EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000003949 (Gene tree)
Gene ID: 111564416
Gene Symbol: -
Alias: -
Full Name: DNA-directed RNA polymerase III subunit RPC1-like
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 25854 bases
Position: chrNXFZ01006333.1:22356-48209
Accession: 111564416
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000001003	RNA_pol_Rpb1_5	PF04998.17	1.4e-87	1	1
ENSAOCP00000001003	RNA_pol_Rpb1_4	PF05000.17	8.2e-32	1	1
ENSAOCP00000001003	RNA_pol_Rpb1_2	PF00623.20	1.4e-72	1	1
ENSAOCP00000001003	RNA_pol_Rpb1_3	PF04983.18	7.6e-41	1	1
ENSAOCP00000001003	RNA_pol_Rpb1_1	PF04997.12	2.3e-78	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000013971	-	4089	XM_023263963	ENSAOCP00000001003	1362 (aa)	XP_023119731	-

Gene Model

Click here to download ENSAOCG00000003949's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000003949's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000003949	-	77	31.381	ENSAOCG00000017336	polr1a	65	37.195
ENSAOCG00000003949	-	89	36.976	ENSAOCG00000004255	polr2a	69	37.199
ENSAOCG00000003949	-	100	96.619	ENSAOCG00000002071	polr3a	100	96.619

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000003949	-	100	87.194	ENSG00000148606	POLR3A	100	87.194	Homo_sapiens
ENSAOCG00000003949	-	62	94.077	ENSAPOG00000022727	polr3a	99	94.077	Acanthochromis_polyacanthus
ENSAOCG00000003949	-	100	87.006	ENSAMEG00000017801	POLR3A	100	87.006	Ailuropoda_melanoleuca
ENSAOCG00000003949	-	93	93.692	ENSACIG00000024504	polr3a	97	93.692	Amphilophus_citrinellus
ENSAOCG00000003949	-	100	96.403	ENSAPEG00000001966	-	100	96.403	Amphiprion_percula
ENSAOCG00000003949	-	100	96.619	ENSAPEG00000013351	polr3a	100	96.619	Amphiprion_percula
ENSAOCG00000003949	-	100	93.453	ENSATEG00000023277	polr3a	100	93.453	Anabas_testudineus
ENSAOCG00000003949	-	99	87.418	ENSAPLG00000015878	POLR3A	99	87.418	Anas_platyrhynchos
ENSAOCG00000003949	-	93	86.249	ENSACAG00000007985	POLR3A	99	86.249	Anolis_carolinensis
ENSAOCG00000003949	-	100	84.626	ENSANAG00000028922	POLR3A	100	84.626	Aotus_nancymaae
ENSAOCG00000003949	-	100	93.237	ENSACLG00000005914	polr3a	100	93.237	Astatotilapia_calliptera
ENSAOCG00000003949	-	100	85.827	ENSAMXG00000018852	polr3a	100	85.827	Astyanax_mexicanus
ENSAOCG00000003949	-	100	87.266	ENSBTAG00000013259	POLR3A	100	87.266	Bos_taurus
ENSAOCG00000003949	-	98	55.348	WBGene00004411	rpc-1	99	55.348	Caenorhabditis_elegans
ENSAOCG00000003949	-	100	86.978	ENSCJAG00000001015	POLR3A	100	86.978	Callithrix_jacchus
ENSAOCG00000003949	-	100	87.122	ENSCAFG00000015546	POLR3A	100	87.122	Canis_familiaris
ENSAOCG00000003949	-	100	87.122	ENSCAFG00020014711	POLR3A	100	87.122	Canis_lupus_dingo
ENSAOCG00000003949	-	100	86.835	ENSCHIG00000000352	POLR3A	100	86.835	Capra_hircus
ENSAOCG00000003949	-	100	86.763	ENSTSYG00000006671	POLR3A	100	86.763	Carlito_syrichta
ENSAOCG00000003949	-	99	86.473	ENSCAPG00000016031	POLR3A	100	86.473	Cavia_aperea
ENSAOCG00000003949	-	100	86.547	ENSCPOG00000022387	POLR3A	100	86.547	Cavia_porcellus
ENSAOCG00000003949	-	100	85.468	ENSCCAG00000032995	POLR3A	100	85.468	Cebus_capucinus
ENSAOCG00000003949	-	100	87.194	ENSCATG00000035842	POLR3A	100	87.194	Cercocebus_atys
ENSAOCG00000003949	-	100	86.835	ENSCLAG00000009629	POLR3A	100	86.835	Chinchilla_lanigera
ENSAOCG00000003949	-	100	87.194	ENSCSAG00000009292	POLR3A	100	87.194	Chlorocebus_sabaeus
ENSAOCG00000003949	-	85	73.142	ENSCHOG00000008368	POLR3A	100	73.142	Choloepus_hoffmanni
ENSAOCG00000003949	-	99	87.401	ENSCPBG00000002079	POLR3A	99	87.401	Chrysemys_picta_bellii
ENSAOCG00000003949	-	99	67.003	ENSCSAVG00000009925	-	99	67.003	Ciona_savignyi
ENSAOCG00000003949	-	87	83.333	ENSCANG00000041071	POLR3A	98	86.709	Colobus_angolensis_palliatus
ENSAOCG00000003949	-	78	89.020	ENSCGRG00001015599	-	92	89.020	Cricetulus_griseus_chok1gshd
ENSAOCG00000003949	-	87	88.048	ENSCGRG00000001019	Polr3a	98	88.048	Cricetulus_griseus_crigri
ENSAOCG00000003949	-	100	92.518	ENSCSEG00000016653	polr3a	100	92.518	Cynoglossus_semilaevis
ENSAOCG00000003949	-	100	92.230	ENSCVAG00000023049	polr3a	100	92.230	Cyprinodon_variegatus
ENSAOCG00000003949	-	99	88.473	ENSDARG00000102569	polr3a	99	88.473	Danio_rerio
ENSAOCG00000003949	-	100	86.259	ENSDNOG00000010194	POLR3A	100	86.259	Dasypus_novemcinctus
ENSAOCG00000003949	-	100	87.194	ENSDORG00000000184	Polr3a	100	87.194	Dipodomys_ordii
ENSAOCG00000003949	-	99	55.790	FBgn0030687	CG17209	99	55.790	Drosophila_melanogaster
ENSAOCG00000003949	-	87	86.235	ENSETEG00000007477	POLR3A	89	86.235	Echinops_telfairi
ENSAOCG00000003949	-	59	74.091	ENSEBUG00000013761	polr3a	98	74.091	Eptatretus_burgeri
ENSAOCG00000003949	-	100	87.194	ENSEASG00005023053	POLR3A	100	87.194	Equus_asinus_asinus
ENSAOCG00000003949	-	96	87.109	ENSECAG00000019416	POLR3A	100	86.760	Equus_caballus
ENSAOCG00000003949	-	96	82.625	ENSEEUG00000001774	POLR3A	100	82.625	Erinaceus_europaeus
ENSAOCG00000003949	-	100	87.868	ENSELUG00000014016	polr3a	100	87.868	Esox_lucius
ENSAOCG00000003949	-	100	87.338	ENSFCAG00000000843	POLR3A	100	87.338	Felis_catus
ENSAOCG00000003949	-	100	87.203	ENSFALG00000006913	POLR3A	100	87.203	Ficedula_albicollis
ENSAOCG00000003949	-	100	86.619	ENSFDAG00000007813	POLR3A	100	86.619	Fukomys_damarensis
ENSAOCG00000003949	-	94	91.316	ENSFHEG00000011922	polr3a	99	91.316	Fundulus_heteroclitus
ENSAOCG00000003949	-	100	85.067	ENSGMOG00000000291	polr3a	99	85.067	Gadus_morhua
ENSAOCG00000003949	-	100	87.626	ENSGALG00000004947	POLR3A	100	87.626	Gallus_gallus
ENSAOCG00000003949	-	100	92.158	ENSGAFG00000005112	polr3a	100	92.158	Gambusia_affinis
ENSAOCG00000003949	-	100	92.086	ENSGACG00000002304	polr3a	100	92.086	Gasterosteus_aculeatus
ENSAOCG00000003949	-	95	87.055	ENSGAGG00000010386	POLR3A	98	87.055	Gopherus_agassizii
ENSAOCG00000003949	-	99	86.127	ENSGGOG00000027729	POLR3A	100	87.745	Gorilla_gorilla
ENSAOCG00000003949	-	100	93.237	ENSHBUG00000018098	polr3a	100	93.237	Haplochromis_burtoni
ENSAOCG00000003949	-	100	86.619	ENSHGLG00000017899	POLR3A	100	86.619	Heterocephalus_glaber_female
ENSAOCG00000003949	-	100	86.619	ENSHGLG00100008483	POLR3A	100	86.619	Heterocephalus_glaber_male
ENSAOCG00000003949	-	100	91.583	ENSHCOG00000001075	polr3a	100	91.583	Hippocampus_comes
ENSAOCG00000003949	-	100	87.122	ENSSTOG00000012983	POLR3A	100	87.122	Ictidomys_tridecemlineatus
ENSAOCG00000003949	-	100	92.158	ENSKMAG00000015290	polr3a	100	92.158	Kryptolebias_marmoratus
ENSAOCG00000003949	-	99	91.577	ENSLBEG00000017214	polr3a	99	91.577	Labrus_bergylta
ENSAOCG00000003949	-	96	84.758	ENSLACG00000018557	POLR3A	99	84.758	Latimeria_chalumnae
ENSAOCG00000003949	-	100	89.160	ENSLOCG00000004942	polr3a	100	89.160	Lepisosteus_oculatus
ENSAOCG00000003949	-	100	85.838	ENSLAFG00000016719	POLR3A	100	85.838	Loxodonta_africana
ENSAOCG00000003949	-	100	87.122	ENSMFAG00000032218	POLR3A	100	87.122	Macaca_fascicularis
ENSAOCG00000003949	-	100	87.122	ENSMMUG00000005514	POLR3A	100	87.122	Macaca_mulatta
ENSAOCG00000003949	-	99	81.668	ENSMNEG00000035163	POLR3A	99	86.833	Macaca_nemestrina
ENSAOCG00000003949	-	100	83.525	ENSMLEG00000030014	POLR3A	98	87.342	Mandrillus_leucophaeus
ENSAOCG00000003949	-	100	93.453	ENSMAMG00000017497	polr3a	100	93.453	Mastacembelus_armatus
ENSAOCG00000003949	-	100	93.237	ENSMZEG00005000576	polr3a	100	93.237	Maylandia_zebra
ENSAOCG00000003949	-	100	70.286	ENSMGAG00000005713	-	100	70.286	Meleagris_gallopavo
ENSAOCG00000003949	-	100	85.108	ENSMAUG00000016247	Polr3a	100	85.108	Mesocricetus_auratus
ENSAOCG00000003949	-	100	87.194	ENSMICG00000005937	POLR3A	100	87.750	Microcebus_murinus
ENSAOCG00000003949	-	100	87.194	ENSMOCG00000012185	Polr3a	100	87.194	Microtus_ochrogaster
ENSAOCG00000003949	-	100	92.590	ENSMMOG00000013822	polr3a	100	92.590	Mola_mola
ENSAOCG00000003949	-	100	87.122	ENSMODG00000001036	POLR3A	100	87.122	Monodelphis_domestica
ENSAOCG00000003949	-	100	92.950	ENSMALG00000001249	polr3a	100	92.950	Monopterus_albus
ENSAOCG00000003949	-	100	87.050	MGP_CAROLIEiJ_G0019016	Polr3a	100	87.050	Mus_caroli
ENSAOCG00000003949	-	100	87.122	ENSMUSG00000025280	Polr3a	100	87.122	Mus_musculus
ENSAOCG00000003949	-	100	87.050	MGP_PahariEiJ_G0030029	Polr3a	100	87.050	Mus_pahari
ENSAOCG00000003949	-	100	85.538	MGP_SPRETEiJ_G0019894	Polr3a	95	97.531	Mus_spretus
ENSAOCG00000003949	-	100	86.591	ENSMPUG00000003790	POLR3A	100	86.591	Mustela_putorius_furo
ENSAOCG00000003949	-	100	86.043	ENSMLUG00000011522	POLR3A	100	86.043	Myotis_lucifugus
ENSAOCG00000003949	-	100	85.755	ENSNGAG00000015863	Polr3a	100	85.755	Nannospalax_galili
ENSAOCG00000003949	-	100	91.223	ENSNBRG00000014262	polr3a	100	91.223	Neolamprologus_brichardi
ENSAOCG00000003949	-	89	82.490	ENSNLEG00000010501	POLR3A	92	82.490	Nomascus_leucogenys
ENSAOCG00000003949	-	99	74.836	ENSMEUG00000012446	POLR3A	100	74.836	Notamacropus_eugenii
ENSAOCG00000003949	-	100	82.374	ENSOPRG00000001880	-	100	82.374	Ochotona_princeps
ENSAOCG00000003949	-	100	86.331	ENSODEG00000015146	POLR3A	100	86.331	Octodon_degus
ENSAOCG00000003949	-	100	93.741	ENSONIG00000016129	polr3a	100	93.741	Oreochromis_niloticus
ENSAOCG00000003949	-	98	86.340	ENSOANG00000007013	POLR3A	100	86.340	Ornithorhynchus_anatinus
ENSAOCG00000003949	-	100	86.835	ENSOCUG00000012450	POLR3A	100	86.835	Oryctolagus_cuniculus
ENSAOCG00000003949	-	100	92.734	ENSORLG00000008958	polr3a	100	92.734	Oryzias_latipes
ENSAOCG00000003949	-	100	90.432	ENSORLG00020007525	polr3a	98	92.846	Oryzias_latipes_hni
ENSAOCG00000003949	-	100	92.734	ENSORLG00015006633	polr3a	100	92.734	Oryzias_latipes_hsok
ENSAOCG00000003949	-	100	92.086	ENSOMEG00000012865	polr3a	100	92.086	Oryzias_melastigma
ENSAOCG00000003949	-	100	86.691	ENSOGAG00000010995	POLR3A	100	86.691	Otolemur_garnettii
ENSAOCG00000003949	-	100	86.853	ENSOARG00000009656	POLR3A	100	86.853	Ovis_aries
ENSAOCG00000003949	-	100	87.338	ENSPPRG00000002128	POLR3A	100	87.338	Panthera_pardus
ENSAOCG00000003949	-	100	87.338	ENSPTIG00000020916	POLR3A	100	87.338	Panthera_tigris_altaica
ENSAOCG00000003949	-	100	87.266	ENSPTRG00000002664	POLR3A	100	87.266	Pan_troglodytes
ENSAOCG00000003949	-	100	87.122	ENSPANG00000022508	POLR3A	100	87.122	Papio_anubis
ENSAOCG00000003949	-	100	89.424	ENSPKIG00000008140	polr3a	100	89.853	Paramormyrops_kingsleyae
ENSAOCG00000003949	-	98	87.290	ENSPSIG00000002092	POLR3A	100	87.290	Pelodiscus_sinensis
ENSAOCG00000003949	-	100	86.978	ENSPEMG00000006768	Polr3a	100	86.978	Peromyscus_maniculatus_bairdii
ENSAOCG00000003949	-	100	87.122	ENSPCIG00000015842	POLR3A	100	87.122	Phascolarctos_cinereus
ENSAOCG00000003949	-	54	92.483	ENSPFOG00000006458	polr3a	100	92.483	Poecilia_formosa
ENSAOCG00000003949	-	100	92.590	ENSPLAG00000000997	polr3a	100	92.590	Poecilia_latipinna
ENSAOCG00000003949	-	100	92.518	ENSPMEG00000006821	polr3a	100	92.518	Poecilia_mexicana
ENSAOCG00000003949	-	100	92.518	ENSPREG00000002385	polr3a	100	92.518	Poecilia_reticulata
ENSAOCG00000003949	-	93	86.754	ENSPPYG00000002305	POLR3A	99	86.754	Pongo_abelii
ENSAOCG00000003949	-	84	75.191	ENSPCAG00000005690	POLR3A	87	75.191	Procavia_capensis
ENSAOCG00000003949	-	100	87.050	ENSPCOG00000028311	POLR3A	100	87.050	Propithecus_coquereli
ENSAOCG00000003949	-	100	86.115	ENSPVAG00000015553	POLR3A	100	86.115	Pteropus_vampyrus
ENSAOCG00000003949	-	100	93.309	ENSPNYG00000020987	polr3a	100	93.309	Pundamilia_nyererei
ENSAOCG00000003949	-	99	84.942	ENSPNAG00000006629	polr3a	99	84.942	Pygocentrus_nattereri
ENSAOCG00000003949	-	100	87.050	ENSRNOG00000010008	Polr3a	100	87.050	Rattus_norvegicus
ENSAOCG00000003949	-	100	83.525	ENSRBIG00000034967	POLR3A	98	87.342	Rhinopithecus_bieti
ENSAOCG00000003949	-	100	87.122	ENSRROG00000025527	POLR3A	100	87.122	Rhinopithecus_roxellana
ENSAOCG00000003949	-	97	48.609	YOR116C	RPO31	98	48.609	Saccharomyces_cerevisiae
ENSAOCG00000003949	-	100	87.122	ENSSBOG00000022199	POLR3A	100	87.122	Saimiri_boliviensis_boliviensis
ENSAOCG00000003949	-	100	87.050	ENSSHAG00000007588	POLR3A	94	87.050	Sarcophilus_harrisii
ENSAOCG00000003949	-	100	90.072	ENSSFOG00015014357	polr3a	100	90.072	Scleropages_formosus
ENSAOCG00000003949	-	100	92.806	ENSSMAG00000001780	polr3a	100	92.806	Scophthalmus_maximus
ENSAOCG00000003949	-	100	94.101	ENSSDUG00000019840	polr3a	100	94.101	Seriola_dumerili
ENSAOCG00000003949	-	100	94.101	ENSSLDG00000023908	polr3a	100	94.101	Seriola_lalandi_dorsalis
ENSAOCG00000003949	-	69	89.655	ENSSARG00000009916	POLR3A	89	89.655	Sorex_araneus
ENSAOCG00000003949	-	100	85.396	ENSSPUG00000013209	POLR3A	100	85.396	Sphenodon_punctatus
ENSAOCG00000003949	-	100	95.180	ENSSPAG00000017712	polr3a	100	95.180	Stegastes_partitus
ENSAOCG00000003949	-	100	87.122	ENSSSCG00000010327	POLR3A	100	90.426	Sus_scrofa
ENSAOCG00000003949	-	100	87.410	ENSTGUG00000006423	-	100	87.410	Taeniopygia_guttata
ENSAOCG00000003949	-	100	92.086	ENSTRUG00000013488	polr3a	100	92.086	Takifugu_rubripes
ENSAOCG00000003949	-	100	92.026	ENSTNIG00000013151	polr3a	100	92.026	Tetraodon_nigroviridis
ENSAOCG00000003949	-	71	91.489	ENSTBEG00000015288	POLR3A	75	91.489	Tupaia_belangeri
ENSAOCG00000003949	-	100	80.647	ENSTTRG00000007817	POLR3A	100	80.647	Tursiops_truncatus
ENSAOCG00000003949	-	100	84.892	ENSUAMG00000011283	POLR3A	100	84.892	Ursus_americanus
ENSAOCG00000003949	-	100	87.194	ENSUMAG00000013913	POLR3A	100	87.194	Ursus_maritimus
ENSAOCG00000003949	-	95	85.714	ENSVPAG00000003285	POLR3A	96	85.714	Vicugna_pacos
ENSAOCG00000003949	-	100	87.122	ENSVVUG00000025523	POLR3A	100	87.122	Vulpes_vulpes
ENSAOCG00000003949	-	86	87.302	ENSXETG00000018101	polr3a	100	87.302	Xenopus_tropicalis
ENSAOCG00000003949	-	100	92.446	ENSXMAG00000015213	polr3a	100	92.446	Xiphophorus_maculatus