EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000002447 (Gene tree)
Gene ID: 111569459
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valine--tRNA ligase
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Plus strand
Length: 15002 bases
Position: chrNXFZ01002377.1:613903-628904
Accession: 111569459
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000004465	tRNA-synt_1g	PF09334.11	5.1e-12	1	1
ENSAOCP00000022452	tRNA-synt_1g	PF09334.11	6.5e-12	1	1
ENSAOCP00000022452	Anticodon_1	PF08264.13	4.4e-35	1	1
ENSAOCP00000004465	Anticodon_1	PF08264.13	4.5e-35	1	1
ENSAOCP00000022452	tRNA-synt_1	PF00133.22	5.3e-208	1	1
ENSAOCP00000004465	tRNA-synt_1	PF00133.22	1.3e-206	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000007929	-	7198	XM_023271592	ENSAOCP00000022452	1286 (aa)	XP_023127360	UPI000C30A5DF
ENSAOCT00000007995	-	3690	-	ENSAOCP00000004465	1229 (aa)	-	-

Gene Model

Click here to download ENSAOCG00000002447's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000002447's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000002447	vars	79	49.598	ENSAOCG00000000476	vars2	93	49.605

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000002447	vars	100	64.201	ENSG00000204394	VARS	99	73.313	Homo_sapiens
ENSAOCG00000002447	vars	98	94.789	ENSAPOG00000020921	vars	97	97.117	Acanthochromis_polyacanthus
ENSAOCG00000002447	vars	98	94.789	ENSAPOG00000020691	vars	97	97.117	Acanthochromis_polyacanthus
ENSAOCG00000002447	vars	100	64.308	ENSAMEG00000006417	VARS	100	64.884	Ailuropoda_melanoleuca
ENSAOCG00000002447	vars	100	90.685	ENSACIG00000013752	vars	100	91.059	Amphilophus_citrinellus
ENSAOCG00000002447	vars	100	99.767	ENSAPEG00000010638	vars	100	99.767	Amphiprion_percula
ENSAOCG00000002447	vars	100	89.807	ENSATEG00000020219	vars	100	89.807	Anabas_testudineus
ENSAOCG00000002447	vars	89	71.875	ENSACAG00000029133	-	99	71.875	Anolis_carolinensis
ENSAOCG00000002447	vars	100	63.965	ENSANAG00000015453	VARS	100	64.313	Aotus_nancymaae
ENSAOCG00000002447	vars	100	91.628	ENSACLG00000025699	vars	98	91.628	Astatotilapia_calliptera
ENSAOCG00000002447	vars	96	82.840	ENSAMXG00000017716	vars	96	82.925	Astyanax_mexicanus
ENSAOCG00000002447	vars	100	64.516	ENSBTAG00000005631	VARS	100	64.934	Bos_taurus
ENSAOCG00000002447	vars	100	63.994	ENSCJAG00000002604	VARS	100	64.419	Callithrix_jacchus
ENSAOCG00000002447	vars	100	63.887	ENSCAFG00000000636	VARS	100	64.546	Canis_familiaris
ENSAOCG00000002447	vars	93	65.781	ENSCAFG00020020790	VARS	96	65.757	Canis_lupus_dingo
ENSAOCG00000002447	vars	100	64.359	ENSCHIG00000011008	VARS	100	64.934	Capra_hircus
ENSAOCG00000002447	vars	100	64.280	ENSTSYG00000001567	VARS	100	64.524	Carlito_syrichta
ENSAOCG00000002447	vars	91	67.164	ENSCAPG00000013736	VARS	98	67.444	Cavia_aperea
ENSAOCG00000002447	vars	100	63.501	ENSCPOG00000000870	VARS	100	63.898	Cavia_porcellus
ENSAOCG00000002447	vars	100	63.651	ENSCCAG00000035656	VARS	100	64.313	Cebus_capucinus
ENSAOCG00000002447	vars	100	64.437	ENSCATG00000022394	VARS	100	64.779	Cercocebus_atys
ENSAOCG00000002447	vars	89	65.506	ENSCLAG00000009470	VARS	93	65.277	Chinchilla_lanigera
ENSAOCG00000002447	vars	100	64.201	ENSCSAG00000008784	VARS	100	64.624	Chlorocebus_sabaeus
ENSAOCG00000002447	vars	79	74.616	ENSCPBG00000007943	VARS	96	74.616	Chrysemys_picta_bellii
ENSAOCG00000002447	vars	100	64.280	ENSCANG00000033570	VARS	100	64.779	Colobus_angolensis_palliatus
ENSAOCG00000002447	vars	100	64.437	ENSCGRG00001005686	Vars	100	64.752	Cricetulus_griseus_chok1gshd
ENSAOCG00000002447	vars	93	62.781	ENSCGRG00000013352	Vars	78	63.114	Cricetulus_griseus_crigri
ENSAOCG00000002447	vars	100	83.827	ENSCSEG00000019652	vars	100	83.827	Cynoglossus_semilaevis
ENSAOCG00000002447	vars	99	90.987	ENSCVAG00000022398	vars	100	90.987	Cyprinodon_variegatus
ENSAOCG00000002447	vars	99	84.326	ENSDARG00000044575	vars	100	84.483	Danio_rerio
ENSAOCG00000002447	vars	85	68.317	ENSDORG00000016433	Vars	99	68.407	Dipodomys_ordii
ENSAOCG00000002447	vars	68	74.684	ENSETEG00000003824	VARS	77	74.684	Echinops_telfairi
ENSAOCG00000002447	vars	53	72.790	ENSEBUG00000007086	vars	82	72.964	Eptatretus_burgeri
ENSAOCG00000002447	vars	59	65.253	ENSEBUG00000004637	vars	100	65.390	Eptatretus_burgeri
ENSAOCG00000002447	vars	100	64.673	ENSEASG00005015673	VARS	100	65.012	Equus_asinus_asinus
ENSAOCG00000002447	vars	100	64.623	ENSECAG00000014620	VARS	100	65.039	Equus_caballus
ENSAOCG00000002447	vars	71	72.180	ENSEEUG00000004116	VARS	73	72.180	Erinaceus_europaeus
ENSAOCG00000002447	vars	99	84.687	ENSELUG00000006550	vars	98	84.580	Esox_lucius
ENSAOCG00000002447	vars	100	64.516	ENSFCAG00000004510	VARS	100	64.934	Felis_catus
ENSAOCG00000002447	vars	83	70.219	ENSFDAG00000011401	VARS	100	70.109	Fukomys_damarensis
ENSAOCG00000002447	vars	99	89.812	ENSFHEG00000010672	vars	100	89.812	Fundulus_heteroclitus
ENSAOCG00000002447	vars	99	82.229	ENSGMOG00000014908	vars	100	82.463	Gadus_morhua
ENSAOCG00000002447	vars	99	90.738	ENSGAFG00000021630	vars	100	90.738	Gambusia_affinis
ENSAOCG00000002447	vars	92	90.932	ENSGACG00000009601	vars	100	87.079	Gasterosteus_aculeatus
ENSAOCG00000002447	vars	100	64.280	ENSGGOG00000011364	VARS	100	64.624	Gorilla_gorilla
ENSAOCG00000002447	vars	100	91.705	ENSHBUG00000017151	vars	98	91.705	Haplochromis_burtoni
ENSAOCG00000002447	vars	100	63.465	ENSHGLG00000011646	VARS	100	64.224	Heterocephalus_glaber_female
ENSAOCG00000002447	vars	93	61.841	ENSHGLG00100018062	VARS	99	61.925	Heterocephalus_glaber_male
ENSAOCG00000002447	vars	99	84.555	ENSHCOG00000012198	vars	99	84.898	Hippocampus_comes
ENSAOCG00000002447	vars	99	83.229	ENSIPUG00000005218	vars	100	83.934	Ictalurus_punctatus
ENSAOCG00000002447	vars	100	64.201	ENSSTOG00000013112	VARS	100	64.957	Ictidomys_tridecemlineatus
ENSAOCG00000002447	vars	100	63.965	ENSJJAG00000019749	-	100	64.275	Jaculus_jaculus
ENSAOCG00000002447	vars	100	52.423	ENSJJAG00000015343	-	100	52.512	Jaculus_jaculus
ENSAOCG00000002447	vars	100	87.290	ENSKMAG00000009455	vars	100	87.814	Kryptolebias_marmoratus
ENSAOCG00000002447	vars	100	88.907	ENSLBEG00000010341	vars	100	88.907	Labrus_bergylta
ENSAOCG00000002447	vars	93	66.366	ENSLACG00000015232	VARS	99	66.475	Latimeria_chalumnae
ENSAOCG00000002447	vars	99	74.863	ENSLOCG00000004240	vars	100	74.627	Lepisosteus_oculatus
ENSAOCG00000002447	vars	100	63.808	ENSLAFG00000023090	VARS	100	64.486	Loxodonta_africana
ENSAOCG00000002447	vars	100	64.280	ENSMFAG00000001032	VARS	100	64.624	Macaca_fascicularis
ENSAOCG00000002447	vars	100	64.280	ENSMMUG00000006828	VARS	100	64.624	Macaca_mulatta
ENSAOCG00000002447	vars	100	64.280	ENSMNEG00000042072	VARS	100	64.624	Macaca_nemestrina
ENSAOCG00000002447	vars	100	64.359	ENSMLEG00000039307	VARS	100	64.701	Mandrillus_leucophaeus
ENSAOCG00000002447	vars	99	91.981	ENSMAMG00000003949	vars	100	91.981	Mastacembelus_armatus
ENSAOCG00000002447	vars	100	91.628	ENSMZEG00005018327	vars	98	91.628	Maylandia_zebra
ENSAOCG00000002447	vars	100	64.437	ENSMAUG00000006715	Vars	100	64.752	Mesocricetus_auratus
ENSAOCG00000002447	vars	100	64.157	ENSMICG00000003548	VARS	100	64.724	Microcebus_murinus
ENSAOCG00000002447	vars	100	63.507	ENSMOCG00000015404	Vars	100	63.997	Microtus_ochrogaster
ENSAOCG00000002447	vars	100	89.346	ENSMMOG00000015801	vars	100	89.346	Mola_mola
ENSAOCG00000002447	vars	100	64.201	ENSMODG00000015204	-	100	64.534	Monodelphis_domestica
ENSAOCG00000002447	vars	99	90.909	ENSMALG00000022532	vars	99	90.909	Monopterus_albus
ENSAOCG00000002447	vars	100	64.252	MGP_CAROLIEiJ_G0021491	Vars	100	65.082	Mus_caroli
ENSAOCG00000002447	vars	100	64.016	ENSMUSG00000007029	Vars	100	64.926	Mus_musculus
ENSAOCG00000002447	vars	100	64.016	MGP_PahariEiJ_G0020486	Vars	100	64.848	Mus_pahari
ENSAOCG00000002447	vars	100	64.094	MGP_SPRETEiJ_G0022396	Vars	100	65.004	Mus_spretus
ENSAOCG00000002447	vars	100	64.201	ENSMPUG00000010821	VARS	100	64.779	Mustela_putorius_furo
ENSAOCG00000002447	vars	77	67.764	ENSMLUG00000013126	VARS	100	67.527	Myotis_lucifugus
ENSAOCG00000002447	vars	100	64.101	ENSNGAG00000012151	Vars	100	64.875	Nannospalax_galili
ENSAOCG00000002447	vars	99	91.693	ENSNBRG00000020520	vars	100	91.693	Neolamprologus_brichardi
ENSAOCG00000002447	vars	100	64.280	ENSNLEG00000006351	VARS	100	64.624	Nomascus_leucogenys
ENSAOCG00000002447	vars	95	72.829	ENSMEUG00000011378	VARS	100	63.551	Notamacropus_eugenii
ENSAOCG00000002447	vars	100	64.280	ENSOPRG00000003607	VARS	100	64.934	Ochotona_princeps
ENSAOCG00000002447	vars	100	63.344	ENSODEG00000017681	VARS	100	63.757	Octodon_degus
ENSAOCG00000002447	vars	99	91.321	ENSONIG00000013064	vars	100	93.206	Oreochromis_niloticus
ENSAOCG00000002447	vars	76	67.532	ENSOANG00000005400	VARS	98	67.178	Ornithorhynchus_anatinus
ENSAOCG00000002447	vars	100	63.191	ENSOCUG00000022463	VARS	100	63.551	Oryctolagus_cuniculus
ENSAOCG00000002447	vars	99	89.097	ENSORLG00000013063	vars	100	89.097	Oryzias_latipes
ENSAOCG00000002447	vars	99	89.750	ENSORLG00020003504	vars	100	89.671	Oryzias_latipes_hni
ENSAOCG00000002447	vars	99	89.820	ENSORLG00015009001	vars	100	89.898	Oryzias_latipes_hsok
ENSAOCG00000002447	vars	99	90.525	ENSOMEG00000015016	vars	100	90.525	Oryzias_melastigma
ENSAOCG00000002447	vars	100	63.808	ENSOGAG00000007515	VARS	100	64.236	Otolemur_garnettii
ENSAOCG00000002447	vars	100	64.201	ENSPPAG00000034012	VARS	100	64.546	Pan_paniscus
ENSAOCG00000002447	vars	100	64.516	ENSPPRG00000014855	VARS	100	64.934	Panthera_pardus
ENSAOCG00000002447	vars	85	68.837	ENSPTIG00000010462	VARS	93	69.259	Panthera_tigris_altaica
ENSAOCG00000002447	vars	100	64.123	ENSPTRG00000017985	VARS	100	64.469	Pan_troglodytes
ENSAOCG00000002447	vars	100	63.294	ENSPANG00000014565	VARS	100	63.451	Papio_anubis
ENSAOCG00000002447	vars	99	81.620	ENSPKIG00000016304	vars	100	81.620	Paramormyrops_kingsleyae
ENSAOCG00000002447	vars	100	85.096	ENSPMGG00000023909	vars	100	85.289	Periophthalmus_magnuspinnatus
ENSAOCG00000002447	vars	100	64.044	ENSPEMG00000006639	Vars	100	64.391	Peromyscus_maniculatus_bairdii
ENSAOCG00000002447	vars	100	64.123	ENSPCIG00000018553	VARS	100	64.572	Phascolarctos_cinereus
ENSAOCG00000002447	vars	99	90.581	ENSPFOG00000015690	vars	100	90.581	Poecilia_formosa
ENSAOCG00000002447	vars	99	90.424	ENSPLAG00000009590	vars	100	90.424	Poecilia_latipinna
ENSAOCG00000002447	vars	99	90.502	ENSPMEG00000004708	vars	100	90.502	Poecilia_mexicana
ENSAOCG00000002447	vars	100	87.854	ENSPREG00000013264	vars	99	93.737	Poecilia_reticulata
ENSAOCG00000002447	vars	100	62.628	ENSPPYG00000016460	VARS	100	63.072	Pongo_abelii
ENSAOCG00000002447	vars	85	66.075	ENSPCAG00000013565	VARS	86	66.075	Procavia_capensis
ENSAOCG00000002447	vars	100	64.308	ENSPCOG00000010942	VARS	100	64.729	Propithecus_coquereli
ENSAOCG00000002447	vars	100	61.804	ENSPVAG00000012403	VARS	100	62.452	Pteropus_vampyrus
ENSAOCG00000002447	vars	99	91.850	ENSPNYG00000022511	vars	100	91.850	Pundamilia_nyererei
ENSAOCG00000002447	vars	99	84.676	ENSPNAG00000020962	vars	100	84.910	Pygocentrus_nattereri
ENSAOCG00000002447	vars	100	63.887	ENSRNOG00000000867	Vars	100	64.546	Rattus_norvegicus
ENSAOCG00000002447	vars	100	64.280	ENSRBIG00000041669	VARS	100	64.701	Rhinopithecus_bieti
ENSAOCG00000002447	vars	100	64.280	ENSRROG00000045490	VARS	100	64.701	Rhinopithecus_roxellana
ENSAOCG00000002447	vars	100	63.651	ENSSBOG00000035402	VARS	100	64.003	Saimiri_boliviensis_boliviensis
ENSAOCG00000002447	vars	100	63.608	ENSSHAG00000006937	VARS	100	63.942	Sarcophilus_harrisii
ENSAOCG00000002447	vars	99	81.045	ENSSFOG00015014272	vars	99	85.976	Scleropages_formosus
ENSAOCG00000002447	vars	99	90.055	ENSSMAG00000009596	vars	99	90.055	Scophthalmus_maximus
ENSAOCG00000002447	vars	99	92.717	ENSSDUG00000014177	vars	100	92.874	Seriola_dumerili
ENSAOCG00000002447	vars	99	92.169	ENSSLDG00000025316	vars	100	92.326	Seriola_lalandi_dorsalis
ENSAOCG00000002447	vars	99	94.969	ENSSPAG00000017068	vars	100	94.969	Stegastes_partitus
ENSAOCG00000002447	vars	100	63.994	ENSSSCG00000038950	VARS	100	64.496	Sus_scrofa
ENSAOCG00000002447	vars	82	82.549	ENSTRUG00000012307	vars	98	82.520	Takifugu_rubripes
ENSAOCG00000002447	vars	99	87.049	ENSTNIG00000008011	vars	100	87.049	Tetraodon_nigroviridis
ENSAOCG00000002447	vars	100	59.638	ENSTTRG00000014128	VARS	100	59.638	Tursiops_truncatus
ENSAOCG00000002447	vars	100	62.383	ENSUAMG00000010424	VARS	100	63.424	Ursus_americanus
ENSAOCG00000002447	vars	100	58.938	ENSUMAG00000013486	VARS	100	60.016	Ursus_maritimus
ENSAOCG00000002447	vars	100	64.841	ENSVVUG00000021323	VARS	100	64.841	Vulpes_vulpes
ENSAOCG00000002447	vars	100	64.269	ENSXETG00000024076	vars	100	65.089	Xenopus_tropicalis
ENSAOCG00000002447	vars	100	88.010	ENSXCOG00000019172	vars	100	88.688	Xiphophorus_couchianus
ENSAOCG00000002447	vars	99	90.659	ENSXMAG00000010927	vars	100	90.659	Xiphophorus_maculatus