EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAOCG00000002630 (Gene tree)
Gene ID: 111586291
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 17314 bases
Position: chrNXFZ01004826.1:40424-57737
Accession: 111586291
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000023529	EST1	PF10374.9	5.4e-13	1	1
ENSAOCP00000023529	EST1_DNA_bind	PF10373.9	1.9e-56	1	1
ENSAOCP00000023529	PIN_4	PF13638.6	6.7e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000005121	-	6951	XM_023295997	ENSAOCP00000023529	1647 (aa)	XP_023151765	UPI000C3078BB

Gene Model

Click here to download ENSAOCG00000002630's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000002630's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000002630	smg6	74	55.078	ENSG00000070366	SMG6	100	57.770	Homo_sapiens
ENSAOCG00000002630	smg6	100	95.932	ENSAPOG00000019448	smg6	100	95.932	Acanthochromis_polyacanthus
ENSAOCG00000002630	smg6	74	55.156	ENSAMEG00000007632	SMG6	83	54.882	Ailuropoda_melanoleuca
ENSAOCG00000002630	smg6	93	80.284	ENSACIG00000012997	smg6	100	79.832	Amphilophus_citrinellus
ENSAOCG00000002630	smg6	100	99.089	ENSAPEG00000019101	smg6	100	99.089	Amphiprion_percula
ENSAOCG00000002630	smg6	100	79.428	ENSATEG00000006483	smg6	100	79.070	Anabas_testudineus
ENSAOCG00000002630	smg6	64	48.545	ENSACAG00000011783	SMG6	72	52.863	Anolis_carolinensis
ENSAOCG00000002630	smg6	74	55.121	ENSANAG00000035760	SMG6	71	59.670	Aotus_nancymaae
ENSAOCG00000002630	smg6	100	81.112	ENSACLG00000005288	smg6	100	81.367	Astatotilapia_calliptera
ENSAOCG00000002630	smg6	72	69.350	ENSAMXG00000017326	smg6	98	68.258	Astyanax_mexicanus
ENSAOCG00000002630	smg6	74	55.391	ENSCJAG00000001820	SMG6	71	59.578	Callithrix_jacchus
ENSAOCG00000002630	smg6	74	55.234	ENSCAFG00000019260	SMG6	83	55.197	Canis_familiaris
ENSAOCG00000002630	smg6	74	55.234	ENSCAFG00020009770	SMG6	83	55.197	Canis_lupus_dingo
ENSAOCG00000002630	smg6	74	55.356	ENSCHIG00000021998	SMG6	87	54.058	Capra_hircus
ENSAOCG00000002630	smg6	74	54.914	ENSTSYG00000003406	SMG6	100	57.221	Carlito_syrichta
ENSAOCG00000002630	smg6	67	53.182	ENSCAPG00000016197	SMG6	81	48.864	Cavia_aperea
ENSAOCG00000002630	smg6	74	54.396	ENSCPOG00000014878	SMG6	92	56.332	Cavia_porcellus
ENSAOCG00000002630	smg6	75	54.385	ENSCCAG00000035801	SMG6	71	59.487	Cebus_capucinus
ENSAOCG00000002630	smg6	74	55.000	ENSCATG00000031956	SMG6	71	59.487	Cercocebus_atys
ENSAOCG00000002630	smg6	74	54.503	ENSCLAG00000006748	SMG6	91	55.895	Chinchilla_lanigera
ENSAOCG00000002630	smg6	74	55.312	ENSCSAG00000013800	SMG6	71	59.762	Chlorocebus_sabaeus
ENSAOCG00000002630	smg6	79	52.759	ENSCPBG00000020369	SMG6	71	58.577	Chrysemys_picta_bellii
ENSAOCG00000002630	smg6	74	54.922	ENSCANG00000031764	SMG6	100	58.135	Colobus_angolensis_palliatus
ENSAOCG00000002630	smg6	74	50.353	ENSCGRG00000007782	Smg6	72	54.270	Cricetulus_griseus_crigri
ENSAOCG00000002630	smg6	95	72.320	ENSCSEG00000012757	smg6	100	71.780	Cynoglossus_semilaevis
ENSAOCG00000002630	smg6	100	72.005	ENSCVAG00000012789	smg6	100	71.325	Cyprinodon_variegatus
ENSAOCG00000002630	smg6	100	58.384	ENSDARG00000100481	smg6	100	57.022	Danio_rerio
ENSAOCG00000002630	smg6	74	54.375	ENSDNOG00000048283	SMG6	71	59.028	Dasypus_novemcinctus
ENSAOCG00000002630	smg6	74	51.054	ENSDORG00000016614	Smg6	92	56.332	Dipodomys_ordii
ENSAOCG00000002630	smg6	72	90.000	ENSETEG00000016790	SMG6	59	90.000	Echinops_telfairi
ENSAOCG00000002630	smg6	60	47.498	ENSEBUG00000005059	smg6	63	46.798	Eptatretus_burgeri
ENSAOCG00000002630	smg6	74	54.821	ENSEASG00005009318	SMG6	86	53.253	Equus_asinus_asinus
ENSAOCG00000002630	smg6	74	54.907	ENSECAG00000006519	SMG6	86	53.253	Equus_caballus
ENSAOCG00000002630	smg6	74	47.142	ENSEEUG00000003493	SMG6	82	57.273	Erinaceus_europaeus
ENSAOCG00000002630	smg6	97	65.522	ENSELUG00000005934	smg6	96	70.470	Esox_lucius
ENSAOCG00000002630	smg6	74	54.891	ENSFCAG00000028817	SMG6	83	54.961	Felis_catus
ENSAOCG00000002630	smg6	79	54.096	ENSFALG00000006538	SMG6	90	53.150	Ficedula_albicollis
ENSAOCG00000002630	smg6	74	54.766	ENSFDAG00000015106	SMG6	91	55.459	Fukomys_damarensis
ENSAOCG00000002630	smg6	100	72.246	ENSFHEG00000013282	smg6	100	71.377	Fundulus_heteroclitus
ENSAOCG00000002630	smg6	78	53.898	ENSGALG00000003108	SMG6	85	52.801	Gallus_gallus
ENSAOCG00000002630	smg6	100	73.105	ENSGAFG00000000379	smg6	100	72.727	Gambusia_affinis
ENSAOCG00000002630	smg6	90	79.033	ENSGACG00000020521	smg6	100	77.712	Gasterosteus_aculeatus
ENSAOCG00000002630	smg6	84	49.966	ENSGAGG00000025617	SMG6	96	49.416	Gopherus_agassizii
ENSAOCG00000002630	smg6	74	55.078	ENSGGOG00000017156	SMG6	71	59.578	Gorilla_gorilla
ENSAOCG00000002630	smg6	100	81.351	ENSHBUG00000021311	smg6	100	80.395	Haplochromis_burtoni
ENSAOCG00000002630	smg6	77	53.759	ENSHGLG00000012882	SMG6	91	55.895	Heterocephalus_glaber_female
ENSAOCG00000002630	smg6	77	53.910	ENSHGLG00100017815	SMG6	91	55.895	Heterocephalus_glaber_male
ENSAOCG00000002630	smg6	65	71.918	ENSHCOG00000008761	smg6	83	72.108	Hippocampus_comes
ENSAOCG00000002630	smg6	100	54.841	ENSIPUG00000012493	smg6	100	54.358	Ictalurus_punctatus
ENSAOCG00000002630	smg6	74	54.836	ENSSTOG00000028127	SMG6	92	55.895	Ictidomys_tridecemlineatus
ENSAOCG00000002630	smg6	55	51.844	ENSJJAG00000015367	Smg6	61	56.297	Jaculus_jaculus
ENSAOCG00000002630	smg6	100	75.598	ENSKMAG00000000279	smg6	100	75.344	Kryptolebias_marmoratus
ENSAOCG00000002630	smg6	100	78.375	ENSLBEG00000002184	smg6	100	78.004	Labrus_bergylta
ENSAOCG00000002630	smg6	67	66.904	ENSLOCG00000006448	smg6	99	56.737	Lepisosteus_oculatus
ENSAOCG00000002630	smg6	74	54.419	ENSLAFG00000001261	SMG6	71	59.141	Loxodonta_africana
ENSAOCG00000002630	smg6	74	55.312	ENSMFAG00000003394	SMG6	71	59.762	Macaca_fascicularis
ENSAOCG00000002630	smg6	74	55.234	ENSMMUG00000023161	SMG6	71	59.670	Macaca_mulatta
ENSAOCG00000002630	smg6	74	52.858	ENSMNEG00000044592	SMG6	73	56.565	Macaca_nemestrina
ENSAOCG00000002630	smg6	70	59.683	ENSMLEG00000029353	SMG6	71	63.311	Mandrillus_leucophaeus
ENSAOCG00000002630	smg6	100	81.134	ENSMAMG00000020119	smg6	100	81.660	Mastacembelus_armatus
ENSAOCG00000002630	smg6	100	80.932	ENSMZEG00005024736	smg6	100	80.203	Maylandia_zebra
ENSAOCG00000002630	smg6	54	51.603	ENSMGAG00000005401	-	82	50.959	Meleagris_gallopavo
ENSAOCG00000002630	smg6	74	55.121	ENSMICG00000012913	SMG6	83	54.849	Microcebus_murinus
ENSAOCG00000002630	smg6	100	72.595	ENSMMOG00000010883	smg6	100	72.502	Mola_mola
ENSAOCG00000002630	smg6	74	55.512	ENSMODG00000010622	SMG6	83	54.710	Monodelphis_domestica
ENSAOCG00000002630	smg6	100	79.964	ENSMALG00000001106	smg6	100	79.486	Monopterus_albus
ENSAOCG00000002630	smg6	74	54.382	MGP_CAROLIEiJ_G0016729	Smg6	96	65.352	Mus_caroli
ENSAOCG00000002630	smg6	74	54.411	ENSMUSG00000038290	Smg6	96	65.915	Mus_musculus
ENSAOCG00000002630	smg6	74	54.062	MGP_PahariEiJ_G0017866	Smg6	96	65.352	Mus_pahari
ENSAOCG00000002630	smg6	74	54.333	MGP_SPRETEiJ_G0017572	Smg6	96	65.634	Mus_spretus
ENSAOCG00000002630	smg6	74	54.460	ENSNGAG00000007287	Smg6	92	55.895	Nannospalax_galili
ENSAOCG00000002630	smg6	98	77.689	ENSNBRG00000009511	smg6	99	79.499	Neolamprologus_brichardi
ENSAOCG00000002630	smg6	74	55.078	ENSNLEG00000017171	SMG6	100	57.770	Nomascus_leucogenys
ENSAOCG00000002630	smg6	74	54.624	ENSMEUG00000015804	SMG6	85	54.124	Notamacropus_eugenii
ENSAOCG00000002630	smg6	51	62.632	ENSOPRG00000000579	SMG6	82	61.458	Ochotona_princeps
ENSAOCG00000002630	smg6	74	48.941	ENSODEG00000008038	SMG6	81	54.070	Octodon_degus
ENSAOCG00000002630	smg6	100	81.470	ENSONIG00000005594	smg6	100	81.470	Oreochromis_niloticus
ENSAOCG00000002630	smg6	77	53.771	ENSOCUG00000013018	SMG6	87	53.788	Oryctolagus_cuniculus
ENSAOCG00000002630	smg6	100	71.087	ENSORLG00000003317	smg6	100	70.848	Oryzias_latipes
ENSAOCG00000002630	smg6	100	71.164	ENSORLG00020015343	smg6	100	71.010	Oryzias_latipes_hni
ENSAOCG00000002630	smg6	100	71.480	ENSORLG00015020454	smg6	100	71.266	Oryzias_latipes_hsok
ENSAOCG00000002630	smg6	100	69.886	ENSOMEG00000010838	smg6	100	70.306	Oryzias_melastigma
ENSAOCG00000002630	smg6	74	54.821	ENSOGAG00000004483	SMG6	74	58.630	Otolemur_garnettii
ENSAOCG00000002630	smg6	74	54.922	ENSPPAG00000043296	SMG6	71	59.395	Pan_paniscus
ENSAOCG00000002630	smg6	74	54.891	ENSPPRG00000014581	SMG6	83	54.961	Panthera_pardus
ENSAOCG00000002630	smg6	74	54.891	ENSPTIG00000008925	SMG6	100	57.952	Panthera_tigris_altaica
ENSAOCG00000002630	smg6	74	55.156	ENSPTRG00000008544	SMG6	100	57.770	Pan_troglodytes
ENSAOCG00000002630	smg6	74	55.234	ENSPANG00000024588	SMG6	71	59.670	Papio_anubis
ENSAOCG00000002630	smg6	72	50.770	ENSPSIG00000006660	SMG6	86	50.576	Pelodiscus_sinensis
ENSAOCG00000002630	smg6	96	80.000	ENSPMGG00000000844	smg6	99	80.381	Periophthalmus_magnuspinnatus
ENSAOCG00000002630	smg6	74	54.937	ENSPEMG00000020707	Smg6	93	55.459	Peromyscus_maniculatus_bairdii
ENSAOCG00000002630	smg6	100	74.172	ENSPFOG00000012035	smg6	100	73.434	Poecilia_formosa
ENSAOCG00000002630	smg6	100	74.399	ENSPLAG00000017660	smg6	100	73.614	Poecilia_latipinna
ENSAOCG00000002630	smg6	100	74.353	ENSPMEG00000000258	smg6	100	73.614	Poecilia_mexicana
ENSAOCG00000002630	smg6	100	73.466	ENSPREG00000010066	smg6	100	72.848	Poecilia_reticulata
ENSAOCG00000002630	smg6	74	50.935	ENSPPYG00000007790	SMG6	71	54.703	Pongo_abelii
ENSAOCG00000002630	smg6	71	59.545	ENSPCAG00000000552	SMG6	67	60.169	Procavia_capensis
ENSAOCG00000002630	smg6	74	54.766	ENSPCOG00000020925	SMG6	71	59.303	Propithecus_coquereli
ENSAOCG00000002630	smg6	70	62.692	ENSPVAG00000002159	SMG6	72	55.179	Pteropus_vampyrus
ENSAOCG00000002630	smg6	93	78.264	ENSPNYG00000024151	smg6	99	79.235	Pundamilia_nyererei
ENSAOCG00000002630	smg6	100	53.557	ENSPNAG00000015480	smg6	100	52.952	Pygocentrus_nattereri
ENSAOCG00000002630	smg6	74	54.496	ENSRNOG00000003041	Smg6	96	66.197	Rattus_norvegicus
ENSAOCG00000002630	smg6	74	55.234	ENSRBIG00000024746	SMG6	71	59.670	Rhinopithecus_bieti
ENSAOCG00000002630	smg6	74	55.234	ENSRROG00000030423	SMG6	100	58.135	Rhinopithecus_roxellana
ENSAOCG00000002630	smg6	74	54.766	ENSSBOG00000022518	SMG6	71	57.470	Saimiri_boliviensis_boliviensis
ENSAOCG00000002630	smg6	74	55.321	ENSSHAG00000010045	SMG6	83	55.020	Sarcophilus_harrisii
ENSAOCG00000002630	smg6	100	52.143	ENSSFOG00015005436	smg6	92	56.298	Scleropages_formosus
ENSAOCG00000002630	smg6	100	78.482	ENSSMAG00000019777	smg6	100	78.110	Scophthalmus_maximus
ENSAOCG00000002630	smg6	100	84.170	ENSSDUG00000016412	smg6	100	83.572	Seriola_dumerili
ENSAOCG00000002630	smg6	91	84.418	ENSSLDG00000020747	smg6	98	83.706	Seriola_lalandi_dorsalis
ENSAOCG00000002630	smg6	79	52.388	ENSSPUG00000007152	SMG6	89	51.929	Sphenodon_punctatus
ENSAOCG00000002630	smg6	100	92.480	ENSSPAG00000015633	smg6	100	92.359	Stegastes_partitus
ENSAOCG00000002630	smg6	78	53.788	ENSTGUG00000005836	SMG6	88	53.525	Taeniopygia_guttata
ENSAOCG00000002630	smg6	94	84.375	ENSTRUG00000000358	smg6	99	84.375	Takifugu_rubripes
ENSAOCG00000002630	smg6	96	75.842	ENSTNIG00000016164	smg6	100	78.637	Tetraodon_nigroviridis
ENSAOCG00000002630	smg6	74	52.784	ENSTBEG00000011424	SMG6	72	56.330	Tupaia_belangeri
ENSAOCG00000002630	smg6	66	56.857	ENSTTRG00000001175	SMG6	62	56.143	Tursiops_truncatus
ENSAOCG00000002630	smg6	74	55.261	ENSUAMG00000025152	SMG6	85	55.170	Ursus_americanus
ENSAOCG00000002630	smg6	74	55.078	ENSUMAG00000009306	SMG6	85	55.186	Ursus_maritimus
ENSAOCG00000002630	smg6	60	95.833	ENSVPAG00000000225	SMG6	70	95.833	Vicugna_pacos
ENSAOCG00000002630	smg6	74	55.805	ENSVVUG00000021727	SMG6	83	54.811	Vulpes_vulpes
ENSAOCG00000002630	smg6	66	54.439	ENSXETG00000023799	SMG6	74	53.826	Xenopus_tropicalis
ENSAOCG00000002630	smg6	98	71.481	ENSXCOG00000009867	smg6	99	70.972	Xiphophorus_couchianus
ENSAOCG00000002630	smg6	100	73.586	ENSXMAG00000010321	smg6	100	72.908	Xiphophorus_maculatus