EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000002230 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 10984 bases
Position: chrNXFZ01005158.1:22032-33015
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000012292	zf-C2H2	PF00096.26	4.3e-19	1	3
ENSAOCP00000012292	zf-C2H2	PF00096.26	4.3e-19	2	3
ENSAOCP00000012292	zf-C2H2	PF00096.26	4.3e-19	3	3
ENSAOCP00000012292	zf-met	PF12874.7	2.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000030573	-	1734	-	ENSAOCP00000012292	577 (aa)	-	-

Gene Model

Click here to download ENSAOCG00000002230's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000002230's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000002230	prdm1b	50	48.101	ENSAOCG00000022004	znf236	61	45.679

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000002230	prdm1b	70	91.940	ENSAPOG00000022084	prdm1b	88	91.584	Acanthochromis_polyacanthus
ENSAOCG00000002230	prdm1b	99	72.727	ENSACIG00000014426	prdm1b	96	70.764	Amphilophus_citrinellus
ENSAOCG00000002230	prdm1b	99	98.067	ENSAPEG00000019826	prdm1b	96	98.067	Amphiprion_percula
ENSAOCG00000002230	prdm1b	98	76.239	ENSATEG00000006924	prdm1b	94	76.410	Anabas_testudineus
ENSAOCG00000002230	prdm1b	97	76.950	ENSACLG00000005487	prdm1b	88	77.249	Astatotilapia_calliptera
ENSAOCG00000002230	prdm1b	68	56.962	ENSCSEG00000009707	prdm1a	56	56.962	Cynoglossus_semilaevis
ENSAOCG00000002230	prdm1b	69	61.972	ENSCVAG00000019081	prdm1a	60	61.972	Cyprinodon_variegatus
ENSAOCG00000002230	prdm1b	99	74.068	ENSCVAG00000016746	prdm1b	94	73.935	Cyprinodon_variegatus
ENSAOCG00000002230	prdm1b	99	75.254	ENSFHEG00000019848	prdm1b	96	75.085	Fundulus_heteroclitus
ENSAOCG00000002230	prdm1b	98	72.804	ENSGAFG00000016191	prdm1b	94	72.635	Gambusia_affinis
ENSAOCG00000002230	prdm1b	95	67.049	ENSGACG00000002716	prdm1b	86	62.052	Gasterosteus_aculeatus
ENSAOCG00000002230	prdm1b	97	77.043	ENSHBUG00000001475	prdm1b	94	77.345	Haplochromis_burtoni
ENSAOCG00000002230	prdm1b	99	71.429	ENSHCOG00000003617	prdm1b	95	71.429	Hippocampus_comes
ENSAOCG00000002230	prdm1b	89	73.750	ENSIPUG00000013740	prdm1b	92	52.522	Ictalurus_punctatus
ENSAOCG00000002230	prdm1b	96	71.403	ENSKMAG00000011218	prdm1b	90	71.352	Kryptolebias_marmoratus
ENSAOCG00000002230	prdm1b	98	75.468	ENSLBEG00000020955	prdm1b	94	75.254	Labrus_bergylta
ENSAOCG00000002230	prdm1b	97	53.459	ENSLOCG00000004978	prdm1b	78	53.846	Lepisosteus_oculatus
ENSAOCG00000002230	prdm1b	98	75.300	ENSMZEG00005026361	prdm1b	89	75.300	Maylandia_zebra
ENSAOCG00000002230	prdm1b	99	74.576	ENSMMOG00000013458	prdm1b	97	73.729	Mola_mola
ENSAOCG00000002230	prdm1b	97	71.601	ENSMALG00000011410	prdm1b	93	72.408	Monopterus_albus
ENSAOCG00000002230	prdm1b	94	86.905	ENSONIG00000013583	prdm1b	77	86.905	Oreochromis_niloticus
ENSAOCG00000002230	prdm1b	98	68.465	ENSORLG00000010025	prdm1b	97	68.634	Oryzias_latipes
ENSAOCG00000002230	prdm1b	95	69.164	ENSORLG00015009022	prdm1b	92	69.284	Oryzias_latipes_hsok
ENSAOCG00000002230	prdm1b	96	54.167	ENSPKIG00000022335	prdm1b	75	55.311	Paramormyrops_kingsleyae
ENSAOCG00000002230	prdm1b	90	66.304	ENSPFOG00000003103	prdm1b	67	84.722	Poecilia_formosa
ENSAOCG00000002230	prdm1b	98	74.150	ENSPLAG00000018491	prdm1b	93	73.980	Poecilia_latipinna
ENSAOCG00000002230	prdm1b	98	75.129	ENSPMEG00000007869	prdm1b	94	75.129	Poecilia_mexicana
ENSAOCG00000002230	prdm1b	98	74.533	ENSPREG00000011327	prdm1b	93	74.194	Poecilia_reticulata
ENSAOCG00000002230	prdm1b	95	39.426	ENSPVAG00000011732	PRDM1	80	40.061	Pteropus_vampyrus
ENSAOCG00000002230	prdm1b	94	42.785	ENSPNAG00000028442	prdm1a	56	59.155	Pygocentrus_nattereri
ENSAOCG00000002230	prdm1b	96	61.879	ENSSFOG00015021896	prdm1b	77	62.774	Scleropages_formosus
ENSAOCG00000002230	prdm1b	98	77.055	ENSSMAG00000020467	prdm1b	94	76.909	Scophthalmus_maximus
ENSAOCG00000002230	prdm1b	99	77.143	ENSSDUG00000020610	prdm1b	95	76.975	Seriola_dumerili
ENSAOCG00000002230	prdm1b	99	77.234	ENSSLDG00000021973	prdm1b	96	77.066	Seriola_lalandi_dorsalis
ENSAOCG00000002230	prdm1b	98	83.595	ENSSPAG00000000803	prdm1b	95	83.624	Stegastes_partitus
ENSAOCG00000002230	prdm1b	96	39.873	ENSSPAG00000009830	-	78	39.130	Stegastes_partitus
ENSAOCG00000002230	prdm1b	98	74.523	ENSXCOG00000018920	prdm1b	83	74.740	Xiphophorus_couchianus
ENSAOCG00000002230	prdm1b	99	71.477	ENSXMAG00000016765	prdm1b	96	71.698	Xiphophorus_maculatus