EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000003133 (Gene tree)
Gene ID: 111574899
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Plus strand
Length: 11599 bases
Position: chrNXFZ01003013.1:261393-272991
Accession: 111574899
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000000298	RRM_1	PF00076.22	2.9e-60	1	4
ENSAOCP00000000298	RRM_1	PF00076.22	2.9e-60	2	4
ENSAOCP00000000298	RRM_1	PF00076.22	2.9e-60	3	4
ENSAOCP00000000298	RRM_1	PF00076.22	2.9e-60	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000015154	-	6166	XM_023279722	ENSAOCP00000000298	709 (aa)	XP_023135490	UPI000C3142F7

Gene Model

Click here to download ENSAOCG00000003133's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000003133's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000003133	ncl	83	39.675	ENSAOCG00000014792	-	61	41.432

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000003133	ncl	58	40.416	ENSAPOG00000014534	-	67	41.432	Acanthochromis_polyacanthus
ENSAOCG00000003133	ncl	100	97.071	ENSAPOG00000023888	ncl	100	97.071	Acanthochromis_polyacanthus
ENSAOCG00000003133	ncl	56	30.641	ENSACIG00000013234	ncl	65	73.412	Amphilophus_citrinellus
ENSAOCG00000003133	ncl	58	39.907	ENSAPEG00000013612	-	60	41.688	Amphiprion_percula
ENSAOCG00000003133	ncl	100	99.017	ENSAPEG00000002769	ncl	100	99.017	Amphiprion_percula
ENSAOCG00000003133	ncl	66	88.172	ENSATEG00000013343	ncl	60	88.863	Anabas_testudineus
ENSAOCG00000003133	ncl	69	42.549	ENSATEG00000019862	-	80	46.154	Anabas_testudineus
ENSAOCG00000003133	ncl	53	63.021	ENSACAG00000001006	-	52	62.924	Anolis_carolinensis
ENSAOCG00000003133	ncl	57	69.756	ENSAMXG00000001647	ncl	81	73.579	Astyanax_mexicanus
ENSAOCG00000003133	ncl	54	45.584	ENSCHIG00000012665	-	53	45.407	Capra_hircus
ENSAOCG00000003133	ncl	89	51.368	ENSCPBG00000016444	-	56	62.368	Chrysemys_picta_bellii
ENSAOCG00000003133	ncl	55	84.814	ENSCSEG00000015089	ncl	57	85.488	Cynoglossus_semilaevis
ENSAOCG00000003133	ncl	52	84.677	ENSCVAG00000012600	ncl	61	82.938	Cyprinodon_variegatus
ENSAOCG00000003133	ncl	60	75.294	ENSDARG00000002710	ncl	83	77.994	Danio_rerio
ENSAOCG00000003133	ncl	56	45.137	ENSDNOG00000031611	-	67	46.154	Dasypus_novemcinctus
ENSAOCG00000003133	ncl	58	48.346	ENSDNOG00000040257	-	72	44.884	Dasypus_novemcinctus
ENSAOCG00000003133	ncl	68	46.640	ENSEBUG00000016173	ncl	51	48.507	Eptatretus_burgeri
ENSAOCG00000003133	ncl	60	74.648	ENSELUG00000006033	ncl	56	75.397	Esox_lucius
ENSAOCG00000003133	ncl	66	48.401	ENSELUG00000022826	-	80	52.815	Esox_lucius
ENSAOCG00000003133	ncl	52	59.318	ENSFALG00000007592	-	54	59.318	Ficedula_albicollis
ENSAOCG00000003133	ncl	53	80.000	ENSFHEG00000018000	ncl	65	79.621	Fundulus_heteroclitus
ENSAOCG00000003133	ncl	68	69.554	ENSGMOG00000001341	ncl	59	69.251	Gadus_morhua
ENSAOCG00000003133	ncl	52	60.053	ENSGALG00000032930	NCL	55	60.053	Gallus_gallus
ENSAOCG00000003133	ncl	65	78.017	ENSGAFG00000015375	ncl	58	74.126	Gambusia_affinis
ENSAOCG00000003133	ncl	89	72.727	ENSGACG00000008970	ncl	61	82.133	Gasterosteus_aculeatus
ENSAOCG00000003133	ncl	89	51.372	ENSGAGG00000013330	-	56	62.533	Gopherus_agassizii
ENSAOCG00000003133	ncl	68	80.924	ENSHCOG00000010234	ncl	60	83.879	Hippocampus_comes
ENSAOCG00000003133	ncl	52	75.817	ENSIPUG00000024556	ncl	81	76.144	Ictalurus_punctatus
ENSAOCG00000003133	ncl	60	83.175	ENSKMAG00000008111	ncl	54	86.631	Kryptolebias_marmoratus
ENSAOCG00000003133	ncl	60	87.915	ENSLBEG00000019073	ncl	56	90.133	Labrus_bergylta
ENSAOCG00000003133	ncl	51	43.158	ENSLBEG00000014278	-	82	43.443	Labrus_bergylta
ENSAOCG00000003133	ncl	64	40.977	ENSLBEG00000007915	-	66	43.990	Labrus_bergylta
ENSAOCG00000003133	ncl	59	62.676	ENSLACG00000009328	ncl	56	64.987	Latimeria_chalumnae
ENSAOCG00000003133	ncl	56	51.238	ENSLACG00000022167	-	79	52.941	Latimeria_chalumnae
ENSAOCG00000003133	ncl	50	71.788	ENSLOCG00000004828	ncl	57	70.118	Lepisosteus_oculatus
ENSAOCG00000003133	ncl	89	79.843	ENSMAMG00000002086	ncl	51	90.284	Mastacembelus_armatus
ENSAOCG00000003133	ncl	55	41.505	ENSMAMG00000003479	-	69	41.451	Mastacembelus_armatus
ENSAOCG00000003133	ncl	52	59.239	ENSMGAG00000008147	-	88	59.239	Meleagris_gallopavo
ENSAOCG00000003133	ncl	53	87.059	ENSMMOG00000008553	ncl	84	90.196	Mola_mola
ENSAOCG00000003133	ncl	93	78.964	ENSMALG00000014827	ncl	62	85.678	Monopterus_albus
ENSAOCG00000003133	ncl	52	59.788	ENSMEUG00000012335	-	54	59.894	Notamacropus_eugenii
ENSAOCG00000003133	ncl	52	83.065	ENSONIG00000012508	ncl	59	81.043	Oreochromis_niloticus
ENSAOCG00000003133	ncl	53	39.578	ENSONIG00000010631	-	97	39.733	Oreochromis_niloticus
ENSAOCG00000003133	ncl	52	61.658	ENSOANG00000008732	-	61	62.176	Ornithorhynchus_anatinus
ENSAOCG00000003133	ncl	55	38.035	ENSORLG00000004645	-	83	39.164	Oryzias_latipes
ENSAOCG00000003133	ncl	50	87.989	ENSORLG00000007055	ncl	61	79.412	Oryzias_latipes
ENSAOCG00000003133	ncl	55	38.500	ENSORLG00020003497	-	74	39.164	Oryzias_latipes_hni
ENSAOCG00000003133	ncl	60	80.569	ENSORLG00015013815	ncl	87	86.275	Oryzias_latipes_hsok
ENSAOCG00000003133	ncl	55	38.750	ENSORLG00015006613	-	77	39.164	Oryzias_latipes_hsok
ENSAOCG00000003133	ncl	55	39.552	ENSOMEG00000015864	-	82	40.209	Oryzias_melastigma
ENSAOCG00000003133	ncl	53	86.400	ENSOMEG00000020786	ncl	66	84.834	Oryzias_melastigma
ENSAOCG00000003133	ncl	60	78.353	ENSPKIG00000002604	ncl	53	81.016	Paramormyrops_kingsleyae
ENSAOCG00000003133	ncl	66	57.606	ENSPSIG00000002361	-	54	61.458	Pelodiscus_sinensis
ENSAOCG00000003133	ncl	52	82.736	ENSPMGG00000004709	ncl	84	82.736	Periophthalmus_magnuspinnatus
ENSAOCG00000003133	ncl	52	59.008	ENSPCIG00000003293	-	53	58.961	Phascolarctos_cinereus
ENSAOCG00000003133	ncl	60	81.517	ENSPNYG00000020494	ncl	60	81.280	Pundamilia_nyererei
ENSAOCG00000003133	ncl	59	71.395	ENSPNAG00000006192	ncl	52	73.545	Pygocentrus_nattereri
ENSAOCG00000003133	ncl	57	51.683	ENSSHAG00000002702	-	59	54.450	Sarcophilus_harrisii
ENSAOCG00000003133	ncl	63	74.058	ENSSFOG00015008583	ncl	58	81.016	Scleropages_formosus
ENSAOCG00000003133	ncl	60	86.118	ENSSMAG00000021241	ncl	60	86.118	Scophthalmus_maximus
ENSAOCG00000003133	ncl	64	40.080	ENSSMAG00000007582	-	61	45.669	Scophthalmus_maximus
ENSAOCG00000003133	ncl	81	93.750	ENSSDUG00000006128	ncl	86	93.067	Seriola_dumerili
ENSAOCG00000003133	ncl	65	40.084	ENSSDUG00000010922	-	82	43.636	Seriola_dumerili
ENSAOCG00000003133	ncl	57	43.210	ENSSLDG00000015784	-	83	43.603	Seriola_lalandi_dorsalis
ENSAOCG00000003133	ncl	69	88.272	ENSSLDG00000002012	ncl	60	90.521	Seriola_lalandi_dorsalis
ENSAOCG00000003133	ncl	60	57.675	ENSSPUG00000008244	-	56	60.459	Sphenodon_punctatus
ENSAOCG00000003133	ncl	57	42.892	ENSSPAG00000001859	-	61	43.005	Stegastes_partitus
ENSAOCG00000003133	ncl	76	58.568	ENSTGUG00000009782	-	60	60.209	Taeniopygia_guttata
ENSAOCG00000003133	ncl	60	72.365	ENSTRUG00000008185	ncl	54	84.282	Takifugu_rubripes
ENSAOCG00000003133	ncl	52	62.234	ENSXETG00000009517	ncl	54	63.032	Xenopus_tropicalis
ENSAOCG00000003133	ncl	53	40.979	ENSXCOG00000007369	-	89	41.316	Xiphophorus_couchianus
ENSAOCG00000003133	ncl	54	66.133	ENSXCOG00000003524	ncl	88	66.400	Xiphophorus_couchianus