EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000004255 (Gene tree)
Gene ID: 111577181
Gene Symbol: polr2a
Alias: im:7136071
Full Name: DNA-directed RNA polymerase II subunit RPB1-like
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 13408 bases
Position: chrNXFZ01003218.1:70007-83414
Accession: 111577181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000001271	RNA_pol_Rpb1_5	PF04998.17	2.1e-101	1	1
ENSAOCP00000001275	RNA_pol_Rpb1_5	PF04998.17	2.4e-101	1	1
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	1	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	2	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	3	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	4	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	5	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	6	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	7	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	8	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	9	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	10	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	11	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	12	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	13	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	14	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	15	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	16	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	17	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	18	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	19	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	20	21
ENSAOCP00000001271	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	21	21
ENSAOCP00000001271	RNA_pol_Rpb1_4	PF05000.17	1.1e-37	1	1
ENSAOCP00000001275	RNA_pol_Rpb1_4	PF05000.17	1.2e-37	1	1
ENSAOCP00000001271	RNA_pol_Rpb1_2	PF00623.20	5.2e-75	1	1
ENSAOCP00000001275	RNA_pol_Rpb1_2	PF00623.20	5.9e-75	1	1
ENSAOCP00000001271	RNA_pol_Rpb1_3	PF04983.18	2.6e-50	1	1
ENSAOCP00000001275	RNA_pol_Rpb1_3	PF04983.18	2.9e-50	1	1
ENSAOCP00000001271	RNA_pol_Rpb1_1	PF04997.12	5e-109	1	1
ENSAOCP00000001275	RNA_pol_Rpb1_1	PF04997.12	9.9e-109	1	1
ENSAOCP00000001271	RNA_pol_Rpb1_7	PF04990.12	5.8e-55	1	1
ENSAOCP00000001275	RNA_pol_Rpb1_7	PF04990.12	6.2e-55	1	1
ENSAOCP00000001271	RNA_pol_Rpb1_6	PF04992.14	2.6e-67	1	1
ENSAOCP00000001275	RNA_pol_Rpb1_6	PF04992.14	2.9e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000013505	-	8564	XM_023283319	ENSAOCP00000001275	1976 (aa)	XP_023139087	-
ENSAOCT00000013533	-	5589	-	ENSAOCP00000001271	1862 (aa)	-	-

Gene Model

Click here to download ENSAOCG00000004255's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000004255's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000004255	polr2a	69	37.199	ENSAOCG00000003949	-	89	36.976
ENSAOCG00000004255	polr2a	60	33.119	ENSAOCG00000017336	polr1a	74	33.119
ENSAOCG00000004255	polr2a	70	38.074	ENSAOCG00000002071	polr3a	91	37.859

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000004255	polr2a	100	98.077	ENSAPOG00000006552	polr2a	100	98.077	Acanthochromis_polyacanthus
ENSAOCG00000004255	polr2a	96	92.069	ENSAMEG00000016265	-	97	92.079	Ailuropoda_melanoleuca
ENSAOCG00000004255	polr2a	100	95.021	ENSACIG00000015982	polr2a	100	96.823	Amphilophus_citrinellus
ENSAOCG00000004255	polr2a	100	95.954	ENSAPEG00000012623	polr2a	100	97.792	Amphiprion_percula
ENSAOCG00000004255	polr2a	100	95.073	ENSATEG00000019644	polr2a	100	96.877	Anabas_testudineus
ENSAOCG00000004255	polr2a	96	92.857	ENSACAG00000014561	POLR2A	97	92.866	Anolis_carolinensis
ENSAOCG00000004255	polr2a	96	94.723	ENSANAG00000020093	-	97	94.730	Aotus_nancymaae
ENSAOCG00000004255	polr2a	93	98.539	ENSACLG00000006735	polr2a	100	96.554	Astatotilapia_calliptera
ENSAOCG00000004255	polr2a	93	97.840	ENSAMXG00000020046	polr2a	95	97.840	Astyanax_mexicanus
ENSAOCG00000004255	polr2a	94	92.427	ENSBTAG00000046765	POLR2A	97	92.436	Bos_taurus
ENSAOCG00000004255	polr2a	95	70.123	WBGene00000123	ama-1	99	79.612	Caenorhabditis_elegans
ENSAOCG00000004255	polr2a	91	94.475	ENSCAFG00000016532	POLR2A	96	91.754	Canis_familiaris
ENSAOCG00000004255	polr2a	96	93.961	ENSCAFG00020007929	-	97	93.968	Canis_lupus_dingo
ENSAOCG00000004255	polr2a	94	92.427	ENSCHIG00000027173	-	97	92.436	Capra_hircus
ENSAOCG00000004255	polr2a	96	94.723	ENSTSYG00000012803	-	97	94.730	Carlito_syrichta
ENSAOCG00000004255	polr2a	95	89.043	ENSCAPG00000001882	-	97	93.616	Cavia_aperea
ENSAOCG00000004255	polr2a	99	90.944	ENSCPOG00000014812	-	97	93.366	Cavia_porcellus
ENSAOCG00000004255	polr2a	96	94.723	ENSCCAG00000020938	-	97	94.730	Cebus_capucinus
ENSAOCG00000004255	polr2a	96	94.024	ENSCATG00000013680	-	97	94.032	Cercocebus_atys
ENSAOCG00000004255	polr2a	96	94.596	ENSCLAG00000012196	-	97	94.603	Chinchilla_lanigera
ENSAOCG00000004255	polr2a	96	83.652	ENSCSAG00000011644	-	97	83.672	Chlorocebus_sabaeus
ENSAOCG00000004255	polr2a	99	88.944	ENSCPBG00000012697	POLR2A	99	85.964	Chrysemys_picta_bellii
ENSAOCG00000004255	polr2a	99	75.579	ENSCING00000007884	-	99	76.164	Ciona_intestinalis
ENSAOCG00000004255	polr2a	95	75.200	ENSCSAVG00000008334	-	99	81.731	Ciona_savignyi
ENSAOCG00000004255	polr2a	96	93.140	ENSCANG00000010622	-	97	93.149	Colobus_angolensis_palliatus
ENSAOCG00000004255	polr2a	96	88.959	ENSCGRG00001003538	Polr2a	95	89.460	Cricetulus_griseus_chok1gshd
ENSAOCG00000004255	polr2a	84	91.017	ENSCGRG00000012105	Polr2a	85	91.028	Cricetulus_griseus_crigri
ENSAOCG00000004255	polr2a	93	97.649	ENSCSEG00000002635	polr2a	95	97.649	Cynoglossus_semilaevis
ENSAOCG00000004255	polr2a	93	96.278	ENSCVAG00000005156	polr2a	95	96.278	Cyprinodon_variegatus
ENSAOCG00000004255	polr2a	93	94.916	ENSDARG00000099966	polr2a	90	94.916	Danio_rerio
ENSAOCG00000004255	polr2a	96	89.067	ENSDNOG00000016482	-	97	89.081	Dasypus_novemcinctus
ENSAOCG00000004255	polr2a	96	94.723	ENSDORG00000008667	Polr2a	97	94.730	Dipodomys_ordii
ENSAOCG00000004255	polr2a	99	70.489	FBgn0003277	RpII215	91	74.471	Drosophila_melanogaster
ENSAOCG00000004255	polr2a	94	88.076	ENSETEG00000002540	-	87	87.586	Echinops_telfairi
ENSAOCG00000004255	polr2a	89	87.523	ENSEBUG00000013967	polr2a	92	87.508	Eptatretus_burgeri
ENSAOCG00000004255	polr2a	90	92.489	ENSEASG00005019114	-	96	92.635	Equus_asinus_asinus
ENSAOCG00000004255	polr2a	96	92.427	ENSECAG00000018485	POLR2A	97	92.436	Equus_caballus
ENSAOCG00000004255	polr2a	83	94.459	ENSEEUG00000001154	-	95	94.459	Erinaceus_europaeus
ENSAOCG00000004255	polr2a	92	95.521	ENSELUG00000014284	polr2a	84	95.521	Esox_lucius
ENSAOCG00000004255	polr2a	96	94.069	ENSFDAG00000008287	-	97	94.077	Fukomys_damarensis
ENSAOCG00000004255	polr2a	99	94.565	ENSFHEG00000001768	polr2a	91	98.511	Fundulus_heteroclitus
ENSAOCG00000004255	polr2a	97	91.084	ENSGMOG00000007725	polr2a	100	93.313	Gadus_morhua
ENSAOCG00000004255	polr2a	100	95.968	ENSGAFG00000005389	polr2a	99	93.951	Gambusia_affinis
ENSAOCG00000004255	polr2a	99	91.642	ENSGACG00000019366	polr2a	100	94.110	Gasterosteus_aculeatus
ENSAOCG00000004255	polr2a	96	91.868	ENSGGOG00000014800	-	96	92.995	Gorilla_gorilla
ENSAOCG00000004255	polr2a	90	98.539	ENSHBUG00000018937	polr2a	98	96.554	Haplochromis_burtoni
ENSAOCG00000004255	polr2a	96	94.787	ENSHGLG00000012381	POLR2A	97	94.794	Heterocephalus_glaber_female
ENSAOCG00000004255	polr2a	96	94.787	ENSHGLG00100014843	POLR2A	97	94.794	Heterocephalus_glaber_male
ENSAOCG00000004255	polr2a	93	95.720	ENSHCOG00000011874	polr2a	95	95.720	Hippocampus_comes
ENSAOCG00000004255	polr2a	93	97.205	ENSIPUG00000002613	Polr2a	95	97.205	Ictalurus_punctatus
ENSAOCG00000004255	polr2a	96	94.723	ENSSTOG00000001304	-	97	94.730	Ictidomys_tridecemlineatus
ENSAOCG00000004255	polr2a	96	94.723	ENSJJAG00000013049	Polr2a	97	94.730	Jaculus_jaculus
ENSAOCG00000004255	polr2a	84	100.000	ENSKMAG00000016343	polr2a	86	100.000	Kryptolebias_marmoratus
ENSAOCG00000004255	polr2a	99	94.966	ENSLBEG00000027652	polr2a	100	96.769	Labrus_bergylta
ENSAOCG00000004255	polr2a	90	85.769	ENSLACG00000012071	POLR2A	87	94.958	Latimeria_chalumnae
ENSAOCG00000004255	polr2a	99	92.049	ENSLOCG00000013863	polr2a	98	96.834	Lepisosteus_oculatus
ENSAOCG00000004255	polr2a	96	92.427	ENSLAFG00000008626	-	97	92.436	Loxodonta_africana
ENSAOCG00000004255	polr2a	52	93.258	ENSMFAG00000007042	-	99	93.258	Macaca_fascicularis
ENSAOCG00000004255	polr2a	96	94.723	ENSMMUG00000023620	-	97	94.730	Macaca_mulatta
ENSAOCG00000004255	polr2a	96	94.278	ENSMNEG00000040407	-	98	91.383	Macaca_nemestrina
ENSAOCG00000004255	polr2a	95	90.208	ENSMLEG00000030263	-	99	93.258	Mandrillus_leucophaeus
ENSAOCG00000004255	polr2a	93	96.402	ENSMAMG00000003351	polr2a	98	94.118	Mastacembelus_armatus
ENSAOCG00000004255	polr2a	93	97.459	ENSMZEG00005021429	polr2a	95	97.459	Maylandia_zebra
ENSAOCG00000004255	polr2a	53	94.190	ENSMAUG00000021055	-	99	94.190	Mesocricetus_auratus
ENSAOCG00000004255	polr2a	96	93.774	ENSMICG00000013372	-	98	93.654	Microcebus_murinus
ENSAOCG00000004255	polr2a	93	90.025	ENSMOCG00000018279	Polr2a	97	90.699	Microtus_ochrogaster
ENSAOCG00000004255	polr2a	90	96.154	ENSMMOG00000012515	polr2a	88	96.154	Mola_mola
ENSAOCG00000004255	polr2a	96	92.117	ENSMODG00000007009	-	97	92.126	Monodelphis_domestica
ENSAOCG00000004255	polr2a	100	95.497	ENSMALG00000008716	polr2a	86	98.856	Monopterus_albus
ENSAOCG00000004255	polr2a	96	94.723	MGP_CAROLIEiJ_G0016587	Polr2a	97	94.730	Mus_caroli
ENSAOCG00000004255	polr2a	96	94.723	ENSMUSG00000005198	Polr2a	97	94.730	Mus_musculus
ENSAOCG00000004255	polr2a	96	90.297	MGP_PahariEiJ_G0017718	Polr2a	97	90.309	Mus_pahari
ENSAOCG00000004255	polr2a	96	94.723	MGP_SPRETEiJ_G0017423	Polr2a	97	94.730	Mus_spretus
ENSAOCG00000004255	polr2a	96	92.427	ENSMPUG00000009648	-	97	92.436	Mustela_putorius_furo
ENSAOCG00000004255	polr2a	96	91.816	ENSMLUG00000009088	-	97	91.827	Myotis_lucifugus
ENSAOCG00000004255	polr2a	96	94.723	ENSNGAG00000002543	Polr2a	97	94.730	Nannospalax_galili
ENSAOCG00000004255	polr2a	100	94.917	ENSNBRG00000002005	polr2a	100	96.715	Neolamprologus_brichardi
ENSAOCG00000004255	polr2a	96	94.723	ENSNLEG00000009460	-	97	94.730	Nomascus_leucogenys
ENSAOCG00000004255	polr2a	93	95.425	ENSMEUG00000008611	-	96	85.537	Notamacropus_eugenii
ENSAOCG00000004255	polr2a	83	92.104	ENSOPRG00000015116	-	99	94.251	Ochotona_princeps
ENSAOCG00000004255	polr2a	89	94.456	ENSODEG00000017674	-	93	88.936	Octodon_degus
ENSAOCG00000004255	polr2a	93	96.464	ENSONIG00000009231	polr2a	95	96.464	Oreochromis_niloticus
ENSAOCG00000004255	polr2a	50	93.998	ENSOANG00000003303	-	98	93.998	Ornithorhynchus_anatinus
ENSAOCG00000004255	polr2a	99	88.506	ENSOCUG00000017929	-	100	91.692	Oryctolagus_cuniculus
ENSAOCG00000004255	polr2a	93	98.475	ENSORLG00000006431	polr2a	100	96.500	Oryzias_latipes
ENSAOCG00000004255	polr2a	93	98.475	ENSORLG00020010235	polr2a	100	96.500	Oryzias_latipes_hni
ENSAOCG00000004255	polr2a	93	98.348	ENSORLG00015007075	polr2a	95	98.348	Oryzias_latipes_hsok
ENSAOCG00000004255	polr2a	98	96.080	ENSOMEG00000010713	polr2a	100	98.444	Oryzias_melastigma
ENSAOCG00000004255	polr2a	96	92.427	ENSOGAG00000033608	-	97	92.436	Otolemur_garnettii
ENSAOCG00000004255	polr2a	92	92.427	ENSOARG00000013874	-	91	92.436	Ovis_aries
ENSAOCG00000004255	polr2a	93	91.943	ENSPPAG00000043734	-	97	94.222	Pan_paniscus
ENSAOCG00000004255	polr2a	96	94.723	ENSPTRG00000008691	POLR2A	97	94.730	Pan_troglodytes
ENSAOCG00000004255	polr2a	96	94.024	ENSPANG00000024099	-	97	94.032	Papio_anubis
ENSAOCG00000004255	polr2a	84	96.118	ENSPKIG00000005727	polr2a	85	96.118	Paramormyrops_kingsleyae
ENSAOCG00000004255	polr2a	98	90.826	ENSPSIG00000014006	POLR2A	98	92.875	Pelodiscus_sinensis
ENSAOCG00000004255	polr2a	100	98.007	ENSPMGG00000019734	polr2a	100	98.007	Periophthalmus_magnuspinnatus
ENSAOCG00000004255	polr2a	96	94.723	ENSPEMG00000012521	Polr2a	97	94.730	Peromyscus_maniculatus_bairdii
ENSAOCG00000004255	polr2a	99	94.293	ENSPCIG00000028851	-	82	94.293	Phascolarctos_cinereus
ENSAOCG00000004255	polr2a	85	96.340	ENSPFOG00000007890	polr2a	85	98.697	Poecilia_formosa
ENSAOCG00000004255	polr2a	85	96.571	ENSPLAG00000007399	polr2a	85	98.697	Poecilia_latipinna
ENSAOCG00000004255	polr2a	100	96.736	ENSPMEG00000002071	polr2a	100	96.736	Poecilia_mexicana
ENSAOCG00000004255	polr2a	100	94.865	ENSPREG00000013122	polr2a	100	96.661	Poecilia_reticulata
ENSAOCG00000004255	polr2a	91	94.538	ENSPPYG00000007924	-	89	94.544	Pongo_abelii
ENSAOCG00000004255	polr2a	87	95.263	ENSPCAG00000006951	-	89	95.263	Procavia_capensis
ENSAOCG00000004255	polr2a	96	94.723	ENSPCOG00000025260	-	97	94.730	Propithecus_coquereli
ENSAOCG00000004255	polr2a	96	92.117	ENSPVAG00000005069	-	97	92.126	Pteropus_vampyrus
ENSAOCG00000004255	polr2a	100	93.067	ENSPNYG00000022340	polr2a	100	91.330	Pundamilia_nyererei
ENSAOCG00000004255	polr2a	93	95.658	ENSPNAG00000011237	polr2a	95	95.658	Pygocentrus_nattereri
ENSAOCG00000004255	polr2a	94	92.365	ENSRNOG00000028834	Polr2a	97	92.374	Rattus_norvegicus
ENSAOCG00000004255	polr2a	91	92.055	ENSRBIG00000002471	-	89	94.730	Rhinopithecus_bieti
ENSAOCG00000004255	polr2a	91	94.538	ENSRROG00000029583	-	98	92.436	Rhinopithecus_roxellana
ENSAOCG00000004255	polr2a	86	50.809	YDL140C	RPO21	99	80.769	Saccharomyces_cerevisiae
ENSAOCG00000004255	polr2a	96	94.723	ENSSBOG00000000808	-	97	94.730	Saimiri_boliviensis_boliviensis
ENSAOCG00000004255	polr2a	90	94.289	ENSSHAG00000002858	-	84	94.296	Sarcophilus_harrisii
ENSAOCG00000004255	polr2a	93	97.395	ENSSFOG00015023275	polr2a	95	97.395	Scleropages_formosus
ENSAOCG00000004255	polr2a	100	93.211	ENSSMAG00000009137	polr2a	96	96.154	Scophthalmus_maximus
ENSAOCG00000004255	polr2a	100	95.332	ENSSDUG00000020466	polr2a	100	97.146	Seriola_dumerili
ENSAOCG00000004255	polr2a	100	95.280	ENSSLDG00000020613	polr2a	100	97.092	Seriola_lalandi_dorsalis
ENSAOCG00000004255	polr2a	97	88.218	ENSSARG00000005875	-	99	88.957	Sorex_araneus
ENSAOCG00000004255	polr2a	100	97.437	ENSSPAG00000016741	polr2a	94	99.762	Stegastes_partitus
ENSAOCG00000004255	polr2a	96	91.496	ENSSSCG00000028278	-	97	91.507	Sus_scrofa
ENSAOCG00000004255	polr2a	98	90.698	ENSTRUG00000012320	polr2a	81	90.317	Takifugu_rubripes
ENSAOCG00000004255	polr2a	88	96.203	ENSTNIG00000010136	polr2a	100	95.929	Tetraodon_nigroviridis
ENSAOCG00000004255	polr2a	75	94.898	ENSTBEG00000013294	-	58	94.898	Tupaia_belangeri
ENSAOCG00000004255	polr2a	96	90.751	ENSTTRG00000014273	-	97	90.763	Tursiops_truncatus
ENSAOCG00000004255	polr2a	95	94.293	ENSUAMG00000014866	-	96	91.589	Ursus_americanus
ENSAOCG00000004255	polr2a	88	91.061	ENSUMAG00000015732	-	96	91.061	Ursus_maritimus
ENSAOCG00000004255	polr2a	62	98.370	ENSVPAG00000008842	-	75	98.370	Vicugna_pacos
ENSAOCG00000004255	polr2a	91	94.475	ENSVVUG00000027878	-	95	94.482	Vulpes_vulpes
ENSAOCG00000004255	polr2a	92	96.273	ENSXETG00000012465	polr2a	98	96.273	Xenopus_tropicalis
ENSAOCG00000004255	polr2a	99	97.640	ENSXCOG00000001804	polr2a	100	94.629	Xiphophorus_couchianus
ENSAOCG00000004255	polr2a	100	94.865	ENSXMAG00000015687	polr2a	100	96.661	Xiphophorus_maculatus