EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSAOCG00000001636 (Gene tree)
Gene ID
111568991
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Amphiprion_ocellaris
Status
putative
Strand
Plus strand
Length
4263 bases
Position
chrNXFZ01000332.1:718993-723255
Accession
111568991
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAOCP00000017403LSMPF01423.224.5e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAOCT00000026690-1498XM_023270917ENSAOCP0000001740391 (aa)XP_023126685UPI000B900B8D
Gene Model
Click here to download ENSAOCG00000001636's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000001636's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSAOCG00000001636lsm58630.488ENSAOCG00000023377snrpe8730.488
ENSAOCG00000001636lsm58234.667ENSAOCG00000007658lsm37434.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAOCG00000001636lsm510095.604ENSG00000106355LSM510096.774Homo_sapiens
ENSAOCG00000001636lsm59098.780ENSAPOG00000011743LSM5100100.000Acanthochromis_polyacanthus
ENSAOCG00000001636lsm5100100.000ENSAPOG00000020779LSM5100100.000Acanthochromis_polyacanthus
ENSAOCG00000001636lsm510095.604ENSAMEG00000006700LSM510095.604Ailuropoda_melanoleuca
ENSAOCG00000001636lsm59659.770ENSACIG00000019185lsm59859.770Amphilophus_citrinellus
ENSAOCG00000001636lsm568100.000ENSAPEG00000008201lsm5100100.000Amphiprion_percula
ENSAOCG00000001636lsm5100100.000ENSAPEG00000008151lsm5100100.000Amphiprion_percula
ENSAOCG00000001636lsm59096.341ENSATEG00000020470lsm510061.538Anabas_testudineus
ENSAOCG00000001636lsm58197.297ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSAOCG00000001636lsm56294.643ENSACAG00000009530LSM59394.643Anolis_carolinensis
ENSAOCG00000001636lsm59991.111ENSANAG00000024192-9491.111Aotus_nancymaae
ENSAOCG00000001636lsm510074.725ENSANAG00000037758-10074.725Aotus_nancymaae
ENSAOCG00000001636lsm510094.505ENSANAG00000034409-10094.505Aotus_nancymaae
ENSAOCG00000001636lsm59697.701ENSACLG00000012891lsm59997.701Astatotilapia_calliptera
ENSAOCG00000001636lsm510082.979ENSAMXG00000035543lsm510082.979Astyanax_mexicanus
ENSAOCG00000001636lsm55377.083ENSBTAG00000052014-6377.083Bos_taurus
ENSAOCG00000001636lsm510095.604ENSBTAG00000002332LSM510095.604Bos_taurus
ENSAOCG00000001636lsm510072.527WBGene00003079lsm-510072.527Caenorhabditis_elegans
ENSAOCG00000001636lsm510095.604ENSCJAG00000047379LSM58186.538Callithrix_jacchus
ENSAOCG00000001636lsm59983.333ENSCJAG00000005678-10083.333Callithrix_jacchus
ENSAOCG00000001636lsm510094.505ENSCAFG00000019261-10094.505Canis_familiaris
ENSAOCG00000001636lsm55588.000ENSCAFG00000030781-5888.000Canis_familiaris
ENSAOCG00000001636lsm510095.604ENSCAFG00020004946LSM510095.604Canis_lupus_dingo
ENSAOCG00000001636lsm510095.604ENSCHIG00000024539LSM510095.604Capra_hircus
ENSAOCG00000001636lsm510093.407ENSCHIG00000004079-10093.407Capra_hircus
ENSAOCG00000001636lsm58174.324ENSCHIG00000021428-9571.591Capra_hircus
ENSAOCG00000001636lsm510095.604ENSTSYG00000006449-10095.604Carlito_syrichta
ENSAOCG00000001636lsm510078.022ENSTSYG00000026530-9178.022Carlito_syrichta
ENSAOCG00000001636lsm510083.516ENSTSYG00000028728-10083.516Carlito_syrichta
ENSAOCG00000001636lsm510070.330ENSTSYG00000036637-10070.330Carlito_syrichta
ENSAOCG00000001636lsm58290.667ENSCAPG00000006980LSM510090.667Cavia_aperea
ENSAOCG00000001636lsm510095.604ENSCPOG00000036386LSM510095.604Cavia_porcellus
ENSAOCG00000001636lsm510076.923ENSCCAG00000032792-10076.923Cebus_capucinus
ENSAOCG00000001636lsm510094.505ENSCCAG00000000821-10094.505Cebus_capucinus
ENSAOCG00000001636lsm510093.407ENSCCAG00000032123-10093.407Cebus_capucinus
ENSAOCG00000001636lsm510064.835ENSCCAG00000037334-10064.835Cebus_capucinus
ENSAOCG00000001636lsm510095.604ENSCCAG00000037808-10095.604Cebus_capucinus
ENSAOCG00000001636lsm59984.444ENSCATG00000014790-9592.727Cercocebus_atys
ENSAOCG00000001636lsm510095.604ENSCATG00000040218LSM510096.774Cercocebus_atys
ENSAOCG00000001636lsm510095.604ENSCLAG00000000202LSM510095.604Chinchilla_lanigera
ENSAOCG00000001636lsm510081.319ENSCLAG00000005062-9081.319Chinchilla_lanigera
ENSAOCG00000001636lsm58296.000ENSCHOG00000005335LSM59996.000Choloepus_hoffmanni
ENSAOCG00000001636lsm510095.604ENSCPBG00000013685LSM510095.604Chrysemys_picta_bellii
ENSAOCG00000001636lsm59784.091ENSCING00000020625-9984.091Ciona_intestinalis
ENSAOCG00000001636lsm59586.047ENSCSAVG00000001439-9886.047Ciona_savignyi
ENSAOCG00000001636lsm510095.604ENSCANG00000039909LSM510096.774Colobus_angolensis_palliatus
ENSAOCG00000001636lsm510095.604ENSCGRG00001015461Lsm510095.604Cricetulus_griseus_chok1gshd
ENSAOCG00000001636lsm58297.333ENSCGRG00000007677Lsm510097.333Cricetulus_griseus_crigri
ENSAOCG00000001636lsm510062.637ENSCSEG00000015286lsm510062.637Cynoglossus_semilaevis
ENSAOCG00000001636lsm510097.802ENSCVAG00000004262lsm510097.802Cyprinodon_variegatus
ENSAOCG00000001636lsm510095.604ENSDARG00000071573lsm510098.387Danio_rerio
ENSAOCG00000001636lsm59685.057ENSDNOG00000049495-9685.057Dasypus_novemcinctus
ENSAOCG00000001636lsm510095.604ENSDNOG00000034958LSM510095.604Dasypus_novemcinctus
ENSAOCG00000001636lsm510095.604ENSDORG00000009422Lsm510095.604Dipodomys_ordii
ENSAOCG00000001636lsm59878.652FBgn0035675CG66109878.652Drosophila_melanogaster
ENSAOCG00000001636lsm58178.378ENSETEG00000016074-9878.378Echinops_telfairi
ENSAOCG00000001636lsm59875.281ENSETEG00000010651-9975.281Echinops_telfairi
ENSAOCG00000001636lsm59864.045ENSETEG00000000777-9964.045Echinops_telfairi
ENSAOCG00000001636lsm510095.604ENSETEG00000018068LSM510095.604Echinops_telfairi
ENSAOCG00000001636lsm59972.222ENSETEG00000001469-9972.222Echinops_telfairi
ENSAOCG00000001636lsm510093.407ENSEBUG00000008540lsm510093.407Eptatretus_burgeri
ENSAOCG00000001636lsm510095.604ENSEASG00005003500LSM510095.604Equus_asinus_asinus
ENSAOCG00000001636lsm510081.319ENSECAG00000018445LSM510081.319Equus_caballus
ENSAOCG00000001636lsm56392.982ENSEEUG00000004102LSM59592.982Erinaceus_europaeus
ENSAOCG00000001636lsm510096.703ENSELUG00000007792lsm510096.703Esox_lucius
ENSAOCG00000001636lsm510095.604ENSFCAG00000000230LSM510095.604Felis_catus
ENSAOCG00000001636lsm58497.368ENSFALG00000001892LSM59297.368Ficedula_albicollis
ENSAOCG00000001636lsm59067.073ENSFDAG00000008685-9767.073Fukomys_damarensis
ENSAOCG00000001636lsm510095.604ENSFDAG00000008767LSM510095.604Fukomys_damarensis
ENSAOCG00000001636lsm59877.528ENSFHEG00000004011lsm59677.528Fundulus_heteroclitus
ENSAOCG00000001636lsm59997.778ENSGMOG00000018235lsm510097.778Gadus_morhua
ENSAOCG00000001636lsm510094.505ENSGALG00000041625LSM510094.505Gallus_gallus
ENSAOCG00000001636lsm568100.000ENSGAFG00000016824lsm5100100.000Gambusia_affinis
ENSAOCG00000001636lsm510098.901ENSGACG00000005528lsm510098.901Gasterosteus_aculeatus
ENSAOCG00000001636lsm510095.604ENSGAGG00000015593LSM510095.604Gopherus_agassizii
ENSAOCG00000001636lsm510095.604ENSGGOG00000043469LSM510095.604Gorilla_gorilla
ENSAOCG00000001636lsm59697.701ENSHBUG00000013773lsm59997.701Haplochromis_burtoni
ENSAOCG00000001636lsm510095.604ENSHGLG00000011765LSM510095.604Heterocephalus_glaber_female
ENSAOCG00000001636lsm510092.308ENSHGLG00100015610LSM510092.308Heterocephalus_glaber_male
ENSAOCG00000001636lsm510060.440ENSHCOG00000008288lsm510060.440Hippocampus_comes
ENSAOCG00000001636lsm510095.604ENSIPUG00000021095LSM510095.604Ictalurus_punctatus
ENSAOCG00000001636lsm510095.604ENSSTOG00000012662LSM510095.604Ictidomys_tridecemlineatus
ENSAOCG00000001636lsm59280.233ENSSTOG00000033886-9780.233Ictidomys_tridecemlineatus
ENSAOCG00000001636lsm510067.033ENSJJAG00000016144-9267.033Jaculus_jaculus
ENSAOCG00000001636lsm510093.407ENSJJAG00000012145-10093.407Jaculus_jaculus
ENSAOCG00000001636lsm58788.608ENSJJAG00000004475-10088.608Jaculus_jaculus
ENSAOCG00000001636lsm510098.901ENSKMAG00000021861lsm510098.901Kryptolebias_marmoratus
ENSAOCG00000001636lsm56283.929ENSLBEG00000017379lsm59283.929Labrus_bergylta
ENSAOCG00000001636lsm510089.011ENSLBEG00000009235LSM57089.011Labrus_bergylta
ENSAOCG00000001636lsm510094.505ENSLACG00000022448LSM510094.505Latimeria_chalumnae
ENSAOCG00000001636lsm510095.604ENSLOCG00000012903lsm510095.604Lepisosteus_oculatus
ENSAOCG00000001636lsm510069.231ENSLAFG00000027938-10069.231Loxodonta_africana
ENSAOCG00000001636lsm510095.604ENSLAFG00000029579LSM510095.604Loxodonta_africana
ENSAOCG00000001636lsm510095.604ENSMFAG00000038508LSM510095.604Macaca_fascicularis
ENSAOCG00000001636lsm55391.667ENSMFAG00000031187-8191.667Macaca_fascicularis
ENSAOCG00000001636lsm510093.407ENSMFAG00000030152-10093.407Macaca_fascicularis
ENSAOCG00000001636lsm59985.556ENSMMUG00000039822-10085.556Macaca_mulatta
ENSAOCG00000001636lsm55786.538ENSMMUG00000045129-8186.538Macaca_mulatta
ENSAOCG00000001636lsm510093.407ENSMMUG00000030131-10093.407Macaca_mulatta
ENSAOCG00000001636lsm510095.604ENSMNEG00000015331LSM510096.774Macaca_nemestrina
ENSAOCG00000001636lsm510093.407ENSMNEG00000037935-10093.407Macaca_nemestrina
ENSAOCG00000001636lsm59884.270ENSMLEG00000034037-10084.270Mandrillus_leucophaeus
ENSAOCG00000001636lsm510095.604ENSMLEG00000024945LSM510095.604Mandrillus_leucophaeus
ENSAOCG00000001636lsm510093.407ENSMAMG00000012869lsm510093.407Mastacembelus_armatus
ENSAOCG00000001636lsm59697.701ENSMZEG00005019554lsm59997.701Maylandia_zebra
ENSAOCG00000001636lsm510094.505ENSMGAG00000012117LSM510094.505Meleagris_gallopavo
ENSAOCG00000001636lsm510094.505ENSMAUG00000008132-10094.505Mesocricetus_auratus
ENSAOCG00000001636lsm510095.604ENSMAUG00000012222Lsm510095.604Mesocricetus_auratus
ENSAOCG00000001636lsm59974.444ENSMICG00000033928-9674.444Microcebus_murinus
ENSAOCG00000001636lsm510095.604ENSMICG00000005353LSM510095.604Microcebus_murinus
ENSAOCG00000001636lsm510095.604ENSMOCG00000012018Lsm510095.604Microtus_ochrogaster
ENSAOCG00000001636lsm584100.000ENSMMOG00000004026lsm587100.000Mola_mola
ENSAOCG00000001636lsm56896.774ENSMODG00000013274-10096.774Monodelphis_domestica
ENSAOCG00000001636lsm56893.548ENSMALG00000010343lsm510093.548Monopterus_albus
ENSAOCG00000001636lsm510095.604MGP_CAROLIEiJ_G0028421Lsm510095.604Mus_caroli
ENSAOCG00000001636lsm510095.604ENSMUSG00000091625Lsm510095.604Mus_musculus
ENSAOCG00000001636lsm510095.604MGP_PahariEiJ_G0022171Lsm510095.604Mus_pahari
ENSAOCG00000001636lsm510095.604MGP_SPRETEiJ_G0029423Lsm510095.604Mus_spretus
ENSAOCG00000001636lsm510095.604ENSMLUG00000017028LSM510095.604Myotis_lucifugus
ENSAOCG00000001636lsm59975.556ENSNGAG00000022569-9675.556Nannospalax_galili
ENSAOCG00000001636lsm510095.604ENSNGAG00000024142Lsm510095.604Nannospalax_galili
ENSAOCG00000001636lsm510083.871ENSNGAG00000017707-10083.871Nannospalax_galili
ENSAOCG00000001636lsm56398.246ENSNBRG00000011386lsm57698.246Neolamprologus_brichardi
ENSAOCG00000001636lsm510095.604ENSNLEG00000015268LSM510095.604Nomascus_leucogenys
ENSAOCG00000001636lsm58297.333ENSOPRG00000002443LSM510097.333Ochotona_princeps
ENSAOCG00000001636lsm510095.604ENSODEG00000008258-10095.604Octodon_degus
ENSAOCG00000001636lsm510095.604ENSODEG00000019072-10095.604Octodon_degus
ENSAOCG00000001636lsm58260.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSAOCG00000001636lsm510095.604ENSOCUG00000029043LSM510095.604Oryctolagus_cuniculus
ENSAOCG00000001636lsm510097.802ENSORLG00000027725lsm55897.802Oryzias_latipes
ENSAOCG00000001636lsm59694.253ENSORLG00020003019lsm58694.253Oryzias_latipes_hni
ENSAOCG00000001636lsm510097.802ENSORLG00015003338lsm510097.802Oryzias_latipes_hsok
ENSAOCG00000001636lsm510096.703ENSOMEG00000001078lsm510096.703Oryzias_melastigma
ENSAOCG00000001636lsm510095.604ENSOGAG00000013892LSM510095.604Otolemur_garnettii
ENSAOCG00000001636lsm510095.604ENSOARG00000006944LSM510095.604Ovis_aries
ENSAOCG00000001636lsm510095.604ENSPPAG00000003697-10095.604Pan_paniscus
ENSAOCG00000001636lsm510095.604ENSPPRG00000002550LSM510095.604Panthera_pardus
ENSAOCG00000001636lsm510095.604ENSPTIG00000015604LSM510095.604Panthera_tigris_altaica
ENSAOCG00000001636lsm510095.604ENSPTRG00000019057LSM510095.604Pan_troglodytes
ENSAOCG00000001636lsm510079.121ENSPTRG00000049488-10081.319Pan_troglodytes
ENSAOCG00000001636lsm510092.308ENSPANG00000033477-10092.308Papio_anubis
ENSAOCG00000001636lsm59985.556ENSPANG00000032538-10085.556Papio_anubis
ENSAOCG00000001636lsm510095.604ENSPANG00000032179-10095.604Papio_anubis
ENSAOCG00000001636lsm510097.802ENSPKIG00000011910lsm510097.802Paramormyrops_kingsleyae
ENSAOCG00000001636lsm58197.297ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSAOCG00000001636lsm568100.000ENSPMGG00000011699lsm5100100.000Periophthalmus_magnuspinnatus
ENSAOCG00000001636lsm510068.132ENSPEMG00000022375-10068.132Peromyscus_maniculatus_bairdii
ENSAOCG00000001636lsm55293.617ENSPEMG00000019994-8093.617Peromyscus_maniculatus_bairdii
ENSAOCG00000001636lsm510097.802ENSPFOG00000001433lsm510097.802Poecilia_formosa
ENSAOCG00000001636lsm510097.802ENSPLAG00000009665lsm510097.802Poecilia_latipinna
ENSAOCG00000001636lsm510097.802ENSPMEG00000022265lsm510097.802Poecilia_mexicana
ENSAOCG00000001636lsm568100.000ENSPREG00000022452lsm5100100.000Poecilia_reticulata
ENSAOCG00000001636lsm510092.308ENSPPYG00000017661LSM510092.308Pongo_abelii
ENSAOCG00000001636lsm58996.296ENSPCAG00000013740LSM510096.296Procavia_capensis
ENSAOCG00000001636lsm510095.604ENSPVAG00000009786LSM510095.604Pteropus_vampyrus
ENSAOCG00000001636lsm59697.701ENSPNYG00000022236lsm59997.701Pundamilia_nyererei
ENSAOCG00000001636lsm510095.604ENSPNAG00000001887lsm510095.604Pygocentrus_nattereri
ENSAOCG00000001636lsm510092.391ENSRNOG00000027305AABR07065089.110092.391Rattus_norvegicus
ENSAOCG00000001636lsm510095.604ENSRNOG00000042126Lsm510095.604Rattus_norvegicus
ENSAOCG00000001636lsm510095.604ENSRBIG00000027803-10096.774Rhinopithecus_bieti
ENSAOCG00000001636lsm510095.604ENSRBIG00000030340-10095.604Rhinopithecus_bieti
ENSAOCG00000001636lsm510095.604ENSRBIG00000030714-10095.604Rhinopithecus_bieti
ENSAOCG00000001636lsm510094.505ENSRBIG00000024431-10094.505Rhinopithecus_bieti
ENSAOCG00000001636lsm510095.604ENSRROG00000004655-10095.604Rhinopithecus_roxellana
ENSAOCG00000001636lsm510095.604ENSRROG00000023884-10095.604Rhinopithecus_roxellana
ENSAOCG00000001636lsm510095.604ENSRROG00000042782-10096.774Rhinopithecus_roxellana
ENSAOCG00000001636lsm58548.780YER146W-8848.780Saccharomyces_cerevisiae
ENSAOCG00000001636lsm510093.407ENSSBOG00000019124-10093.407Saimiri_boliviensis_boliviensis
ENSAOCG00000001636lsm510095.604ENSSBOG00000012312LSM510095.604Saimiri_boliviensis_boliviensis
ENSAOCG00000001636lsm510073.626ENSSBOG00000034794-10073.626Saimiri_boliviensis_boliviensis
ENSAOCG00000001636lsm510097.802ENSSFOG00015010099lsm510097.802Scleropages_formosus
ENSAOCG00000001636lsm510062.637ENSSMAG00000007895lsm510062.637Scophthalmus_maximus
ENSAOCG00000001636lsm568100.000ENSSDUG00000010762lsm5100100.000Seriola_dumerili
ENSAOCG00000001636lsm510098.901ENSSLDG00000025242lsm510098.901Seriola_lalandi_dorsalis
ENSAOCG00000001636lsm58676.923ENSSLDG00000008014-9376.923Seriola_lalandi_dorsalis
ENSAOCG00000001636lsm510067.033ENSSARG00000003330LSM510067.033Sorex_araneus
ENSAOCG00000001636lsm510093.407ENSSPUG00000002690LSM510095.161Sphenodon_punctatus
ENSAOCG00000001636lsm510063.736ENSSPAG00000005435lsm510063.736Stegastes_partitus
ENSAOCG00000001636lsm57684.058ENSSSCG00000029661-9684.058Sus_scrofa
ENSAOCG00000001636lsm510095.604ENSSSCG00000026064-10095.604Sus_scrofa
ENSAOCG00000001636lsm510093.407ENSTGUG00000017539LSM510093.407Taeniopygia_guttata
ENSAOCG00000001636lsm59087.356ENSTRUG00000017749lsm56587.356Takifugu_rubripes
ENSAOCG00000001636lsm510095.604ENSTNIG00000008695lsm510095.604Tetraodon_nigroviridis
ENSAOCG00000001636lsm510095.604ENSTBEG00000004876LSM510095.604Tupaia_belangeri
ENSAOCG00000001636lsm510095.604ENSTTRG00000004237LSM510095.604Tursiops_truncatus
ENSAOCG00000001636lsm55786.538ENSUAMG00000009786LSM56886.538Ursus_americanus
ENSAOCG00000001636lsm510094.505ENSUMAG00000002625LSM56594.505Ursus_maritimus
ENSAOCG00000001636lsm510095.604ENSVPAG00000009985LSM510095.604Vicugna_pacos
ENSAOCG00000001636lsm510095.604ENSVVUG00000021311LSM510095.604Vulpes_vulpes
ENSAOCG00000001636lsm59095.122ENSXETG00000026465lsm510095.122Xenopus_tropicalis
ENSAOCG00000001636lsm568100.000ENSXCOG00000015348lsm5100100.000Xiphophorus_couchianus
ENSAOCG00000001636lsm510097.802ENSXMAG00000029988lsm510097.802Xiphophorus_maculatus

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