137	Cricetulus_griseus_crigri
ENSAOCG00000001077	lsm7	95	97.143	ENSCSEG00000014900	lsm7	87	99.029	Cynoglossus_semilaevis
ENSAOCG00000001077	lsm7	93	98.039	ENSCVAG00000021091	lsm7	94	98.039	Cyprinodon_variegatus
ENSAOCG00000001077	lsm7	92	97.030	ENSDARG00000058328	lsm7	99	96.078	Danio_rerio
ENSAOCG00000001077	lsm7	92	93.069	ENSDORG00000024460	Lsm7	99	93.069	Dipodomys_ordii
ENSAOCG00000001077	lsm7	88	73.469	FBgn0261068	LSm7	83	73.626	Drosophila_melanogaster
ENSAOCG00000001077	lsm7	93	91.176	ENSETEG00000012788	LSM7	100	91.176	Echinops_telfairi
ENSAOCG00000001077	lsm7	75	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSAOCG00000001077	lsm7	93	83.333	ENSEBUG00000016992	lsm7	98	83.333	Eptatretus_burgeri
ENSAOCG00000001077	lsm7	92	91.089	ENSECAG00000001440	LSM7	65	91.089	Equus_caballus
ENSAOCG00000001077	lsm7	92	94.059	ENSFCAG00000003445	LSM7	98	94.059	Felis_catus
ENSAOCG00000001077	lsm7	92	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSAOCG00000001077	lsm7	87	94.792	ENSFDAG00000007661	LSM7	97	94.624	Fukomys_damarensis
ENSAOCG00000001077	lsm7	93	98.039	ENSFHEG00000006349	lsm7	91	98.039	Fundulus_heteroclitus
ENSAOCG00000001077	lsm7	93	97.059	ENSGMOG00000013320	lsm7	99	97.059	Gadus_morhua
ENSAOCG00000001077	lsm7	92	99.010	ENSGAFG00000013902	lsm7	99	98.039	Gambusia_affinis
ENSAOCG00000001077	lsm7	93	98.039	ENSGACG00000010390	lsm7	99	98.039	Gasterosteus_aculeatus
ENSAOCG00000001077	lsm7	92	95.050	ENSGGOG00000010172	LSM7	98	95.050	Gorilla_gorilla
ENSAOCG00000001077	lsm7	93	98.039	ENSHBUG00000004616	lsm7	99	98.039	Haplochromis_burtoni
ENSAOCG00000001077	lsm7	92	95.050	ENSHGLG00000010587	LSM7	98	95.050	Heterocephalus_glaber_female
ENSAOCG00000001077	lsm7	92	95.050	ENSHGLG00100000852	LSM7	98	95.050	Heterocephalus_glaber_male
ENSAOCG00000001077	lsm7	92	99.010	ENSHCOG00000020252	lsm7	100	99.010	Hippocampus_comes
ENSAOCG00000001077	lsm7	92	96.040	ENSIPUG00000024724	lsm7	99	95.098	Ictalurus_punctatus
ENSAOCG00000001077	lsm7	94	94.175	ENSSTOG00000028372	LSM7	99	95.050	Ictidomys_tridecemlineatus
ENSAOCG00000001077	lsm7	94	94.175	ENSJJAG00000001936	Lsm7	99	94.175	Jaculus_jaculus
ENSAOCG00000001077	lsm7	92	99.010	ENSKMAG00000022151	lsm7	99	98.039	Kryptolebias_marmoratus
ENSAOCG00000001077	lsm7	92	100.000	ENSLBEG00000005203	lsm7	98	100.000	Labrus_bergylta
ENSAOCG00000001077	lsm7	85	95.699	ENSLACG00000015700	LSM7	99	95.098	Latimeria_chalumnae
ENSAOCG00000001077	lsm7	93	96.078	ENSLOCG00000004356	lsm7	99	96.078	Lepisosteus_oculatus
ENSAOCG00000001077	lsm7	93	94.118	ENSLAFG00000029302	LSM7	99	94.118	Loxodonta_africana
ENSAOCG00000001077	lsm7	92	95.050	ENSMFAG00000044572	LSM7	98	95.050	Macaca_fascicularis
ENSAOCG00000001077	lsm7	92	95.050	ENSMMUG00000000452	LSM7	99	95.050	Macaca_mulatta
ENSAOCG00000001077	lsm7	92	95.050	ENSMNEG00000004393	LSM7	98	95.050	Macaca_nemestrina
ENSAOCG00000001077	lsm7	92	95.050	ENSMLEG00000030852	LSM7	100	95.050	Mandrillus_leucophaeus
ENSAOCG00000001077	lsm7	92	99.010	ENSMAMG00000005410	lsm7	99	98.039	Mastacembelus_armatus
ENSAOCG00000001077	lsm7	92	99.010	ENSMZEG00005028055	lsm7	99	98.039	Maylandia_zebra
ENSAOCG00000001077	lsm7	92	97.030	ENSMGAG00000000750	LSM7	87	97.030	Meleagris_gallopavo
ENSAOCG00000001077	lsm7	93	93.137	ENSMAUG00000009276	Lsm7	99	93.137	Mesocricetus_auratus
ENSAOCG00000001077	lsm7	92	95.050	ENSMICG00000009988	-	98	95.050	Microcebus_murinus
ENSAOCG00000001077	lsm7	92	95.050	ENSMICG00000028619	-	98	95.050	Microcebus_murinus
ENSAOCG00000001077	lsm7	92	94.059	ENSMOCG00000016925	Lsm7	98	94.059	Microtus_ochrogaster
ENSAOCG00000001077	lsm7	92	100.000	ENSMMOG00000019645	lsm7	97	99.020	Mola_mola
ENSAOCG00000001077	lsm7	92	96.040	ENSMODG00000004722	LSM7	99	95.098	Monodelphis_domestica
ENSAOCG00000001077	lsm7	92	99.010	ENSMALG00000014511	lsm7	78	99.010	Monopterus_albus
ENSAOCG00000001077	lsm7	91	94.000	MGP_CAROLIEiJ_G0015607	Lsm7	97	94.000	Mus_caroli
ENSAOCG00000001077	lsm7	91	94.000	ENSMUSG00000035215	Lsm7	97	94.000	Mus_musculus
ENSAOCG00000001077	lsm7	91	94.000	MGP_PahariEiJ_G0031020	Lsm7	97	94.000	Mus_pahari
ENSAOCG00000001077	lsm7	91	94.000	MGP_SPRETEiJ_G0016425	Lsm7	97	94.000	Mus_spretus
ENSAOCG00000001077	lsm7	95	85.714	ENSMLUG00000024002	-	85	89.130	Myotis_lucifugus
ENSAOCG00000001077	lsm7	93	93.137	ENSMLUG00000013097	-	99	93.137	Myotis_lucifugus
ENSAOCG00000001077	lsm7	92	93.069	ENSNGAG00000021637	Lsm7	98	93.069	Nannospalax_galili
ENSAOCG00000001077	lsm7	92	99.010	ENSNBRG00000001237	-	93	87.931	Neolamprologus_brichardi
ENSAOCG00000001077	lsm7	93	98.039	ENSNBRG00000015770	lsm7	88	98.039	Neolamprologus_brichardi
ENSAOCG00000001077	lsm7	92	95.050	ENSNLEG00000002265	LSM7	98	95.050	Nomascus_leucogenys
ENSAOCG00000001077	lsm7	92	95.050	ENSODEG00000013590	-	98	95.050	Octodon_degus
ENSAOCG00000001077	lsm7	92	75.248	ENSODEG00000008190	-	89	74.194	Octodon_degus
ENSAOCG00000001077	lsm7	92	88.119	ENSODEG00000018769	-	98	88.119	Octodon_degus
ENSAOCG00000001077	lsm7	92	99.010	ENSONIG00000001801	lsm7	88	98.039	Oreochromis_niloticus
ENSAOCG00000001077	lsm7	93	99.020	ENSORLG00000023951	lsm7	99	99.020	Oryzias_latipes
ENSAOCG00000001077	lsm7	93	99.020	ENSORLG00020022226	lsm7	99	99.020	Oryzias_latipes_hni
ENSAOCG00000001077	lsm7	93	100.000	ENSORLG00015020044	lsm7	94	100.000	Oryzias_latipes_hsok
ENSAOCG00000001077	lsm7	92	100.000	ENSOMEG00000012806	lsm7	99	99.020	Oryzias_melastigma
ENSAOCG00000001077	lsm7	92	83.168	ENSOGAG00000024373	-	91	82.796	Otolemur_garnettii
ENSAOCG00000001077	lsm7	93	92.157	ENSOGAG00000000144	-	100	92.157	Otolemur_garnettii
ENSAOCG00000001077	lsm7	93	94.118	ENSOARG00000014013	LSM7	99	94.118	Ovis_aries
ENSAOCG00000001077	lsm7	92	95.050	ENSPPAG00000026500	LSM7	98	95.050	Pan_paniscus
ENSAOCG00000001077	lsm7	92	94.059	ENSPPRG00000008624	LSM7	98	94.059	Panthera_pardus
ENSAOCG00000001077	lsm7	92	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSAOCG00000001077	lsm7	92	95.050	ENSPTRG00000010233	LSM7	98	95.050	Pan_troglodytes
ENSAOCG00000001077	lsm7	92	95.050	ENSPANG00000020668	LSM7	98	95.050	Papio_anubis
ENSAOCG00000001077	lsm7	92	98.020	ENSPKIG00000011325	lsm7	99	97.059	Paramormyrops_kingsleyae
ENSAOCG00000001077	lsm7	92	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSAOCG00000001077	lsm7	92	100.000	ENSPMGG00000006498	lsm7	99	99.020	Periophthalmus_magnuspinnatus
ENSAOCG00000001077	lsm7	92	96.040	ENSPCIG00000030454	LSM7	99	96.040	Phascolarctos_cinereus
ENSAOCG00000001077	lsm7	93	97.059	ENSPFOG00000012467	lsm7	90	97.059	Poecilia_formosa
ENSAOCG00000001077	lsm7	93	97.059	ENSPLAG00000000252	lsm7	94	98.020	Poecilia_latipinna
ENSAOCG00000001077	lsm7	93	97.059	ENSPMEG00000000587	lsm7	94	98.020	Poecilia_mexicana
ENSAOCG00000001077	lsm7	73	75.309	ENSPREG00000016718	lsm7	63	77.215	Poecilia_reticulata
ENSAOCG00000001077	lsm7	92	74.257	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSAOCG00000001077	lsm7	92	95.050	ENSPCOG00000017177	LSM7	99	95.050	Propithecus_coquereli
ENSAOCG00000001077	lsm7	92	99.010	ENSPNYG00000006938	lsm7	99	98.039	Pundamilia_nyererei
ENSAOCG00000001077	lsm7	92	98.020	ENSPNAG00000010141	lsm7	99	98.020	Pygocentrus_nattereri
ENSAOCG00000001077	lsm7	91	95.000	ENSRNOG00000019552	Lsm7	97	95.000	Rattus_norvegicus
ENSAOCG00000001077	lsm7	92	95.050	ENSRBIG00000035978	LSM7	98	95.050	Rhinopithecus_bieti
ENSAOCG00000001077	lsm7	92	95.050	ENSRROG00000034044	LSM7	98	95.050	Rhinopithecus_roxellana
ENSAOCG00000001077	lsm7	86	45.098	YNL147W	-	75	47.674	Saccharomyces_cerevisiae
ENSAOCG00000001077	lsm7	92	95.050	ENSSBOG00000034899	LSM7	98	95.050	Saimiri_boliviensis_boliviensis
ENSAOCG00000001077	lsm7	92	96.040	ENSSFOG00015006728	lsm7	99	95.098	Scleropages_formosus
ENSAOCG00000001077	lsm7	100	93.636	ENSSMAG00000004195	lsm7	100	93.636	Scophthalmus_maximus
ENSAOCG00000001077	lsm7	92	100.000	ENSSDUG00000001863	lsm7	99	99.020	Seriola_dumerili
ENSAOCG00000001077	lsm7	92	100.000	ENSSLDG00000016339	lsm7	99	99.020	Seriola_lalandi_dorsalis
ENSAOCG00000001077	lsm7	92	100.000	ENSSPAG00000015221	lsm7	99	99.020	Stegastes_partitus
ENSAOCG00000001077	lsm7	92	95.050	ENSSSCG00000013463	LSM7	99	95.050	Sus_scrofa
ENSAOCG00000001077	lsm7	92	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSAOCG00000001077	lsm7	92	98.020	ENSTRUG00000022913	lsm7	99	97.059	Takifugu_rubripes
ENSAOCG00000001077	lsm7	92	98.020	ENSTNIG00000015525	lsm7	99	97.059	Tetraodon_nigroviridis
ENSAOCG00000001077	lsm7	64	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSAOCG00000001077	lsm7	93	93.137	ENSUAMG00000000912	LSM7	85	93.137	Ursus_americanus
ENSAOCG00000001077	lsm7	93	94.118	ENSUMAG00000006556	LSM7	79	95.050	Ursus_maritimus
ENSAOCG00000001077	lsm7	65	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSAOCG00000001077	lsm7	92	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSAOCG00000001077	lsm7	92	99.010	ENSXCOG00000002572	lsm7	99	99.010	Xiphophorus_couchianus
ENSAOCG00000001077	lsm7	93	98.039	ENSXMAG00000018630	lsm7	99	98.039	Xiphophorus_maculatus