EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAOCG00000001644 (Gene tree)
Gene ID: 111572639
Gene Symbol: cth1
Alias: cb266|fa18c01|wu:fa18c01|zfcth1
Full Name: mRNA decay activator protein ZFP36L2-B-like
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Plus strand
Length: 3319 bases
Position: chrNXFZ01002860.1:66218-69536
Accession: 111572639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000017572	zf-CCCH	PF00642.24	1.5e-31	1	4
ENSAOCP00000017572	zf-CCCH	PF00642.24	1.5e-31	2	4
ENSAOCP00000017572	zf-CCCH	PF00642.24	1.5e-31	3	4
ENSAOCP00000017572	zf-CCCH	PF00642.24	1.5e-31	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000026887	-	1644	XM_023276394	ENSAOCP00000017572	309 (aa)	XP_023132162	UPI000C301AF6

Gene Model

Click here to download ENSAOCG00000001644's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000001644's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000001644	cth1	89	87.365	ENSAPOG00000012552	cth1	95	87.004	Acanthochromis_polyacanthus
ENSAOCG00000001644	cth1	88	68.132	ENSACIG00000016026	cth1	99	65.605	Amphilophus_citrinellus
ENSAOCG00000001644	cth1	100	100.000	ENSAPEG00000008930	cth1	100	100.000	Amphiprion_percula
ENSAOCG00000001644	cth1	99	75.767	ENSATEG00000002281	cth1	97	73.313	Anabas_testudineus
ENSAOCG00000001644	cth1	90	65.591	ENSACLG00000015353	cth1	95	66.308	Astatotilapia_calliptera
ENSAOCG00000001644	cth1	96	57.009	ENSAMXG00000025717	cth1	92	55.298	Astyanax_mexicanus
ENSAOCG00000001644	cth1	100	70.405	ENSCSEG00000014617	cth1	100	68.224	Cynoglossus_semilaevis
ENSAOCG00000001644	cth1	100	62.058	ENSCVAG00000001680	cth1	65	61.290	Cyprinodon_variegatus
ENSAOCG00000001644	cth1	91	58.000	ENSDARG00000057328	cth1	90	57.333	Danio_rerio
ENSAOCG00000001644	cth1	99	55.132	ENSELUG00000012738	cth1	89	54.754	Esox_lucius
ENSAOCG00000001644	cth1	100	66.454	ENSFHEG00000022665	cth1	100	65.495	Fundulus_heteroclitus
ENSAOCG00000001644	cth1	99	66.242	ENSGMOG00000007360	cth1	100	64.650	Gadus_morhua
ENSAOCG00000001644	cth1	100	62.461	ENSGAFG00000019288	cth1	100	61.682	Gambusia_affinis
ENSAOCG00000001644	cth1	99	70.418	ENSGACG00000000802	cth1	99	68.810	Gasterosteus_aculeatus
ENSAOCG00000001644	cth1	100	66.559	ENSHBUG00000014400	cth1	100	67.203	Haplochromis_burtoni
ENSAOCG00000001644	cth1	99	54.369	ENSHCOG00000010276	cth1	99	52.104	Hippocampus_comes
ENSAOCG00000001644	cth1	99	57.012	ENSIPUG00000018040	cth1	90	56.187	Ictalurus_punctatus
ENSAOCG00000001644	cth1	100	68.387	ENSKMAG00000005944	cth1	100	68.387	Kryptolebias_marmoratus
ENSAOCG00000001644	cth1	100	77.673	ENSLBEG00000019253	cth1	100	77.673	Labrus_bergylta
ENSAOCG00000001644	cth1	69	51.163	ENSLOCG00000002047	cth1	98	51.163	Lepisosteus_oculatus
ENSAOCG00000001644	cth1	72	73.543	ENSMAMG00000001525	cth1	60	74.554	Mastacembelus_armatus
ENSAOCG00000001644	cth1	100	66.559	ENSMZEG00005022335	cth1	100	67.203	Maylandia_zebra
ENSAOCG00000001644	cth1	94	72.607	ENSMMOG00000020518	cth1	100	73.927	Mola_mola
ENSAOCG00000001644	cth1	100	59.626	ENSMALG00000020738	cth1	58	73.991	Monopterus_albus
ENSAOCG00000001644	cth1	88	64.469	ENSNBRG00000022789	cth1	88	64.599	Neolamprologus_brichardi
ENSAOCG00000001644	cth1	99	66.129	ENSONIG00000021318	cth1	99	66.129	Oreochromis_niloticus
ENSAOCG00000001644	cth1	100	57.372	ENSORLG00000022847	cth1	100	60.256	Oryzias_latipes
ENSAOCG00000001644	cth1	100	57.692	ENSORLG00020011979	cth1	100	60.577	Oryzias_latipes_hni
ENSAOCG00000001644	cth1	100	57.372	ENSORLG00015013084	cth1	100	60.256	Oryzias_latipes_hsok
ENSAOCG00000001644	cth1	100	57.372	ENSOMEG00000005809	cth1	85	60.323	Oryzias_melastigma
ENSAOCG00000001644	cth1	97	51.840	ENSPKIG00000015883	cth1	88	50.495	Paramormyrops_kingsleyae
ENSAOCG00000001644	cth1	99	72.393	ENSPMGG00000004275	cth1	100	71.517	Periophthalmus_magnuspinnatus
ENSAOCG00000001644	cth1	100	65.190	ENSPFOG00000013583	cth1	94	63.376	Poecilia_formosa
ENSAOCG00000001644	cth1	100	64.873	ENSPLAG00000018158	cth1	94	63.057	Poecilia_latipinna
ENSAOCG00000001644	cth1	100	66.139	ENSPMEG00000005744	cth1	100	63.376	Poecilia_mexicana
ENSAOCG00000001644	cth1	99	64.217	ENSPREG00000004099	cth1	99	63.226	Poecilia_reticulata
ENSAOCG00000001644	cth1	89	64.964	ENSPNYG00000016705	cth1	85	63.953	Pundamilia_nyererei
ENSAOCG00000001644	cth1	96	56.522	ENSPNAG00000013147	cth1	90	55.116	Pygocentrus_nattereri
ENSAOCG00000001644	cth1	91	54.817	ENSSFOG00015017190	cth1	65	62.085	Scleropages_formosus
ENSAOCG00000001644	cth1	100	75.389	ENSSMAG00000007977	cth1	100	74.143	Scophthalmus_maximus
ENSAOCG00000001644	cth1	100	75.000	ENSSDUG00000004321	cth1	100	75.000	Seriola_dumerili
ENSAOCG00000001644	cth1	99	75.305	ENSSLDG00000010023	-	100	74.848	Seriola_lalandi_dorsalis
ENSAOCG00000001644	cth1	100	75.076	ENSSLDG00000004516	-	100	74.622	Seriola_lalandi_dorsalis
ENSAOCG00000001644	cth1	100	75.684	ENSSLDG00000012760	cth1	100	75.227	Seriola_lalandi_dorsalis
ENSAOCG00000001644	cth1	100	83.861	ENSSPAG00000018659	cth1	100	82.911	Stegastes_partitus
ENSAOCG00000001644	cth1	100	64.263	ENSTRUG00000012770	cth1	100	63.636	Takifugu_rubripes
ENSAOCG00000001644	cth1	100	63.636	ENSTNIG00000000740	cth1	100	62.696	Tetraodon_nigroviridis
ENSAOCG00000001644	cth1	82	57.874	ENSXCOG00000003710	cth1	82	55.649	Xiphophorus_couchianus
ENSAOCG00000001644	cth1	100	64.984	ENSXMAG00000023885	cth1	100	63.492	Xiphophorus_maculatus